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Conserved domains on  [gi|357548855|gb|EHJ30711|]
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hypothetical protein HMPREF0541_01582 [Lacticaseibacillus rhamnosus ATCC 21052]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
MdoB super family cl34240
Phosphoglycerol transferase MdoB/OpgB, AlkP superfamily [Cell wall/membrane/envelope ...
 11-95 3.62e-03

Phosphoglycerol transferase MdoB/OpgB, AlkP superfamily [Cell wall/membrane/envelope biogenesis];


The actual alignment was detected with superfamily member COG1368:

Pssm-ID: 440979 [Multi-domain]  Cd Length: 576  Bit Score: 35.01  E-value: 3.62e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 357548855  11 VVCWSVLITLIVPWVFPLFHISTAVRVGVLFILINM-----LSALWIGRTIRRHHLSWWWLFVLPVLFTLMVFLRYKWYA 85
Cdd:COG1368    7 LLLSLRLVFLLFNFDLSLGEILQAFLYGLRFILYLLlllllLLLLLLPLLFRRPKLRWIYLLLVLLLLLLLLVADILYYR 86

                         90
                 ....*....|
gi 357548855  86 YFFAPIYLLL 95
Cdd:COG1368   87 FFGDRLNFSD 96
 
Name Accession Description Interval E-value
MdoB COG1368
Phosphoglycerol transferase MdoB/OpgB, AlkP superfamily [Cell wall/membrane/envelope ...
 11-95 3.62e-03

Phosphoglycerol transferase MdoB/OpgB, AlkP superfamily [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 440979 [Multi-domain]  Cd Length: 576  Bit Score: 35.01  E-value: 3.62e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 357548855  11 VVCWSVLITLIVPWVFPLFHISTAVRVGVLFILINM-----LSALWIGRTIRRHHLSWWWLFVLPVLFTLMVFLRYKWYA 85
Cdd:COG1368    7 LLLSLRLVFLLFNFDLSLGEILQAFLYGLRFILYLLlllllLLLLLLPLLFRRPKLRWIYLLLVLLLLLLLLVADILYYR 86

                         90
                 ....*....|
gi 357548855  86 YFFAPIYLLL 95
Cdd:COG1368   87 FFGDRLNFSD 96
 
Name Accession Description Interval E-value
MdoB COG1368
Phosphoglycerol transferase MdoB/OpgB, AlkP superfamily [Cell wall/membrane/envelope ...
 11-95 3.62e-03

Phosphoglycerol transferase MdoB/OpgB, AlkP superfamily [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 440979 [Multi-domain]  Cd Length: 576  Bit Score: 35.01  E-value: 3.62e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 357548855  11 VVCWSVLITLIVPWVFPLFHISTAVRVGVLFILINM-----LSALWIGRTIRRHHLSWWWLFVLPVLFTLMVFLRYKWYA 85
Cdd:COG1368    7 LLLSLRLVFLLFNFDLSLGEILQAFLYGLRFILYLLlllllLLLLLLPLLFRRPKLRWIYLLLVLLLLLLLLVADILYYR 86

                         90
                 ....*....|
gi 357548855  86 YFFAPIYLLL 95
Cdd:COG1368   87 FFGDRLNFSD 96
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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