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Conserved domains on  [gi|3582133|dbj|BAA33033|]
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NADH dehydrogenase subunit 6 (mitochondrion) [Lycodon semicarinatus]

Protein Classification

NADH dehydrogenase subunit 6( domain architecture ID 10009572)

NADH dehydrogenase subunit 6 is the core subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I) that functions in the transfer of electrons from NADH to the respiratory chain

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
ND6 MTH00115
NADH dehydrogenase subunit 6; Provisional
 24-166 2.50e-30

NADH dehydrogenase subunit 6; Provisional


:

Pssm-ID: 214424  Cd Length: 174  Bit Score: 108.30  E-value: 2.50e-30
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 3582133    24 APYQGVVALMGVSFFCCIFMVFLGRTFAALVMYIVYLGGLVVVFGYCVSVEKES------GIYSVGGTKYFIVCVSLLLV 97
Cdd:MTH00115  24 SPYYGVVSLVLASVFGCGVLVSLGGSFVSLVLFLVYLGGMLVVFAYSVSLAADPypeawgDWGVVGYVVGFVLVVVVVGV 103

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 3582133    98 VLLCLLREVGGLLVYVNWGDL--VCLEMNGVGVFYFSGGWGLIVCSWGLLVVLFSILVILSWSRLGGLRPF 166
Cdd:MTH00115 104 VVGGLWGMEGVGVVTVDSGGLfvVRLDFSGVSLFYSSGGGGLLVCGWGLLLTLFVVLELVRGLSRGALRAF 174
 
Name Accession Description Interval E-value
ND6 MTH00115
NADH dehydrogenase subunit 6; Provisional
 24-166 2.50e-30

NADH dehydrogenase subunit 6; Provisional


Pssm-ID: 214424  Cd Length: 174  Bit Score: 108.30  E-value: 2.50e-30
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 3582133    24 APYQGVVALMGVSFFCCIFMVFLGRTFAALVMYIVYLGGLVVVFGYCVSVEKES------GIYSVGGTKYFIVCVSLLLV 97
Cdd:MTH00115  24 SPYYGVVSLVLASVFGCGVLVSLGGSFVSLVLFLVYLGGMLVVFAYSVSLAADPypeawgDWGVVGYVVGFVLVVVVVGV 103

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 3582133    98 VLLCLLREVGGLLVYVNWGDL--VCLEMNGVGVFYFSGGWGLIVCSWGLLVVLFSILVILSWSRLGGLRPF 166
Cdd:MTH00115 104 VVGGLWGMEGVGVVTVDSGGLfvVRLDFSGVSLFYSSGGGGLLVCGWGLLLTLFVVLELVRGLSRGALRAF 174
 
Name Accession Description Interval E-value
ND6 MTH00115
NADH dehydrogenase subunit 6; Provisional
 24-166 2.50e-30

NADH dehydrogenase subunit 6; Provisional


Pssm-ID: 214424  Cd Length: 174  Bit Score: 108.30  E-value: 2.50e-30
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 3582133    24 APYQGVVALMGVSFFCCIFMVFLGRTFAALVMYIVYLGGLVVVFGYCVSVEKES------GIYSVGGTKYFIVCVSLLLV 97
Cdd:MTH00115  24 SPYYGVVSLVLASVFGCGVLVSLGGSFVSLVLFLVYLGGMLVVFAYSVSLAADPypeawgDWGVVGYVVGFVLVVVVVGV 103

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 3582133    98 VLLCLLREVGGLLVYVNWGDL--VCLEMNGVGVFYFSGGWGLIVCSWGLLVVLFSILVILSWSRLGGLRPF 166
Cdd:MTH00115 104 VVGGLWGMEGVGVVTVDSGGLfvVRLDFSGVSLFYSSGGGGLLVCGWGLLLTLFVVLELVRGLSRGALRAF 174
ND6 MTH00065
NADH dehydrogenase subunit 6; Provisional
 25-164 3.76e-08

NADH dehydrogenase subunit 6; Provisional


Pssm-ID: 214415  Cd Length: 172  Bit Score: 50.23  E-value: 3.76e-08
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 3582133    25 PYQGVVALMGVSFFCCIFMVFLGRTFAALVMYIVYLGGLVVVFGYCVSVEKES-----GIYSVGGTKYFIVCVSLLLVVL 99
Cdd:MTH00065  25 PYFAALGLVLGAVCGCLVLVELGVSFLSLVLFLIYLGGMLVVFAYSAALAAEPypeawGSWSVLVYVLFYLLLLIVGYIL 104

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 3582133   100 LCLLREVGGLLVYVNWG-DLVCLEMNGVGVFYFSGGWGLIVCSWGLLVVLFSILVILSWSRLGGLR 164
Cdd:MTH00065 105 FGCNFSLEFLFTNYDTEfSVVGYDWGGVGLMYSSGGWFLMISGWVLLLTLFVVLEVTRGLSRGSLR 170
ND6 MTH00138
NADH dehydrogenase subunit 6; Provisional
 24-152 4.78e-08

NADH dehydrogenase subunit 6; Provisional


Pssm-ID: 177196  Cd Length: 173  Bit Score: 49.75  E-value: 4.78e-08
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 3582133    24 APYQGVVALMGVSFFCCIFMVFLGRTFAALVMYIVYLGGLVVVFGYCVSVEKES-----GIYSVGGTKYFIVCVSLLLVV 98
Cdd:MTH00138  24 SPYFAALGLVVVAGVGCGVLVGHGGSFLSLVLFLIYLGGMLVVFAYSAALAAEPypeswGSWSVLGYVVGYLVGVVLAAG 103

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|....*.
gi 3582133    99 LLCLLREVGGLLVYVNWGDL--VCLEMNGVGVFYFSGGWGLIVCSWGLLVVLFSIL 152
Cdd:MTH00138 104 LFWGGWYEGSWVVVDELKEFsvLRGDVGGVALMYSSGGGMLVICAWVLLLTLFVVL 159
ND6 MTH00214
NADH dehydrogenase subunit 6; Provisional
 24-164 1.79e-05

NADH dehydrogenase subunit 6; Provisional


Pssm-ID: 214461  Cd Length: 168  Bit Score: 42.67  E-value: 1.79e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 3582133    24 APYQGVVALMGVSFFCCIFMVFLGRTFAALVMYIVYLGGLVVVFGYCVSVEKESGIYSVGGTKYFIVCVSLLLVVLLCLL 103
Cdd:MTH00214  24 SPYFGALGLVLLALLGCFLLLSHGNSFLGLILFLIYLGGMLVVFSYSAALAADPYPESWGGWSVLLFFLFYLLGLGFVGF 103

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 3582133   104 REVGGLLVYVNWGDLVC--LEMNGVGVFYFSGGWGLIVCSWGLLVVLFSILVILSWSRLGGLR 164
Cdd:MTH00214 104 YFYGGWEMLSWMGVDEAnnLDLSGVSDLYSRGFFLLLLGGVVLFLVLFVVLELVRGLSRGALR 166
ND6 MTH00045
NADH dehydrogenase subunit 6; Validated
 25-154 6.53e-05

NADH dehydrogenase subunit 6; Validated


Pssm-ID: 177120  Cd Length: 162  Bit Score: 41.04  E-value: 6.53e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 3582133    25 PYQGVVALMGVSFFCCIFMVFLGRTFAALVMYIVYLGGLVVVFGYCVSVEKESgIYSVGGTKYFIVCVSLLLVVLLCLLR 104
Cdd:MTH00045  23 PYYSALGLVLVSLSGCLLLSLLGLSFLALLLLLIYMGGMLVVFVYSSALSAER-YPSVSNLGEVLVLSLLLSLWVFISFD 101

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|
gi 3582133   105 EVGGLLVYvNWGDLVCLEMNGVGVFYFSGGWGLIVCSWGLLVVLFSILVI 154
Cdd:MTH00045 102 NFLELSNN-NWSLVSLSDLVGSSELYNSGGLYLLLGGFILLVALVVALVI 150
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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