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Conserved domains on  [gi|365177131|emb|CCD57327|]
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NADH dehydrogenase subunit 4L (mitochondrion) [Trachemys callirostris]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
Oxidored_q2 super family cl00492
NADH-ubiquinone/plastoquinone oxidoreductase chain 4L;
1-97 2.01e-38

NADH-ubiquinone/plastoquinone oxidoreductase chain 4L;


The actual alignment was detected with superfamily member MTH00126:

Pssm-ID: 444937  Cd Length: 98  Bit Score: 123.54  E-value: 2.01e-38
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 365177131  1 MTPLHLTYYSAFIVSITGLSLHQTHLISTLLCLESMMLSLYIALSMWPIQLQTSSFMLTPMLMLSFSACEAGMGLSLLVA 80
Cdd:MTH00126  1 MTPVHFSFSSAFILGLMGLAFHRTHLLSALLCLEGMMLSLFIALSLWALQLESTSFSAAPMLLLAFSACEASAGLALLVA 80

                        90
                ....*....|....*..
gi 365177131 81 SSRTHGSDCLQNLNLLQ 97
Cdd:MTH00126 81 TARTHGTDRLQNLNLLQ 97
 
Name Accession Description Interval E-value
ND4L MTH00126
NADH dehydrogenase subunit 4L; Provisional
 1-97 2.01e-38

NADH dehydrogenase subunit 4L; Provisional


Pssm-ID: 177185  Cd Length: 98  Bit Score: 123.54  E-value: 2.01e-38
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 365177131  1 MTPLHLTYYSAFIVSITGLSLHQTHLISTLLCLESMMLSLYIALSMWPIQLQTSSFMLTPMLMLSFSACEAGMGLSLLVA 80
Cdd:MTH00126  1 MTPVHFSFSSAFILGLMGLAFHRTHLLSALLCLEGMMLSLFIALSLWALQLESTSFSAAPMLLLAFSACEASAGLALLVA 80

                        90
                ....*....|....*..
gi 365177131 81 SSRTHGSDCLQNLNLLQ 97
Cdd:MTH00126 81 TARTHGTDRLQNLNLLQ 97
Oxidored_q2 pfam00420
NADH-ubiquinone/plastoquinone oxidoreductase chain 4L;
11-97 1.97e-10

NADH-ubiquinone/plastoquinone oxidoreductase chain 4L;


Pssm-ID: 425672  Cd Length: 95  Bit Score: 52.57  E-value: 1.97e-10
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 365177131  11 AFIVSITGLsLHQTHLISTLLCLESMMLSLYIALSMWPIQLQTSSFMLTPMLMLSFSACEAGMGLSLLVASSRTHGSDCL 90
Cdd:pfam00420  9 LFLIGLYGL-LLRRNLLRVLLSLELMLNAVNLALVLFGRLTADPLPQALILTAIVIAAAEAAVGLALLVRIYRTHGTDDV 87


                 ....*..
gi 365177131  91 QNLNLLQ 97
Cdd:pfam00420 88 DSLNLLK 94
 
Name Accession Description Interval E-value
ND4L MTH00126
NADH dehydrogenase subunit 4L; Provisional
 1-97 2.01e-38

NADH dehydrogenase subunit 4L; Provisional


Pssm-ID: 177185  Cd Length: 98  Bit Score: 123.54  E-value: 2.01e-38
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 365177131  1 MTPLHLTYYSAFIVSITGLSLHQTHLISTLLCLESMMLSLYIALSMWPIQLQTSSFMLTPMLMLSFSACEAGMGLSLLVA 80
Cdd:MTH00126  1 MTPVHFSFSSAFILGLMGLAFHRTHLLSALLCLEGMMLSLFIALSLWALQLESTSFSAAPMLLLAFSACEASAGLALLVA 80

                        90
                ....*....|....*..
gi 365177131 81 SSRTHGSDCLQNLNLLQ 97
Cdd:MTH00126 81 TARTHGTDRLQNLNLLQ 97
ND4L MTH00125
NADH dehydrogenase subunit 4L; Provisional
 1-97 1.51e-36

NADH dehydrogenase subunit 4L; Provisional


Pssm-ID: 177184  Cd Length: 98  Bit Score: 118.80  E-value: 1.51e-36
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 365177131  1 MTPLHLTYYSAFIVSITGLSLHQTHLISTLLCLESMMLSLYIALSMWPIQLQTSSFMLTPMLMLSFSACEAGMGLSLLVA 80
Cdd:MTH00125  1 MTPTHFSLYTAFMLSLLGLSFHRTHLMSALLCLESMMLSLFIMLSLWPITTQTPSFTPMPIILLTFSACEAGTGLALLVA 80

                        90
                ....*....|....*..
gi 365177131 81 SSRTHGSDCLQNLNLLQ 97
Cdd:MTH00125 81 TTRTHGSDHLKNLNLLQ 97
ND4L MTH00067
NADH dehydrogenase subunit 4L; Provisional
 1-97 2.21e-34

NADH dehydrogenase subunit 4L; Provisional


Pssm-ID: 177139  Cd Length: 98  Bit Score: 113.54  E-value: 2.21e-34
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 365177131  1 MTPLHLTYYSAFIVSITGLSLHQTHLISTLLCLESMMLSLYIALSMWPIQLQTSSFMLTPMLMLSFSACEAGMGLSLLVA 80
Cdd:MTH00067  1 MSPTYFTFYSAFLLGLMGLAFHRTHLLSALLCLEGMMLSLFIALSLWSTQFESLSYFSLPMFMLTFSACEASTGLALMVA 80

                        90
                ....*....|....*..
gi 365177131 81 SSRTHGSDCLQNLNLLQ 97
Cdd:MTH00067 81 TTRTHGTDHLKNLNLLQ 97
ND4L MTH00107
NADH dehydrogenase subunit 4L; Provisional
 1-97 1.04e-20

NADH dehydrogenase subunit 4L; Provisional


Pssm-ID: 177169  Cd Length: 98  Bit Score: 78.82  E-value: 1.04e-20
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 365177131  1 MTPLHLTYYSAFIVSITGLSLHQTHLISTLLCLESMMLSLYIALSMWPIQLQTSSFMLTPMLMLSFSACEAGMGLSLLVA 80
Cdd:MTH00107  1 MSLIYMNIMLAFTISLLGLLMYRSHLMSSLLCLEGMMLSLFIMATLTILNTHFTLASMMPIILLVFAACEAAVGLALLVM 80

                        90
                ....*....|....*..
gi 365177131 81 SSRTHGSDCLQNLNLLQ 97
Cdd:MTH00107 81 VSNTYGTDYVQNLNLLQ 97
ND4L MTH00181
NADH dehydrogenase subunit 4L; Provisional
 4-96 2.05e-18

NADH dehydrogenase subunit 4L; Provisional


Pssm-ID: 214450  Cd Length: 93  Bit Score: 72.67  E-value: 2.05e-18
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 365177131  4 LHLTYYSAFIVSITGLSLHQTHLISTLLCLESMMLSLYIALSMWPIQLQTSSFMLTPMLMLSFSACEAGMGLSLLVASSR 83
Cdd:MTH00181  1 MMFVFISAFILLLLGLSLYKTHLLSLLLCLEGMMLFLFLLLALFSLLSSSSSMLMFGLILLTFSACEAVLGLSLLVATNR 80

                        90
                ....*....|...
gi 365177131 84 THGSDCLQNLNLL 96
Cdd:MTH00181 81 THGSDHLLKFNLL 93
ND4L MTH00043
NADH dehydrogenase subunit 4L; Validated
 1-98 4.72e-14

NADH dehydrogenase subunit 4L; Validated


Pssm-ID: 214410  Cd Length: 98  Bit Score: 61.86  E-value: 4.72e-14
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 365177131  1 MTPLHLTYYSAFIVSITGLSLHQTHLISTLLCLESMMLSLYIALSMWPIQLQTSSFMLTPMLMLSFSACEAGMGLSLLVA 80
Cdd:MTH00043  1 MNIILIIILSSFFLGLLGILINRLHLLSILLCLELLLISLFLNISIWSLNYGNFSNLSFSLLLLTLSACEASIGLSLMVL 80

                        90
                ....*....|....*...
gi 365177131 81 SSRTHGSDCLQNLNLLQY 98
Cdd:MTH00043 81 LSRNHNSDLVASLNLLQN 98
Oxidored_q2 pfam00420
NADH-ubiquinone/plastoquinone oxidoreductase chain 4L;
11-97 1.97e-10

NADH-ubiquinone/plastoquinone oxidoreductase chain 4L;


Pssm-ID: 425672  Cd Length: 95  Bit Score: 52.57  E-value: 1.97e-10
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 365177131  11 AFIVSITGLsLHQTHLISTLLCLESMMLSLYIALSMWPIQLQTSSFMLTPMLMLSFSACEAGMGLSLLVASSRTHGSDCL 90
Cdd:pfam00420  9 LFLIGLYGL-LLRRNLLRVLLSLELMLNAVNLALVLFGRLTADPLPQALILTAIVIAAAEAAVGLALLVRIYRTHGTDDV 87


                 ....*..
gi 365177131  91 QNLNLLQ 97
Cdd:pfam00420 88 DSLNLLK 94
ND4L MTH00188
NADH dehydrogenase subunit 4L; Provisional
 6-97 4.60e-08

NADH dehydrogenase subunit 4L; Provisional


Pssm-ID: 177237  Cd Length: 97  Bit Score: 46.51  E-value: 4.60e-08
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 365177131  6 LTYYSAFIVSITGLSLHQTHLISTLLCLESMMLSLYIALSMWPIQLQTSSFMLtpMLMLSFSACEAGMGLSLLVASSRTH 85
Cdd:MTH00188  7 LVILLFVVLGLFTFLLNRKHLLMLLLSLEAIMLSLFWFLLVGLSYMEKELYLS--LVLLTFAACEASVGLALLVSLIRSH 84

                        90
                ....*....|..
gi 365177131 86 GSDCLQNLNLLQ 97
Cdd:MTH00188 85 GSDYVSSLNLIK 96
ND4L MTH00162
NADH dehydrogenase subunit 4L; Provisional
 12-92 7.16e-07

NADH dehydrogenase subunit 4L; Provisional


Pssm-ID: 177218  Cd Length: 89  Bit Score: 43.22  E-value: 7.16e-07
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 365177131 12 FIVSITGLSLHQTHLISTLLCLESMMLSLYIALSMWPIQLQTSSFMLtpMLMLSFSACEAGMGLSLLVASSRTHGSDCLQ 91
Cdd:MTH00162 11 FFSGLLVFLSKRKHLLLMLLSLEFMVLSLFFLLFLYLSFFNYELYFL--LFFLTFSVCEGALGLSILVSMIRSHGNDYFS 88


                .
gi 365177131 92 N 92
Cdd:MTH00162 89 S 89
ND4L MTH00149
NADH dehydrogenase subunit 4L; Provisional
 1-88 2.61e-06

NADH dehydrogenase subunit 4L; Provisional


Pssm-ID: 214434  Cd Length: 97  Bit Score: 41.75  E-value: 2.61e-06
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 365177131  1 MTPLHLTYYSAFIVSITGLSLHQTHLISTLLCLESMMLSLYIAL-SMWPIQLQTSSFMLtpmLMLSFSACEAGMGLSLLV 79
Cdd:MTH00149  2 MFMLLLLSLFGFLMGVFALLFQYKHLLSILLSLEALMLSLLVMMfSSSGLISFSSYLFL---IILTFGACEASLGLSLLV 78


                ....*....
gi 365177131 80 ASSRTHGSD 88
Cdd:MTH00149 79 SLIRLHGND 87
ND4L MTH00013
NADH dehydrogenase subunit 4L; Validated
 12-93 9.40e-06

NADH dehydrogenase subunit 4L; Validated


Pssm-ID: 133655  Cd Length: 97  Bit Score: 40.50  E-value: 9.40e-06
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 365177131 12 FIVSITGLSLHQTHLISTLLCLESMMLSLYIaLSMWPIQLQTSSFMLTPMLMLSFSACEAGMGLSLLVASSRTHGSDCLQ 91
Cdd:MTH00013 12 PFISMFNLSLQRKHLLMSLLSLEAMILSLAL-FIPLSLMFANQVNGMLAIVLLTFGACEASLGLSLLVLMTRSYGNDMLK 90


                ..
gi 365177131 92 NL 93
Cdd:MTH00013 91 SL 92
ND4L MTH00180
NADH dehydrogenase subunit 4L; Provisional
 12-97 1.93e-04

NADH dehydrogenase subunit 4L; Provisional


Pssm-ID: 177231  Cd Length: 99  Bit Score: 36.93  E-value: 1.93e-04
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 365177131 12 FIVSITGLSLHQTHLISTLLCLESMMLSLYIALSMWPIQLQTSSFMLTPMLMLSFSACEAGMGLSLLVASSRTHGSDCLQ 91
Cdd:MTH00180 13 FILGVLGIVLNRSNLIIMLMSIELMLLAISLLFLINSVAIDNLIGQIFTIMILTVAAAESAIGLAILVAYYRIRGTIAVK 92


                ....*.
gi 365177131 92 NLNLLQ 97
Cdd:MTH00180 93 SLNLLR 98
ND4L MTH00001
NADH dehydrogenase subunit 4L; Provisional
 12-97 5.02e-03

NADH dehydrogenase subunit 4L; Provisional


Pssm-ID: 177099  Cd Length: 99  Bit Score: 33.50  E-value: 5.02e-03
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 365177131 12 FIVSITGLSLHQTHLISTLLCLESMMLSLYIALSMWPIQLQTSSFMLTPMLMLSFSACEAGMGLSLLVASSRTHGSDCLQ 91
Cdd:MTH00001 13 FLLGIWGIILNRGHFIIMLVSIELVLLSTFFLFLINSIEIDLLIEQIFTIMGLTIAAAESAIGLAIMVAYYRIRGTISLK 92


                ....*.
gi 365177131 92 NLNLLQ 97
Cdd:MTH00001 93 SLNSLR 98
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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