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Conserved domains on  [gi|358373484|dbj|GAA90082|]
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similar to An18g06350 [Aspergillus luchuensis IFO 4308]

Protein Classification

Ilm1 domain-containing protein( domain architecture ID 10563361)

Ilm1 domain-containing protein

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
Ilm1 pfam10311
Increased loss of mitochondrial DNA protein 1; This is a family of proteins of approximately ...
 4-202 9.80e-74

Increased loss of mitochondrial DNA protein 1; This is a family of proteins of approximately 200 residues that are conserved in fungi. Ilm1 is part of the peroxisome, a complex that is the sole site of beta-oxidation in Saccharomyces cerevisiae and known to be required for optimal growth in the presence of fatty acid. Ilm1 may participate in the control of the C16/C18 ratio since it interacts strongly with Mga2p, a transcription factor that controls expression of Ole1, the sole fatty acyl desaturase in S. cerevisiae responsible for conversion of the saturated fatty acids stearate (C18) and palmitate (C16) to oleate and palmitoleate, respectively.


:

Pssm-ID: 431212  Cd Length: 160  Bit Score: 220.14  E-value: 9.80e-74
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 358373484    4 LSSKTLIQAHALFLFVLAVYLTRSPEVVTESDLVFMLGEFLNLEATPSISRPQSPFALCGVLLVVDALVDLILVtkipQI 83
Cdd:pfam10311   1 ISSKTLIRSHSLFHITLAVYLLTNPETIADQDLVFILGEAMGIPHARSFDTPSSPFAFLGVLLAFLGLSDLILL----SL 76

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 358373484   84 NEILAMAQAARVQSPIpvagavrtnpfmarltslyseiwtllsaaRFCIFFAVSFFIYQSQPSAWGMDAATGMgnygtaG 163
Cdd:pfam10311  77 PEEIAALEYWGSQAPL-----------------------------RLLFFFALSFYIYLFKPSSPLGAKGPSY------A 121

                         170       180       190
                  ....*....|....*....|....*....|....*....
gi 358373484  164 AATSGLDQLKNRVVFTYGFMEMMFWLWIFITLREERQEA 202
Cdd:pfam10311 122 ASGWGLDGLKNRVVFTFGFVEMMFWFWVFVTLREERREI 160
 
Name Accession Description Interval E-value
Ilm1 pfam10311
Increased loss of mitochondrial DNA protein 1; This is a family of proteins of approximately ...
 4-202 9.80e-74

Increased loss of mitochondrial DNA protein 1; This is a family of proteins of approximately 200 residues that are conserved in fungi. Ilm1 is part of the peroxisome, a complex that is the sole site of beta-oxidation in Saccharomyces cerevisiae and known to be required for optimal growth in the presence of fatty acid. Ilm1 may participate in the control of the C16/C18 ratio since it interacts strongly with Mga2p, a transcription factor that controls expression of Ole1, the sole fatty acyl desaturase in S. cerevisiae responsible for conversion of the saturated fatty acids stearate (C18) and palmitate (C16) to oleate and palmitoleate, respectively.


Pssm-ID: 431212  Cd Length: 160  Bit Score: 220.14  E-value: 9.80e-74
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 358373484    4 LSSKTLIQAHALFLFVLAVYLTRSPEVVTESDLVFMLGEFLNLEATPSISRPQSPFALCGVLLVVDALVDLILVtkipQI 83
Cdd:pfam10311   1 ISSKTLIRSHSLFHITLAVYLLTNPETIADQDLVFILGEAMGIPHARSFDTPSSPFAFLGVLLAFLGLSDLILL----SL 76

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 358373484   84 NEILAMAQAARVQSPIpvagavrtnpfmarltslyseiwtllsaaRFCIFFAVSFFIYQSQPSAWGMDAATGMgnygtaG 163
Cdd:pfam10311  77 PEEIAALEYWGSQAPL-----------------------------RLLFFFALSFYIYLFKPSSPLGAKGPSY------A 121

                         170       180       190
                  ....*....|....*....|....*....|....*....
gi 358373484  164 AATSGLDQLKNRVVFTYGFMEMMFWLWIFITLREERQEA 202
Cdd:pfam10311 122 ASGWGLDGLKNRVVFTFGFVEMMFWFWVFVTLREERREI 160
 
Name Accession Description Interval E-value
Ilm1 pfam10311
Increased loss of mitochondrial DNA protein 1; This is a family of proteins of approximately ...
 4-202 9.80e-74

Increased loss of mitochondrial DNA protein 1; This is a family of proteins of approximately 200 residues that are conserved in fungi. Ilm1 is part of the peroxisome, a complex that is the sole site of beta-oxidation in Saccharomyces cerevisiae and known to be required for optimal growth in the presence of fatty acid. Ilm1 may participate in the control of the C16/C18 ratio since it interacts strongly with Mga2p, a transcription factor that controls expression of Ole1, the sole fatty acyl desaturase in S. cerevisiae responsible for conversion of the saturated fatty acids stearate (C18) and palmitate (C16) to oleate and palmitoleate, respectively.


Pssm-ID: 431212  Cd Length: 160  Bit Score: 220.14  E-value: 9.80e-74
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 358373484    4 LSSKTLIQAHALFLFVLAVYLTRSPEVVTESDLVFMLGEFLNLEATPSISRPQSPFALCGVLLVVDALVDLILVtkipQI 83
Cdd:pfam10311   1 ISSKTLIRSHSLFHITLAVYLLTNPETIADQDLVFILGEAMGIPHARSFDTPSSPFAFLGVLLAFLGLSDLILL----SL 76

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 358373484   84 NEILAMAQAARVQSPIpvagavrtnpfmarltslyseiwtllsaaRFCIFFAVSFFIYQSQPSAWGMDAATGMgnygtaG 163
Cdd:pfam10311  77 PEEIAALEYWGSQAPL-----------------------------RLLFFFALSFYIYLFKPSSPLGAKGPSY------A 121

                         170       180       190
                  ....*....|....*....|....*....|....*....
gi 358373484  164 AATSGLDQLKNRVVFTYGFMEMMFWLWIFITLREERQEA 202
Cdd:pfam10311 122 ASGWGLDGLKNRVVFTFGFVEMMFWFWVFVTLREERREI 160
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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