|
Name |
Accession |
Description |
Interval |
E-value |
| PTZ00421 |
PTZ00421 |
coronin; Provisional |
9-426 |
6.68e-86 |
|
coronin; Provisional
Pssm-ID: 173611 [Multi-domain] Cd Length: 493 Bit Score: 276.00 E-value: 6.68e-86
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 358365890 9 SKYRHVFGRPTRkssQEQCYDNLRVSKNAWD-TNLVKANPKYLSVNWEAGGGGAfaVIPLEERGKLPERIPLFRGHTAVV 87
Cdd:PTZ00421 4 SRFRHTQGVPAR---PDRHFLNVTPSTALWDcSNTIACNDRFIAVPWQQLGSTA--VLKHTDYGKLASNPPILLGQEGPI 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 358365890 88 LDTDWNPFNDDLIASGSDDGKVFLWRVPENFTLRPDLDPdeiqdvapVGKLSGHPKKIGHVLFNPAAENILATASGDYTV 167
Cdd:PTZ00421 79 IDVAFNPFDPQKLFTASEDGTIMGWGIPEEGLTQNISDP--------IVHLQGHTKKVGIVSFHPSAMNVLASAGADMVV 150
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 358365890 168 KIWDIEAGAPKLTL-NLGDIVQSQSWSANGSLLVTTSRDKKLRIWDVRQERPAHETQGHSGAKNSRSVWLGEHDRIATTG 246
Cdd:PTZ00421 151 NVWDVERGKAVEVIkCHSDQITSLEWNLDGSLLCTTSKDKKLNIIDPRDGTIVSSVEAHASAKSQRCLWAKRKDLIITLG 230
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 358365890 247 FSKMSDRQLALWDIRAPREPINgFKTLDSISGVCMPFWDEGTQCLYLAGRGDGNIRYFELENDKFEYLAEYKSADPQRGI 326
Cdd:PTZ00421 231 CSKSQQRQIMLWDTRKMASPYS-TVDLDQSSALFIPFFDEDTNLLYIGSKGEGNIRCFELMNERLTFCSSYSSVEPHKGL 309
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 358365890 327 AFMPKRGVNTHDNEVARaFKTVNDGYIEPISFIVPRRA--ETFQDDIYPPTTGLKPAMGPSEWLAGKEAIPPKISMANLY 404
Cdd:PTZ00421 310 CMMPKWSLDTRKCEIAR-FYALTYHSLYTIQMLLPRKQadSELQVDVYPPTFADHPAITADEYFSGGNAEPLVYDMSAVF 388
|
410 420 430
....*....|....*....|....*....|....*.
gi 358365890 405 EG-------------EGLKEVTGVQ-DAPTSTMGAS 426
Cdd:PTZ00421 389 DGtspelmgasalspSGKPRHSGVSvPASTSAMTHS 424
|
|
| DUF1899 |
pfam08953 |
Domain of unknown function (DUF1899); This set of domains is found in various eukaryotic ... |
4-72 |
8.68e-37 |
|
Domain of unknown function (DUF1899); This set of domains is found in various eukaryotic proteins. Function is unknown.
Pssm-ID: 462645 [Multi-domain] Cd Length: 66 Bit Score: 131.08 E-value: 8.68e-37
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 358365890 4 RFVRSSKYRHVFGRPTRKssqEQCYDNLRVSKNAWDTNLVKANPKYLSVNWEAGGGGAFAVIPLEERGK 72
Cdd:pfam08953 1 RFVRASKFRHVYGKPAKK---ELCYDNIKVTKNAWDSNFIAANPKFLAVNWESSGGGAFAVLPLNQTGR 66
|
|
| WD40 |
cd00200 |
WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions ... |
80-332 |
5.02e-28 |
|
WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment.
Pssm-ID: 238121 [Multi-domain] Cd Length: 289 Bit Score: 113.97 E-value: 5.02e-28
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 358365890 80 FRGHTAVVLDTDWNPfNDDLIASGSDDGKVFLWRVPENFTLRpdldpdeiqdvapvgKLSGHPKKIGHVLFNPAAENiLA 159
Cdd:cd00200 5 LKGHTGGVTCVAFSP-DGKLLATGSGDGTIKVWDLETGELLR---------------TLKGHTGPVRDVAASADGTY-LA 67
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 358365890 160 TASGDYTVKIWDIEAGAPKLTLN--LGDiVQSQSWSANGSLLVTTSRDKKLRIWDVRQERPAHETQGHSGAKNSRSVwlG 237
Cdd:cd00200 68 SGSSDKTIRLWDLETGECVRTLTghTSY-VSSVAFSPDGRILSSSSRDKTIKVWDVETGKCLTTLRGHTDWVNSVAF--S 144
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 358365890 238 EHDRIATTGfskMSDRQLALWDIRAPREpingFKTL----DSISGVCmpfWDEGTQCLYLAGrGDGNIRYFELENDKFEY 313
Cdd:cd00200 145 PDGTFVASS---SQDGTIKLWDLRTGKC----VATLtghtGEVNSVA---FSPDGEKLLSSS-SDGTIKLWDLSTGKCLG 213
|
250
....*....|....*....
gi 358365890 314 LAEYKSaDPQRGIAFMPKR 332
Cdd:cd00200 214 TLRGHE-NGVNSVAFSPDG 231
|
|
| WD40 |
COG2319 |
WD40 repeat [General function prediction only]; |
75-265 |
1.84e-26 |
|
WD40 repeat [General function prediction only];
Pssm-ID: 441893 [Multi-domain] Cd Length: 403 Bit Score: 111.93 E-value: 1.84e-26
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 358365890 75 ERIPLFRGHTAVVLDTDWNPfNDDLIASGSDDGKVFLWRVPENftlrpdldpdeiqdvAPVGKLSGHPKKIGHVLFNPAa 154
Cdd:COG2319 153 KLLRTLTGHSGAVTSVAFSP-DGKLLASGSDDGTVRLWDLATG---------------KLLRTLTGHTGAVRSVAFSPD- 215
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 358365890 155 ENILATASGDYTVKIWDIEAGAPKLTLNL-GDIVQSQSWSANGSLLVTTSRDKKLRIWDVRQERPAHETQGHSGAknSRS 233
Cdd:COG2319 216 GKLLASGSADGTVRLWDLATGKLLRTLTGhSGSVRSVAFSPDGRLLASGSADGTVRLWDLATGELLRTLTGHSGG--VNS 293
|
170 180 190
....*....|....*....|....*....|...
gi 358365890 234 V-WLGEHDRIATTGfskmSDRQLALWDIRAPRE 265
Cdd:COG2319 294 VaFSPDGKLLASGS----DDGTVRLWDLATGKL 322
|
|
| WD40 |
smart00320 |
WD40 repeats; Note that these repeats are permuted with respect to the structural repeats ... |
80-112 |
3.18e-06 |
|
WD40 repeats; Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.
Pssm-ID: 197651 [Multi-domain] Cd Length: 40 Bit Score: 44.23 E-value: 3.18e-06
10 20 30
....*....|....*....|....*....|...
gi 358365890 80 FRGHTAVVLDTDWNPfNDDLIASGSDDGKVFLW 112
Cdd:smart00320 8 LKGHTGPVTSVAFSP-DGKYLASGSDDGTIKLW 39
|
|
| flhF |
PRK06995 |
flagellar biosynthesis protein FlhF; |
455-585 |
2.43e-04 |
|
flagellar biosynthesis protein FlhF;
Pssm-ID: 235904 [Multi-domain] Cd Length: 484 Bit Score: 43.80 E-value: 2.43e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 358365890 455 VAKPAPSMKEQGASMAAMVSKFADDEEAETVEEDSSF----EEVQKPVERPARSPEASSPSIKASPWHQKEEEVKTQAAS 530
Cdd:PRK06995 55 AAAAPAAAQPPPAAAPAAVSRPAAPAAEPAPWLVEHAkrltAQREQLVARAAAPAAPEAQAPAAPAERAAAENAARRLAR 134
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 358365890 531 PAKSSPViTPVAAPAdistgAAVAADAVQR------------EIGAIKDLIAEQTKTIASQAQQMQS 585
Cdd:PRK06995 135 AAAAAPR-PRVPADA-----AAAVADAVKArierivndtvmqELRSLRGMLEEQLASLAWGERQRRD 195
|
|
| DedD |
COG3147 |
Cell division protein DedD (periplasmic protein involved in septation) [Cell cycle control, ... |
494-567 |
7.18e-03 |
|
Cell division protein DedD (periplasmic protein involved in septation) [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 442381 [Multi-domain] Cd Length: 140 Bit Score: 37.45 E-value: 7.18e-03
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 358365890 494 VQKPVERPARSPEASSPSIKASPW--HQKEEEVKTQAASPAKSSPVITPVAAPADISTGAAVAADAVQreIGAIKD 567
Cdd:COG3147 2 AEEAAAAPAAAAAPAAPAAAAAPApaAAAAAAAPKPAAKPAAPKPAAAAAAAPAAKAAAPAGGGWVVQ--LGAFSN 75
|
|
|
|
Name |
Accession |
Description |
Interval |
E-value |
| PTZ00421 |
PTZ00421 |
coronin; Provisional |
9-426 |
6.68e-86 |
|
coronin; Provisional
Pssm-ID: 173611 [Multi-domain] Cd Length: 493 Bit Score: 276.00 E-value: 6.68e-86
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 358365890 9 SKYRHVFGRPTRkssQEQCYDNLRVSKNAWD-TNLVKANPKYLSVNWEAGGGGAfaVIPLEERGKLPERIPLFRGHTAVV 87
Cdd:PTZ00421 4 SRFRHTQGVPAR---PDRHFLNVTPSTALWDcSNTIACNDRFIAVPWQQLGSTA--VLKHTDYGKLASNPPILLGQEGPI 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 358365890 88 LDTDWNPFNDDLIASGSDDGKVFLWRVPENFTLRPDLDPdeiqdvapVGKLSGHPKKIGHVLFNPAAENILATASGDYTV 167
Cdd:PTZ00421 79 IDVAFNPFDPQKLFTASEDGTIMGWGIPEEGLTQNISDP--------IVHLQGHTKKVGIVSFHPSAMNVLASAGADMVV 150
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 358365890 168 KIWDIEAGAPKLTL-NLGDIVQSQSWSANGSLLVTTSRDKKLRIWDVRQERPAHETQGHSGAKNSRSVWLGEHDRIATTG 246
Cdd:PTZ00421 151 NVWDVERGKAVEVIkCHSDQITSLEWNLDGSLLCTTSKDKKLNIIDPRDGTIVSSVEAHASAKSQRCLWAKRKDLIITLG 230
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 358365890 247 FSKMSDRQLALWDIRAPREPINgFKTLDSISGVCMPFWDEGTQCLYLAGRGDGNIRYFELENDKFEYLAEYKSADPQRGI 326
Cdd:PTZ00421 231 CSKSQQRQIMLWDTRKMASPYS-TVDLDQSSALFIPFFDEDTNLLYIGSKGEGNIRCFELMNERLTFCSSYSSVEPHKGL 309
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 358365890 327 AFMPKRGVNTHDNEVARaFKTVNDGYIEPISFIVPRRA--ETFQDDIYPPTTGLKPAMGPSEWLAGKEAIPPKISMANLY 404
Cdd:PTZ00421 310 CMMPKWSLDTRKCEIAR-FYALTYHSLYTIQMLLPRKQadSELQVDVYPPTFADHPAITADEYFSGGNAEPLVYDMSAVF 388
|
410 420 430
....*....|....*....|....*....|....*.
gi 358365890 405 EG-------------EGLKEVTGVQ-DAPTSTMGAS 426
Cdd:PTZ00421 389 DGtspelmgasalspSGKPRHSGVSvPASTSAMTHS 424
|
|
| PTZ00420 |
PTZ00420 |
coronin; Provisional |
28-405 |
4.17e-76 |
|
coronin; Provisional
Pssm-ID: 240412 [Multi-domain] Cd Length: 568 Bit Score: 252.56 E-value: 4.17e-76
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 358365890 28 YDNLRVSKNAWDTNLVKANPKYLSVNWEAGGGGAFAVIPLEERGKLPERIPLfRGHTAVVLDTDWNPFNDDLIASGSDDG 107
Cdd:PTZ00420 19 FDDLRICSRVIDSCGIACSSGFVAVPWEVEGGGLIGAIRLENQMRKPPVIKL-KGHTSSILDLQFNPCFSEILASGSEDL 97
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 358365890 108 KVFLWRVPENftlrpDLDPDEIQDvaPVGKLSGHPKKIGHVLFNPAAENILATASGDYTVKIWDIEAGAPKLTLNLGDIV 187
Cdd:PTZ00420 98 TIRVWEIPHN-----DESVKEIKD--PQCILKGHKKKISIIDWNPMNYYIMCSSGFDSFVNIWDIENEKRAFQINMPKKL 170
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 358365890 188 QSQSWSANGSLLVTTSRDKKLRIWDVRQERPAHETQGHSGAKNSRSVWL----GEHDRIATTGFSKMSDRQLALWDIRAP 263
Cdd:PTZ00420 171 SSLKWNIKGNLLSGTCVGKHMHIIDPRKQEIASSFHIHDGGKNTKNIWIdglgGDDNYILSTGFSKNNMREMKLWDLKNT 250
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 358365890 264 REPINGFkTLDSISGVCMPFWDEGTQCLYLAGRGDGNIRYFELENDKFEYLAEYKSADPQRGIAFMPKRGVNTHDNEVAR 343
Cdd:PTZ00420 251 TSALVTM-SIDNASAPLIPHYDESTGLIYLIGKGDGNCRYYQHSLGSIRKVNEYKSCSPFRSFGFLPKQICDVYKCEIGR 329
|
330 340 350 360 370 380
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 358365890 344 AFKTVNDGYIEPISFIVPRRAET-FQDDIYPPTTGLKPAMGPSEWLAGKEAIPPKISMANLYE 405
Cdd:PTZ00420 330 VYKNENNSSIRPISFYVPRKNPTkFQEDLYPPILMHDPERSSRNWIDGKDNKMKRINIKDLTE 392
|
|
| DUF1899 |
pfam08953 |
Domain of unknown function (DUF1899); This set of domains is found in various eukaryotic ... |
4-72 |
8.68e-37 |
|
Domain of unknown function (DUF1899); This set of domains is found in various eukaryotic proteins. Function is unknown.
Pssm-ID: 462645 [Multi-domain] Cd Length: 66 Bit Score: 131.08 E-value: 8.68e-37
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 358365890 4 RFVRSSKYRHVFGRPTRKssqEQCYDNLRVSKNAWDTNLVKANPKYLSVNWEAGGGGAFAVIPLEERGK 72
Cdd:pfam08953 1 RFVRASKFRHVYGKPAKK---ELCYDNIKVTKNAWDSNFIAANPKFLAVNWESSGGGAFAVLPLNQTGR 66
|
|
| WD40 |
cd00200 |
WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions ... |
80-332 |
5.02e-28 |
|
WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment.
Pssm-ID: 238121 [Multi-domain] Cd Length: 289 Bit Score: 113.97 E-value: 5.02e-28
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 358365890 80 FRGHTAVVLDTDWNPfNDDLIASGSDDGKVFLWRVPENFTLRpdldpdeiqdvapvgKLSGHPKKIGHVLFNPAAENiLA 159
Cdd:cd00200 5 LKGHTGGVTCVAFSP-DGKLLATGSGDGTIKVWDLETGELLR---------------TLKGHTGPVRDVAASADGTY-LA 67
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 358365890 160 TASGDYTVKIWDIEAGAPKLTLN--LGDiVQSQSWSANGSLLVTTSRDKKLRIWDVRQERPAHETQGHSGAKNSRSVwlG 237
Cdd:cd00200 68 SGSSDKTIRLWDLETGECVRTLTghTSY-VSSVAFSPDGRILSSSSRDKTIKVWDVETGKCLTTLRGHTDWVNSVAF--S 144
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 358365890 238 EHDRIATTGfskMSDRQLALWDIRAPREpingFKTL----DSISGVCmpfWDEGTQCLYLAGrGDGNIRYFELENDKFEY 313
Cdd:cd00200 145 PDGTFVASS---SQDGTIKLWDLRTGKC----VATLtghtGEVNSVA---FSPDGEKLLSSS-SDGTIKLWDLSTGKCLG 213
|
250
....*....|....*....
gi 358365890 314 LAEYKSaDPQRGIAFMPKR 332
Cdd:cd00200 214 TLRGHE-NGVNSVAFSPDG 231
|
|
| WD40 |
COG2319 |
WD40 repeat [General function prediction only]; |
75-265 |
1.84e-26 |
|
WD40 repeat [General function prediction only];
Pssm-ID: 441893 [Multi-domain] Cd Length: 403 Bit Score: 111.93 E-value: 1.84e-26
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 358365890 75 ERIPLFRGHTAVVLDTDWNPfNDDLIASGSDDGKVFLWRVPENftlrpdldpdeiqdvAPVGKLSGHPKKIGHVLFNPAa 154
Cdd:COG2319 153 KLLRTLTGHSGAVTSVAFSP-DGKLLASGSDDGTVRLWDLATG---------------KLLRTLTGHTGAVRSVAFSPD- 215
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 358365890 155 ENILATASGDYTVKIWDIEAGAPKLTLNL-GDIVQSQSWSANGSLLVTTSRDKKLRIWDVRQERPAHETQGHSGAknSRS 233
Cdd:COG2319 216 GKLLASGSADGTVRLWDLATGKLLRTLTGhSGSVRSVAFSPDGRLLASGSADGTVRLWDLATGELLRTLTGHSGG--VNS 293
|
170 180 190
....*....|....*....|....*....|...
gi 358365890 234 V-WLGEHDRIATTGfskmSDRQLALWDIRAPRE 265
Cdd:COG2319 294 VaFSPDGKLLASGS----DDGTVRLWDLATGKL 322
|
|
| WD40 |
COG2319 |
WD40 repeat [General function prediction only]; |
74-261 |
8.98e-26 |
|
WD40 repeat [General function prediction only];
Pssm-ID: 441893 [Multi-domain] Cd Length: 403 Bit Score: 110.00 E-value: 8.98e-26
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 358365890 74 PERIPLFRGHTAVVLDTDWNPfNDDLIASGSDDGKVFLWrvpenftlrpDLDPDEiqdvaPVGKLSGHPKKIGHVLFNPA 153
Cdd:COG2319 236 GKLLRTLTGHSGSVRSVAFSP-DGRLLASGSADGTVRLW----------DLATGE-----LLRTLTGHSGGVNSVAFSPD 299
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 358365890 154 AeNILATASGDYTVKIWDIEAGAPKLTLN-LGDIVQSQSWSANGSLLVTTSRDKKLRIWDVRQERPAHETQGHSGAKNSr 232
Cdd:COG2319 300 G-KLLASGSDDGTVRLWDLATGKLLRTLTgHTGAVRSVAFSPDGKTLASGSDDGTVRLWDLATGELLRTLTGHTGAVTS- 377
|
170 180
....*....|....*....|....*....
gi 358365890 233 SVWLGEHDRIATTGFskmsDRQLALWDIR 261
Cdd:COG2319 378 VAFSPDGRTLASGSA----DGTVRLWDLA 402
|
|
| WD40 |
COG2319 |
WD40 repeat [General function prediction only]; |
74-330 |
7.97e-25 |
|
WD40 repeat [General function prediction only];
Pssm-ID: 441893 [Multi-domain] Cd Length: 403 Bit Score: 106.92 E-value: 7.97e-25
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 358365890 74 PERIPLFRGHTAVVLDTDWNPfNDDLIASGSDDGKVFLWRVpenftlrpdldpdeiQDVAPVGKLSGHPKKIGHVLFNPa 153
Cdd:COG2319 110 GLLLRTLTGHTGAVRSVAFSP-DGKTLASGSADGTVRLWDL---------------ATGKLLRTLTGHSGAVTSVAFSP- 172
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 358365890 154 AENILATASGDYTVKIWDIEAGAPKLTLNL-GDIVQSQSWSANGSLLVTTSRDKKLRIWDVRQERPAHETQGHSGAknSR 232
Cdd:COG2319 173 DGKLLASGSDDGTVRLWDLATGKLLRTLTGhTGAVRSVAFSPDGKLLASGSADGTVRLWDLATGKLLRTLTGHSGS--VR 250
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 358365890 233 SV-WLGEHDRIATTGfskmSDRQLALWDIRAPREPINGFKTLDSISGVCM-PfwdEGTqclYLA-GRGDGNIRYFELEND 309
Cdd:COG2319 251 SVaFSPDGRLLASGS----ADGTVRLWDLATGELLRTLTGHSGGVNSVAFsP---DGK---LLAsGSDDGTVRLWDLATG 320
|
250 260
....*....|....*....|..
gi 358365890 310 KFeyLAEYK-SADPQRGIAFMP 330
Cdd:COG2319 321 KL--LRTLTgHTGAVRSVAFSP 340
|
|
| WD40 |
cd00200 |
WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions ... |
80-259 |
2.22e-22 |
|
WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment.
Pssm-ID: 238121 [Multi-domain] Cd Length: 289 Bit Score: 97.41 E-value: 2.22e-22
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 358365890 80 FRGHTAVVLDTDWNPFNDdLIASGSDDGKVFLWrvpenftlrpdlDPDEIQdvaPVGKLSGHPKKIGHVLFNPAAENiLA 159
Cdd:cd00200 131 LRGHTDWVNSVAFSPDGT-FVASSSQDGTIKLW------------DLRTGK---CVATLTGHTGEVNSVAFSPDGEK-LL 193
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 358365890 160 TASGDYTVKIWDIEAGAPKLTLNL-GDIVQSQSWSANGSLLVTTSRDKKLRIWDVRQERPAHETQGHSGAKNSrSVWLGE 238
Cdd:cd00200 194 SSSSDGTIKLWDLSTGKCLGTLRGhENGVNSVAFSPDGYLLASGSEDGTIRVWDLRTGECVQTLSGHTNSVTS-LAWSPD 272
|
170 180
....*....|....*....|.
gi 358365890 239 HDRIATTGFskmsDRQLALWD 259
Cdd:cd00200 273 GKRLASGSA----DGTIRIWD 289
|
|
| WD40 |
COG2319 |
WD40 repeat [General function prediction only]; |
74-265 |
3.35e-22 |
|
WD40 repeat [General function prediction only];
Pssm-ID: 441893 [Multi-domain] Cd Length: 403 Bit Score: 99.22 E-value: 3.35e-22
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 358365890 74 PERIPLFRGHTAVVLDTDWNPfNDDLIASGSDDGKVFLWRVPENFTLRPdldpdeiqdvapvgkLSGHPKKIGHVLFNPA 153
Cdd:COG2319 68 GALLATLLGHTAAVLSVAFSP-DGRLLASASADGTVRLWDLATGLLLRT---------------LTGHTGAVRSVAFSPD 131
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 358365890 154 AEnILATASGDYTVKIWDIEAGAPKLTLNL-GDIVQSQSWSANGSLLVTTSRDKKLRIWDVRQERPAHETQGHSGAKNSr 232
Cdd:COG2319 132 GK-TLASGSADGTVRLWDLATGKLLRTLTGhSGAVTSVAFSPDGKLLASGSDDGTVRLWDLATGKLLRTLTGHTGAVRS- 209
|
170 180 190
....*....|....*....|....*....|...
gi 358365890 233 SVWLGEHDRIATTGfskmSDRQLALWDIRAPRE 265
Cdd:COG2319 210 VAFSPDGKLLASGS----ADGTVRLWDLATGKL 238
|
|
| WD40 |
cd00200 |
WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions ... |
134-311 |
1.81e-19 |
|
WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment.
Pssm-ID: 238121 [Multi-domain] Cd Length: 289 Bit Score: 88.93 E-value: 1.81e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 358365890 134 PVGKLSGHPKKIGHVLFNPaAENILATASGDYTVKIWDIEAGAPKLTL-NLGDIVQSQSWSANGSLLVTTSRDKKLRIWD 212
Cdd:cd00200 1 LRRTLKGHTGGVTCVAFSP-DGKLLATGSGDGTIKVWDLETGELLRTLkGHTGPVRDVAASADGTYLASGSSDKTIRLWD 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 358365890 213 VRQERPAHETQGHSGAKNSrSVWLgEHDRIATTGfskMSDRQLALWDIRAPREpingFKTLDSISG-VCMPFWDEGTQcL 291
Cdd:cd00200 80 LETGECVRTLTGHTSYVSS-VAFS-PDGRILSSS---SRDKTIKVWDVETGKC----LTTLRGHTDwVNSVAFSPDGT-F 149
|
170 180
....*....|....*....|
gi 358365890 292 YLAGRGDGNIRYFELENDKF 311
Cdd:cd00200 150 VASSSQDGTIKLWDLRTGKC 169
|
|
| WD40_4 |
pfam16300 |
Type of WD40 repeat; Most members of this family form part of the 7-bladed beta-propeller at ... |
353-395 |
2.25e-17 |
|
Type of WD40 repeat; Most members of this family form part of the 7-bladed beta-propeller at the N-terminus of coronin proteins.
Pssm-ID: 465087 [Multi-domain] Cd Length: 44 Bit Score: 75.63 E-value: 2.25e-17
10 20 30 40
....*....|....*....|....*....|....*....|....
gi 358365890 353 IEPISFIVPRRA-ETFQDDIYPPTTGLKPAMGPSEWLAGKEAIP 395
Cdd:pfam16300 1 IEPISFTVPRKSkEDFQDDLYPDTAGTEPALTAEEWLSGKNAEP 44
|
|
| WD40 |
cd00200 |
WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions ... |
79-171 |
6.93e-09 |
|
WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment.
Pssm-ID: 238121 [Multi-domain] Cd Length: 289 Bit Score: 57.34 E-value: 6.93e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 358365890 79 LFRGHTAVVLDTDWNPfNDDLIASGSDDGKVFLWrvpenftlrpDLDPDEiqdvaPVGKLSGHPKKIGHVLFNPAAeNIL 158
Cdd:cd00200 214 TLRGHENGVNSVAFSP-DGYLLASGSEDGTIRVW----------DLRTGE-----CVQTLSGHTNSVTSLAWSPDG-KRL 276
|
90
....*....|...
gi 358365890 159 ATASGDYTVKIWD 171
Cdd:cd00200 277 ASGSADGTIRIWD 289
|
|
| PLN00181 |
PLN00181 |
protein SPA1-RELATED; Provisional |
83-306 |
3.88e-08 |
|
protein SPA1-RELATED; Provisional
Pssm-ID: 177776 [Multi-domain] Cd Length: 793 Bit Score: 56.25 E-value: 3.88e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 358365890 83 HTAVVLDTDWNPFNDDLIASGSDDGKVFLWRVPENFTLrpdldpDEIQDVApvgklsghpkKIGHVLFNPAAENILATAS 162
Cdd:PLN00181 574 HEKRVWSIDYSSADPTLLASGSDDGSVKLWSINQGVSI------GTIKTKA----------NICCVQFPSESGRSLAFGS 637
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 358365890 163 GDYTVKIWDIEagAPKLTLnLGDIVQSQSWS----ANGSLLVTTSRDKKLRIWDVR------QERPAHETQGHSGAKNsr 232
Cdd:PLN00181 638 ADHKVYYYDLR--NPKLPL-CTMIGHSKTVSyvrfVDSSTLVSSSTDNTLKLWDLSmsisgiNETPLHSFMGHTNVKN-- 712
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 358365890 233 SVWLGEHDRIATTGfskmSDRQLALWDIRAPREPING--FKTLDSISG------------VCmpfWdEGTQCLYLAGRGD 298
Cdd:PLN00181 713 FVGLSVSDGYIATG----SETNEVFVYHKAFPMPVLSykFKTIDPVSGlevddasqfissVC---W-RGQSSTLVAANST 784
|
....*...
gi 358365890 299 GNIRYFEL 306
Cdd:PLN00181 785 GNIKILEM 792
|
|
| WD40 |
COG2319 |
WD40 repeat [General function prediction only]; |
130-310 |
4.71e-08 |
|
WD40 repeat [General function prediction only];
Pssm-ID: 441893 [Multi-domain] Cd Length: 403 Bit Score: 55.69 E-value: 4.71e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 358365890 130 QDVAPVGKLSGHPKKIGHVLFNPAAEnILATASGDYTVKIWDIEAGAPKLTLNLG-DIVQSQSWSANGSLLVTTSRDKKL 208
Cdd:COG2319 24 ALGALLLLLLGLAAAVASLAASPDGA-RLAAGAGDLTLLLLDAAAGALLATLLGHtAAVLSVAFSPDGRLLASASADGTV 102
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 358365890 209 RIWDVRQERPAHETQGHSGAKNSRSvWLGEHDRIATTGfskmSDRQLALWDIRAPREPingfKTL----DSISGVCmpFW 284
Cdd:COG2319 103 RLWDLATGLLLRTLTGHTGAVRSVA-FSPDGKTLASGS----ADGTVRLWDLATGKLL----RTLtghsGAVTSVA--FS 171
|
170 180
....*....|....*....|....*..
gi 358365890 285 DEGTqclYLA-GRGDGNIRYFELENDK 310
Cdd:COG2319 172 PDGK---LLAsGSDDGTVRLWDLATGK 195
|
|
| PLN00181 |
PLN00181 |
protein SPA1-RELATED; Provisional |
92-268 |
6.78e-07 |
|
protein SPA1-RELATED; Provisional
Pssm-ID: 177776 [Multi-domain] Cd Length: 793 Bit Score: 52.40 E-value: 6.78e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 358365890 92 WNPFNDDLIASGSDDGKVFLWRVPENftlrpdldpdeiqdvAPVGKLSGHPKKIGHVLFNPAAENILATASGDYTVKIWD 171
Cdd:PLN00181 540 WNSYIKSQVASSNFEGVVQVWDVARS---------------QLVTEMKEHEKRVWSIDYSSADPTLLASGSDDGSVKLWS 604
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 358365890 172 IEAGAPKLTLNL-GDIVQSQSWSANGSLLVTTSRDKKLRIWDVRQER-PAHETQGHSgaKNSRSVWLGEhdriATTGFSK 249
Cdd:PLN00181 605 INQGVSIGTIKTkANICCVQFPSESGRSLAFGSADHKVYYYDLRNPKlPLCTMIGHS--KTVSYVRFVD----SSTLVSS 678
|
170
....*....|....*....
gi 358365890 250 MSDRQLALWDIRAPREPIN 268
Cdd:PLN00181 679 STDNTLKLWDLSMSISGIN 697
|
|
| WD40 |
smart00320 |
WD40 repeats; Note that these repeats are permuted with respect to the structural repeats ... |
80-112 |
3.18e-06 |
|
WD40 repeats; Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.
Pssm-ID: 197651 [Multi-domain] Cd Length: 40 Bit Score: 44.23 E-value: 3.18e-06
10 20 30
....*....|....*....|....*....|...
gi 358365890 80 FRGHTAVVLDTDWNPfNDDLIASGSDDGKVFLW 112
Cdd:smart00320 8 LKGHTGPVTSVAFSP-DGKYLASGSDDGTIKLW 39
|
|
| WD40 |
smart00320 |
WD40 repeats; Note that these repeats are permuted with respect to the structural repeats ... |
134-171 |
1.36e-05 |
|
WD40 repeats; Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.
Pssm-ID: 197651 [Multi-domain] Cd Length: 40 Bit Score: 42.30 E-value: 1.36e-05
10 20 30
....*....|....*....|....*....|....*...
gi 358365890 134 PVGKLSGHPKKIGHVLFNPAaENILATASGDYTVKIWD 171
Cdd:smart00320 4 LLKTLKGHTGPVTSVAFSPD-GKYLASGSDDGTIKLWD 40
|
|
| WD40 |
pfam00400 |
WD domain, G-beta repeat; |
80-112 |
2.11e-05 |
|
WD domain, G-beta repeat;
Pssm-ID: 459801 [Multi-domain] Cd Length: 39 Bit Score: 41.56 E-value: 2.11e-05
10 20 30
....*....|....*....|....*....|...
gi 358365890 80 FRGHTAVVLDTDWNPfNDDLIASGSDDGKVFLW 112
Cdd:pfam00400 7 LEGHTGSVTSLAFSP-DGKLLASGSDDGTVKVW 38
|
|
| WD40 |
pfam00400 |
WD domain, G-beta repeat; |
134-171 |
6.98e-05 |
|
WD domain, G-beta repeat;
Pssm-ID: 459801 [Multi-domain] Cd Length: 39 Bit Score: 40.41 E-value: 6.98e-05
10 20 30
....*....|....*....|....*....|....*...
gi 358365890 134 PVGKLSGHPKKIGHVLFNPAaENILATASGDYTVKIWD 171
Cdd:pfam00400 3 LLKTLEGHTGSVTSLAFSPD-GKLLASGSDDGTVKVWD 39
|
|
| flhF |
PRK06995 |
flagellar biosynthesis protein FlhF; |
455-585 |
2.43e-04 |
|
flagellar biosynthesis protein FlhF;
Pssm-ID: 235904 [Multi-domain] Cd Length: 484 Bit Score: 43.80 E-value: 2.43e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 358365890 455 VAKPAPSMKEQGASMAAMVSKFADDEEAETVEEDSSF----EEVQKPVERPARSPEASSPSIKASPWHQKEEEVKTQAAS 530
Cdd:PRK06995 55 AAAAPAAAQPPPAAAPAAVSRPAAPAAEPAPWLVEHAkrltAQREQLVARAAAPAAPEAQAPAAPAERAAAENAARRLAR 134
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 358365890 531 PAKSSPViTPVAAPAdistgAAVAADAVQR------------EIGAIKDLIAEQTKTIASQAQQMQS 585
Cdd:PRK06995 135 AAAAAPR-PRVPADA-----AAAVADAVKArierivndtvmqELRSLRGMLEEQLASLAWGERQRRD 195
|
|
| WD40 |
pfam00400 |
WD domain, G-beta repeat; |
185-212 |
7.40e-04 |
|
WD domain, G-beta repeat;
Pssm-ID: 459801 [Multi-domain] Cd Length: 39 Bit Score: 37.32 E-value: 7.40e-04
10 20
....*....|....*....|....*...
gi 358365890 185 DIVQSQSWSANGSLLVTTSRDKKLRIWD 212
Cdd:pfam00400 12 GSVTSLAFSPDGKLLASGSDDGTVKVWD 39
|
|
| WD40 |
smart00320 |
WD40 repeats; Note that these repeats are permuted with respect to the structural repeats ... |
191-212 |
9.90e-04 |
|
WD40 repeats; Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.
Pssm-ID: 197651 [Multi-domain] Cd Length: 40 Bit Score: 36.91 E-value: 9.90e-04
|
| WD40 |
COG2319 |
WD40 repeat [General function prediction only]; |
158-279 |
1.81e-03 |
|
WD40 repeat [General function prediction only];
Pssm-ID: 441893 [Multi-domain] Cd Length: 403 Bit Score: 41.05 E-value: 1.81e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 358365890 158 LATASGDYTVKIWDIEAGAPKLTLNLG-DIVQSQSWSANGSLLVTTSRDKKLRIWDVRQERPAHETQGHSGAKNSRSVWL 236
Cdd:COG2319 9 LAAASADLALALLAAALGALLLLLLGLaAAVASLAASPDGARLAAGAGDLTLLLLDAAAGALLATLLGHTAAVLSVAFSP 88
|
90 100 110 120
....*....|....*....|....*....|....*....|...
gi 358365890 237 GEHdRIATTGfskmSDRQLALWDIRAPREPINGFKTLDSISGV 279
Cdd:COG2319 89 DGR-LLASAS----ADGTVRLWDLATGLLLRTLTGHTGAVRSV 126
|
|
| NBCH_WD40 |
pfam20426 |
Neurobeachin beta propeller domain; This entry represents the beta propeller domain found at ... |
117-218 |
2.12e-03 |
|
Neurobeachin beta propeller domain; This entry represents the beta propeller domain found at the C-terminus of neurobeachin-like proteins.
Pssm-ID: 466575 [Multi-domain] Cd Length: 350 Bit Score: 40.83 E-value: 2.12e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 358365890 117 NFTLRPDLDPD-EI-QDVAPvgklsghPKKIGhvlfNPAAENI---------LATASGDYTVKIWDIEAGAPKLTLNLGD 185
Cdd:pfam20426 47 NFTFSGSQDPFfGIgSDVLS-------PRKIG----SPLAENVelgaqcfatLQTPSENFLISCGNWENSFQVISLNDGR 115
|
90 100 110 120
....*....|....*....|....*....|....*....|...
gi 358365890 186 IVQSQ----------SWSANGSLLVTTSRDKKLRIWDVRQERP 218
Cdd:pfam20426 116 MVQSIrqhkdvvscvAVTSDGSILATGSYDTTVMVWEVLRGRS 158
|
|
| DedD |
COG3147 |
Cell division protein DedD (periplasmic protein involved in septation) [Cell cycle control, ... |
494-567 |
7.18e-03 |
|
Cell division protein DedD (periplasmic protein involved in septation) [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 442381 [Multi-domain] Cd Length: 140 Bit Score: 37.45 E-value: 7.18e-03
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 358365890 494 VQKPVERPARSPEASSPSIKASPW--HQKEEEVKTQAASPAKSSPVITPVAAPADISTGAAVAADAVQreIGAIKD 567
Cdd:COG3147 2 AEEAAAAPAAAAAPAAPAAAAAPApaAAAAAAAPKPAAKPAAPKPAAAAAAAPAAKAAAPAGGGWVVQ--LGAFSN 75
|
|
|