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Conserved domains on  [gi|357017941|ref|YP_004934964|]
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ATP synthase F0 subunit 6 (mitochondrion) [Pielomastax zhengi]

Protein Classification

ATP synthase F0 subunit 6( domain architecture ID 10009593)

ATP synthase F0 subunit 6 is part of the mitochondrial membrane ATP synthase (F1F0 ATP synthase or Complex V), which produces ATP from ADP in the presence of a proton gradient across the membrane which is generated by electron transport complexes of the respiratory chain

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
ATP6 MTH00157
ATP synthase F0 subunit 6; Provisional
 1-225 5.53e-93

ATP synthase F0 subunit 6; Provisional


:

Pssm-ID: 214441  Cd Length: 223  Bit Score: 271.66  E-value: 5.53e-93
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 357017941   1 MMSNLFSSFDPSTSiFSFSINWMSTLIGVLLISCLYWLSPSRTNFIWNNSNLTLNAEFKILLGKNSNlGMTIMFISLFCM 80
Cdd:MTH00157   1 MMTNLFSIFDPSTS-FNLSLNWLSTFLGLLFIPSSFWLIPSRYNILWNKILKTLHKEFKTLLGPKNK-GSTLIFISLFSF 78

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 357017941  81 IMLNNLLGLFPYVFTSSSHMVFTLSIALPLWISFMMYGWMNIFPHMFAHLVPNSTPNVLMPFMVLIETISNIIRPLTLAV 160
Cdd:MTH00157  79 ILFNNFLGLFPYIFTSTSHLSLTLSLALPLWLSFMLFGWINNTNHMFAHLVPQGTPPILMPFMVLIETISNLIRPGTLAV 158

                        170       180       190       200       210       220
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 357017941 161 RLTANMIAGHLLLTLIGNTGPTMNFNMMIIMLIMQMALLVLESAVAIIQAYVFSVLSTLYSSETY 225
Cdd:MTH00157 159 RLAANMIAGHLLLTLLGNTGPSLSSMILSILILIQILLLILESAVAIIQSYVFSVLSTLYSSEVN 223
 
Name Accession Description Interval E-value
ATP6 MTH00157
ATP synthase F0 subunit 6; Provisional
 1-225 5.53e-93

ATP synthase F0 subunit 6; Provisional


Pssm-ID: 214441  Cd Length: 223  Bit Score: 271.66  E-value: 5.53e-93
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 357017941   1 MMSNLFSSFDPSTSiFSFSINWMSTLIGVLLISCLYWLSPSRTNFIWNNSNLTLNAEFKILLGKNSNlGMTIMFISLFCM 80
Cdd:MTH00157   1 MMTNLFSIFDPSTS-FNLSLNWLSTFLGLLFIPSSFWLIPSRYNILWNKILKTLHKEFKTLLGPKNK-GSTLIFISLFSF 78

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 357017941  81 IMLNNLLGLFPYVFTSSSHMVFTLSIALPLWISFMMYGWMNIFPHMFAHLVPNSTPNVLMPFMVLIETISNIIRPLTLAV 160
Cdd:MTH00157  79 ILFNNFLGLFPYIFTSTSHLSLTLSLALPLWLSFMLFGWINNTNHMFAHLVPQGTPPILMPFMVLIETISNLIRPGTLAV 158

                        170       180       190       200       210       220
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 357017941 161 RLTANMIAGHLLLTLIGNTGPTMNFNMMIIMLIMQMALLVLESAVAIIQAYVFSVLSTLYSSETY 225
Cdd:MTH00157 159 RLAANMIAGHLLLTLLGNTGPSLSSMILSILILIQILLLILESAVAIIQSYVFSVLSTLYSSEVN 223
ATP_synt_6_or_A TIGR01131
ATP synthase subunit 6 (eukaryotes),also subunit A (prokaryotes); Bacterial forms should be ...
 5-223 8.07e-45

ATP synthase subunit 6 (eukaryotes),also subunit A (prokaryotes); Bacterial forms should be designated ATP synthase, F0 subunit A; eukaryotic (chloroplast and mitochondrial) forms should be designated ATP synthase, F0 subunit 6. The F1/F0 ATP synthase is a multisubunit, membrane associated enzyme found in bacteria and mitochondria and chloroplast. This enzyme is principally involved in the synthesis of ATP from ADP and inorganic phosphate by coupling the energy derived from the proton electrochemical gradient across the biological membrane. A brief description of this multisubunit enzyme complex: F1 and F0 represent two major clusters of subunits. Individual subunits in each of these clusters are named differently in prokaryotes and in organelles e.g., mitochondria and chloroplast. The bacterial equivalent of subunit 6 is named subunit 'A'. It has been shown that proton is conducted though this subunit. Typically, deprotonation and reprotonation of the acidic amino acid side-chains are implicated in the process. [Energy metabolism, ATP-proton motive force interconversion]


Pssm-ID: 273458  Cd Length: 226  Bit Score: 149.28  E-value: 8.07e-45
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 357017941    5 LFSSFDPST-SIFSFSINWMSTLIGVLLI----SCLYWLSPSRTNFIWNNSNLTLNAEFKILLGkNSNLGMTIMFISLFC 79
Cdd:TIGR01131   1 LFSQFDISPiTLFSLTLLSLILLLSLLIFlissSLSRWLIPSRWQNLMESIYEFVLSIVKSQIG-GKKGKFFPLIFTLFL 79

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 357017941   80 MIMLNNLLGLFPYVFTSSSHMVFTLSIALPLWISFMMYGWMNIFPHMFAHLVPNSTPNVLMPFMVLIETISNIIRPLTLA 159
Cdd:TIGR01131  80 FILISNLLGLIPYSFTPTSHLSFTLGLALPLWLGLTISGFRKHPKGFLAHLVPSGTPLPLIPFLVIIETISYLARPISLS 159

                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 357017941  160 VRLTANMIAGHLLLTLIGNTGPT-MNFNMMIIMLIMQMALLVLESAVAIIQAYVFSVLSTLYSSE 223
Cdd:TIGR01131 160 VRLFANISAGHLLLTLLSGLLFSlMSSAIFALLLLILVALIILEIFVAFIQAYVFTLLTCLYLND 224
ATP-synt_Fo_a_6 cd00310
ATP synthase Fo complex, subunit 6 (eukaryotes) and subunit a (prokaryotes); Bacterial forms ...
 73-222 6.12e-43

ATP synthase Fo complex, subunit 6 (eukaryotes) and subunit a (prokaryotes); Bacterial forms are designated as ATP synthase, Fo complex, subunit a; eukaryotic (chloroplast and mitochondrial) forms are designated as ATP synthase, Fo complex, subunit 6. The F-ATP synthases (also called FoF1-ATPases) consist of two structural domains: F1 (factor one) complex containing the soluble catalytic core, and Fo (oligomycin sensitive factor) complex containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. F-ATP synthases are primarily found in the inner membranes of eukaryotic mitochondria, in the thylakoid membranes of chloroplasts or in the plasma membranes of bacteria. F-ATP synthase has also been found in the archaea Methanosarcina acetivorans. F-ATP synthases are the primary producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). Alternatively, under conditions of low driving force, ATP synthases function as ATPases, thus generating a transmembrane proton or Na(+) gradient at the expense of energy derived from ATP hydrolysis.


Pssm-ID: 349411 [Multi-domain]  Cd Length: 156  Bit Score: 142.15  E-value: 6.12e-43
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 357017941  73 MFISLFCMIMLNNLLGLFPYVFTSSSHMVFTLSIALPLWISFMMYGWMNIFPHMFAHLVPNSTPNVLMPFMVLIETISNI 152
Cdd:cd00310    7 LLGTLFLFILFSNLLGLIPYSFTPTSHLNVTLALALIVFLGVHILGIKKHGLGFFLHFLPPGTPLPLAPLMVPIELISEL 86

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 357017941 153 IRPLTLAVRLTANMIAGHLLLTLIGNTGPTMNFNMMIIMLIMQMALLVLESAVAIIQAYVFSVLSTLYSS 222
Cdd:cd00310   87 IRPLSLSVRLFANMFAGHLLLALLSGLVPSLLSSVGLLPLLLPVALTLLELFVAFIQAYVFTLLTAVYIS 156
ATP-synt_A pfam00119
ATP synthase A chain;
73-222 4.05e-28

ATP synthase A chain;


Pssm-ID: 459679 [Multi-domain]  Cd Length: 216  Bit Score: 105.65  E-value: 4.05e-28
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 357017941   73 MFISLFCMIMLNNLLGLF---PYVFTSSSHMVFTLSIALPLWISFMMYG-WMNIFPHMFAHLVPNSTPNVLMPFMVLIET 148
Cdd:pfam00119  60 LLLTLFFFILVSNLLGLIpksPGGFTVTADINVTLALALIVFLLVHYYGiKKHGLGGYFKKLFVPPVPLPLVPLLLPIEI 139

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 357017941  149 ISNIIRPLTLAVRLTANMIAGHLLLTLIGNTGPTM---NFNMMIIMLIMQMALLVLESAVAIIQAYVFSVLSTLYSS 222
Cdd:pfam00119 140 ISEFARPVSLSLRLFGNMLAGHLLLLLLAGLIFALlsaGFLLGVIPPLLGVAWTLFELLVAFIQAYVFTMLTAVYIS 216
AtpB COG0356
FoF1-type ATP synthase, membrane subunit a [Energy production and conversion]; FoF1-type ATP ...
 73-220 1.56e-23

FoF1-type ATP synthase, membrane subunit a [Energy production and conversion]; FoF1-type ATP synthase, membrane subunit a is part of the Pathway/BioSystem: FoF1-type ATP synthase


Pssm-ID: 440125 [Multi-domain]  Cd Length: 212  Bit Score: 93.60  E-value: 1.56e-23
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 357017941  73 MFISLFCMIMLNNLLGLFPYVFTSSSHMVFTLSIALPLWISFMMYG-WMNIFPHMFAHLVPNSTPnVLMPFMVLIETISN 151
Cdd:COG0356   60 LLLTLFLFILVSNLLGLIPGLFPPTADINVTLALALIVFVLVHYYGiKKKGLGGYLKHLFFPPFP-WLAPLMLPIEIISE 138

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 357017941 152 IIRPLTLAVRLTANMIAGHLLLTLIGNTGPTmnFNMMIIMLIMQMALLVLESAVAIIQAYVFSVLSTLY 220
Cdd:COG0356  139 LARPLSLSLRLFGNMFAGHIILLLLAGLAPF--LLLGVLSLLLPVAWTAFELLVGFLQAYIFTMLTAVY 205
 
Name Accession Description Interval E-value
ATP6 MTH00157
ATP synthase F0 subunit 6; Provisional
 1-225 5.53e-93

ATP synthase F0 subunit 6; Provisional


Pssm-ID: 214441  Cd Length: 223  Bit Score: 271.66  E-value: 5.53e-93
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 357017941   1 MMSNLFSSFDPSTSiFSFSINWMSTLIGVLLISCLYWLSPSRTNFIWNNSNLTLNAEFKILLGKNSNlGMTIMFISLFCM 80
Cdd:MTH00157   1 MMTNLFSIFDPSTS-FNLSLNWLSTFLGLLFIPSSFWLIPSRYNILWNKILKTLHKEFKTLLGPKNK-GSTLIFISLFSF 78

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 357017941  81 IMLNNLLGLFPYVFTSSSHMVFTLSIALPLWISFMMYGWMNIFPHMFAHLVPNSTPNVLMPFMVLIETISNIIRPLTLAV 160
Cdd:MTH00157  79 ILFNNFLGLFPYIFTSTSHLSLTLSLALPLWLSFMLFGWINNTNHMFAHLVPQGTPPILMPFMVLIETISNLIRPGTLAV 158

                        170       180       190       200       210       220
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 357017941 161 RLTANMIAGHLLLTLIGNTGPTMNFNMMIIMLIMQMALLVLESAVAIIQAYVFSVLSTLYSSETY 225
Cdd:MTH00157 159 RLAANMIAGHLLLTLLGNTGPSLSSMILSILILIQILLLILESAVAIIQSYVFSVLSTLYSSEVN 223
ATP6 MTH00176
ATP synthase F0 subunit 6; Provisional
 1-225 3.64e-45

ATP synthase F0 subunit 6; Provisional


Pssm-ID: 214449  Cd Length: 229  Bit Score: 150.18  E-value: 3.64e-45
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 357017941   1 MMSNLFSSFDPSTSIF--SFSINWMSTLIGVLLISCLYWLSPSRTNFIWNnSNLTLNAEFKILLGKNSNLGMTIMFISLF 78
Cdd:MTH00176   1 MLVDLFSSFDPPNKNIfsMISLSWITLLLFLLLMPSSVWFCPSKLQVFML-MFSTFLPEMILRSNGSYILGSASIIISLF 79

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 357017941  79 CMIMLNNLLGLFPYVFTSSSHMVFTLSIALPLWISFMMYGWMNIFPHMFAHLVPNSTPNVLMPFMVLIETISNIIRPLTL 158
Cdd:MTH00176  80 ILVMSLNLSGLIPYVFTSTSHLVITLSLALPLWLGVILSGFINNFYSRLSHLVPQGTPPLLNPFLVLIELVSLLIRPLTL 159

                        170       180       190       200       210       220       230
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 357017941 159 AVRLTANMIAGHLLLTLIGNTGP---TMNFNMMIIMLIMQMALLVLESAVAIIQAYVFSVLSTLYSSETY 225
Cdd:MTH00176 160 AVRLAANLSAGHLLLGLLGAAMWgllPVSPLIGFLLLIVQILYFMFEIAVCMIQAYVFTLLLSLYLDEHP 229
ATP_synt_6_or_A TIGR01131
ATP synthase subunit 6 (eukaryotes),also subunit A (prokaryotes); Bacterial forms should be ...
 5-223 8.07e-45

ATP synthase subunit 6 (eukaryotes),also subunit A (prokaryotes); Bacterial forms should be designated ATP synthase, F0 subunit A; eukaryotic (chloroplast and mitochondrial) forms should be designated ATP synthase, F0 subunit 6. The F1/F0 ATP synthase is a multisubunit, membrane associated enzyme found in bacteria and mitochondria and chloroplast. This enzyme is principally involved in the synthesis of ATP from ADP and inorganic phosphate by coupling the energy derived from the proton electrochemical gradient across the biological membrane. A brief description of this multisubunit enzyme complex: F1 and F0 represent two major clusters of subunits. Individual subunits in each of these clusters are named differently in prokaryotes and in organelles e.g., mitochondria and chloroplast. The bacterial equivalent of subunit 6 is named subunit 'A'. It has been shown that proton is conducted though this subunit. Typically, deprotonation and reprotonation of the acidic amino acid side-chains are implicated in the process. [Energy metabolism, ATP-proton motive force interconversion]


Pssm-ID: 273458  Cd Length: 226  Bit Score: 149.28  E-value: 8.07e-45
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 357017941    5 LFSSFDPST-SIFSFSINWMSTLIGVLLI----SCLYWLSPSRTNFIWNNSNLTLNAEFKILLGkNSNLGMTIMFISLFC 79
Cdd:TIGR01131   1 LFSQFDISPiTLFSLTLLSLILLLSLLIFlissSLSRWLIPSRWQNLMESIYEFVLSIVKSQIG-GKKGKFFPLIFTLFL 79

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 357017941   80 MIMLNNLLGLFPYVFTSSSHMVFTLSIALPLWISFMMYGWMNIFPHMFAHLVPNSTPNVLMPFMVLIETISNIIRPLTLA 159
Cdd:TIGR01131  80 FILISNLLGLIPYSFTPTSHLSFTLGLALPLWLGLTISGFRKHPKGFLAHLVPSGTPLPLIPFLVIIETISYLARPISLS 159

                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 357017941  160 VRLTANMIAGHLLLTLIGNTGPT-MNFNMMIIMLIMQMALLVLESAVAIIQAYVFSVLSTLYSSE 223
Cdd:TIGR01131 160 VRLFANISAGHLLLTLLSGLLFSlMSSAIFALLLLILVALIILEIFVAFIQAYVFTLLTCLYLND 224
ATP6 MTH00005
ATP synthase F0 subunit 6; Provisional
 1-223 4.47e-43

ATP synthase F0 subunit 6; Provisional


Pssm-ID: 164583  Cd Length: 231  Bit Score: 144.88  E-value: 4.47e-43
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 357017941   1 MMSNLFSSFDPSTSIFSF----SINWMSTLIGVLLISCLYWLSPSRTNFIWNNSNLTLNAEFKILLGKNSNlGMTIMFIS 76
Cdd:MTH00005   1 MLTDIFSSFDPATNSLFNnlssTAFWAFNFSIILLLSSSFWITPNRLSSIMSPPKSTMHTQLSRTFGKHLK-GFSSLISA 79

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 357017941  77 LFCMIMLNNLLGLFPYVFTSSSHMVFTLSIALPLWISFMMYGWMNIFPHMFAHLVPNSTPNVLMPFMVLIETISNIIRPL 156
Cdd:MTH00005  80 LFTMIILMNLSGLLPYVFSTSSHLIFTLTLGLPLWLSLIMSSVTFSPKKFAAHLLPGGAPDWLNPFLVLIETISILVRPI 159

                        170       180       190       200       210       220       230
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 357017941 157 TLAVRLTANMIAGHLLLTLIGNTGPTMNFNMMIIMLIMQM---ALLVLESAVAIIQAYVFSVLSTLYSSE 223
Cdd:MTH00005 160 TLSFRLAANMSAGHIVLSLIGIYAASALFSSISSTILLILtqmGYILFEVGICLIQAYIFCLLLSLYSDD 229
ATP-synt_Fo_a_6 cd00310
ATP synthase Fo complex, subunit 6 (eukaryotes) and subunit a (prokaryotes); Bacterial forms ...
 73-222 6.12e-43

ATP synthase Fo complex, subunit 6 (eukaryotes) and subunit a (prokaryotes); Bacterial forms are designated as ATP synthase, Fo complex, subunit a; eukaryotic (chloroplast and mitochondrial) forms are designated as ATP synthase, Fo complex, subunit 6. The F-ATP synthases (also called FoF1-ATPases) consist of two structural domains: F1 (factor one) complex containing the soluble catalytic core, and Fo (oligomycin sensitive factor) complex containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. F-ATP synthases are primarily found in the inner membranes of eukaryotic mitochondria, in the thylakoid membranes of chloroplasts or in the plasma membranes of bacteria. F-ATP synthase has also been found in the archaea Methanosarcina acetivorans. F-ATP synthases are the primary producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). Alternatively, under conditions of low driving force, ATP synthases function as ATPases, thus generating a transmembrane proton or Na(+) gradient at the expense of energy derived from ATP hydrolysis.


Pssm-ID: 349411 [Multi-domain]  Cd Length: 156  Bit Score: 142.15  E-value: 6.12e-43
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 357017941  73 MFISLFCMIMLNNLLGLFPYVFTSSSHMVFTLSIALPLWISFMMYGWMNIFPHMFAHLVPNSTPNVLMPFMVLIETISNI 152
Cdd:cd00310    7 LLGTLFLFILFSNLLGLIPYSFTPTSHLNVTLALALIVFLGVHILGIKKHGLGFFLHFLPPGTPLPLAPLMVPIELISEL 86

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 357017941 153 IRPLTLAVRLTANMIAGHLLLTLIGNTGPTMNFNMMIIMLIMQMALLVLESAVAIIQAYVFSVLSTLYSS 222
Cdd:cd00310   87 IRPLSLSVRLFANMFAGHLLLALLSGLVPSLLSSVGLLPLLLPVALTLLELFVAFIQAYVFTLLTAVYIS 156
ATP6 MTH00173
ATP synthase F0 subunit 6; Provisional
 1-224 3.64e-40

ATP synthase F0 subunit 6; Provisional


Pssm-ID: 214448  Cd Length: 231  Bit Score: 137.30  E-value: 3.64e-40
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 357017941   1 MMSNLFSSFDPSTSIFS--FSINWMSTLIGVLLISCLYWLSPSRTNFIWNNSNLTLNAEFKILLGKNSNlGMTIMFISLF 78
Cdd:MTH00173   1 MMVDLFSSFDDHNSSFSslSFLMWLLSLMSLFFFSSSVWVSSSNLSSVFKLFVLTVSSQVTRSSGLNLG-GFSLLLSSLF 79

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 357017941  79 CMIMLNNLLGLFPYVFTSSSHMVFTLSIALPLWISFMMYGWMNIFPHMFAHLVPNSTPNVLMPFMVLIETISNIIRPLTL 158
Cdd:MTH00173  80 LFLISLNLSGLLPFVFSVTSHLAFTFSLALPLWLSLILSGLFYNPSKSLAGLVPAGAPAGLNPFLVLIETVSILIRPLTL 159

                        170       180       190       200       210       220       230
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 357017941 159 AVRLTANMIAGHLLLTLIGNTGPTMNFNMMIIMLIMQMAL----LVLESAVAIIQAYVFSVLSTLYSSET 224
Cdd:MTH00173 160 TVRLLANISAGHIVLTLIGNYLSSSLFSSSVVSLLLVLLIqvgyFIFEVAVMLIQAYIFTLLIKLYSDEH 229
ATP6 MTH00035
ATP synthase F0 subunit 6; Validated
 3-223 1.51e-35

ATP synthase F0 subunit 6; Validated


Pssm-ID: 177110  Cd Length: 229  Bit Score: 125.47  E-value: 1.51e-35
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 357017941   3 SNLFSSFDPSTsIFSFSINWMSTLIGVLLISCLY---WLsPSRTNFIWNNSNLTLnaeFKILL--GKNSNLGMTIMFISL 77
Cdd:MTH00035   5 NSIFGQFSPDT-ILFIPLTLLSSVIALSWLFFINptnWL-PSRSQSIWLTFRQEI---LKLIFqnTNPNTAPWAGLLTTV 79

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 357017941  78 FCMIMLNNLLGLFPYVFTSSSHMVFTLSIALPLWISFMMYGWMNIFPHMFAHLVPNSTPNVLMPFMVLIETISNIIRPLT 157
Cdd:MTH00035  80 FILILSINVLGLFPYAFTSTSHISLTYSLGIPLWMSVNILGFYLAFNSRLSHLVPQGTPSFLIPLMVWIETLSLFAQPIA 159

                        170       180       190       200       210       220
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 357017941 158 LAVRLTANMIAGHLLLTLIGNTGPTM--NFNMMIIMLIMQMALLVLESAVAIIQAYVFSVLSTLYSSE 223
Cdd:MTH00035 160 LGLRLAANLTAGHLLIFLLSTAIWELsnSPLISIITLIIFFLLFILEIGVACIQAYVFTALVHFYLEQ 227
ATP6 MTH00179
ATP synthase F0 subunit 6; Provisional
 1-223 5.01e-35

ATP synthase F0 subunit 6; Provisional


Pssm-ID: 177230  Cd Length: 227  Bit Score: 123.90  E-value: 5.01e-35
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 357017941   1 MMSNLFSSFDpSTSIFSFSINWMSTLIGVLLIsclywlsPSRTNFIWNNSNLTL-----NAEFKILLGKNSNLG--MTIM 73
Cdd:MTH00179   1 MMLSMFDQFE-SPSLLGIPLLALALLLPWLLF-------PSLTNRWLNNRLSTLqswffGSFTFQLMQPINKKGhkWAVL 72

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 357017941  74 FISLFCMIMLNNLLGLFPYVFTSSSHMVFTLSIALPLWISFMMYGWMNIFPHMFAHLVPNSTPNVLMPFMVLIETISNII 153
Cdd:MTH00179  73 FLSLMLFLLTLNLLGLLPYTFTPTTQLSLNLGLALPLWLGTVLYGLFNQPTIALAHLLPEGTPTPLIPMLVWIETISLLI 152

                        170       180       190       200       210       220       230
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 357017941 154 RPLTLAVRLTANMIAGHLLLTLIGNTGPTMNFNMMIIMLIMQM---ALLVLESAVAIIQAYVFSVLSTLYSSE 223
Cdd:MTH00179 153 RPLALGVRLTANITAGHLLMHLISSAVFVLMNFMGMVALLTLLvlfLLTLLEVAVAMIQAYVFVLLLSLYLQE 225
ATP6 MTH00120
ATP synthase F0 subunit 6; Provisional
 1-223 1.15e-34

ATP synthase F0 subunit 6; Provisional


Pssm-ID: 177181  Cd Length: 227  Bit Score: 123.01  E-value: 1.15e-34
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 357017941   1 MMSNLFSSFDpSTSIFSFSINWMSTLIGVLLIsclywlsPSRTNFIWNNSNLTLNAEFKILLGKNSNLGMT-------IM 73
Cdd:MTH00120   1 MNLNFFDQFS-SPELLGIPLILLAMLIPALLI-------PSPKNRLLTNRLTTLQLWLIKLITKQLMLPLNkkghkwaLI 72

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 357017941  74 FISLFCMIMLNNLLGLFPYVFTSSSHMVFTLSIALPLWISFMMYGWMNIFPHMFAHLVPNSTPNVLMPFMVLIETISNII 153
Cdd:MTH00120  73 LTSLMLLLLLINLLGLLPYTFTPTTQLSMNMALAIPLWLATVLTGLRNQPTTSLAHLLPEGTPTPLIPALILIETISLLI 152

                        170       180       190       200       210       220       230
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 357017941 154 RPLTLAVRLTANMIAGHLLLTLIGNTgpTMNF-NMMIIMLIMQMALL----VLESAVAIIQAYVFSVLSTLYSSE 223
Cdd:MTH00120 153 RPLALGVRLTANLTAGHLLIQLISTA--TLNLlPTMPTLSLLTLIILllltILELAVAMIQAYVFVLLLSLYLQE 225
ATP6 MTH00101
ATP synthase F0 subunit 6; Validated
 1-220 4.15e-32

ATP synthase F0 subunit 6; Validated


Pssm-ID: 177163  Cd Length: 226  Bit Score: 116.20  E-value: 4.15e-32
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 357017941   1 MMSNLFSSFDPSTsifsfsINWMSTLIGVLLISCLYWLSPSRtnfiWNNSNLTLNAEFKILLGKNSNLGM--------TI 72
Cdd:MTH00101   1 MNENLFASFITPT------ILGLPIVTLIIMFPSLLFPTPNR----LINNRLISIQQWLIQLTSKQMMTIhntkgqtwSL 70

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 357017941  73 MFISLFCMIMLNNLLGLFPYVFTSSSHMVFTLSIALPLWISFMMYGWMNIFPHMFAHLVPNSTPNVLMPFMVLIETISNI 152
Cdd:MTH00101  71 MLMSLILFIGSTNLLGLLPHSFTPTTQLSMNLGMAIPLWAGTVITGFRNKTKASLAHFLPQGTPTPLIPMLVIIETISLF 150

                        170       180       190       200       210       220       230
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 357017941 153 IRPLTLAVRLTANMIAGHLLLTLIGNTGPTM---NFNMMIIMLIMQMALLVLESAVAIIQAYVFSVLSTLY 220
Cdd:MTH00101 151 IQPMALAVRLTANITAGHLLIHLIGGATLALmsiSTTTALITFIILILLTILEFAVALIQAYVFTLLVSLY 221
ATP6 MTH00132
ATP synthase F0 subunit 6; Provisional
 72-223 1.41e-31

ATP synthase F0 subunit 6; Provisional


Pssm-ID: 177190  Cd Length: 227  Bit Score: 114.97  E-value: 1.41e-31
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 357017941  72 IMFISLFCMIMLNNLLGLFPYVFTSSSHMVFTLSIALPLWISFMMYGWMNIFPHMFAHLVPNSTPNVLMPFMVLIETISN 151
Cdd:MTH00132  71 LLLTSLMLFLITLNMLGLLPYTFTPTTQLSLNMGLAVPLWLATVIIGMRNQPTHALGHLLPEGTPTPLIPVLIIIETISL 150

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 357017941 152 IIRPLTLAVRLTANMIAGHLLLTLIGNTG----PTMNfNMMIIMLIMQMALLVLESAVAIIQAYVFSVLSTLYSSE 223
Cdd:MTH00132 151 FIRPLALGVRLTANLTAGHLLIQLIATAAfvllPLMP-TVAILTATLLFLLTLLEVAVAMIQAYVFVLLLSLYLQE 225
ATP6 MTH00073
ATP synthase F0 subunit 6; Provisional
 73-223 7.10e-30

ATP synthase F0 subunit 6; Provisional


Pssm-ID: 177144  Cd Length: 227  Bit Score: 110.44  E-value: 7.10e-30
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 357017941  73 MFISLFCMIMLNNLLGLFPYVFTSSSHMVFTLSIALPLWISFMMYGWMNIFPHMFAHLVPNSTPNVLMPFMVLIETISNI 152
Cdd:MTH00073  72 ILTSLMVFLITMNLLGLLPYTFTPTTQLSLNLGLAVPLWLATVLIGLRNQPTASLGHLLPEGTPTLLIPILIIIETISLF 151

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 357017941 153 IRPLTLAVRLTANMIAGHLLLTLIGNTGPTMNFNMMIIMLIMQMALL---VLESAVAIIQAYVFSVLSTLYSSE 223
Cdd:MTH00073 152 IRPLALGVRLTANLTAGHLLIQLISTATLVLLPLMPTVSILTMIVLFlltLLEIAVAMIQAYVFVLLLSLYLQE 225
ATP-synt_A pfam00119
ATP synthase A chain;
73-222 4.05e-28

ATP synthase A chain;


Pssm-ID: 459679 [Multi-domain]  Cd Length: 216  Bit Score: 105.65  E-value: 4.05e-28
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 357017941   73 MFISLFCMIMLNNLLGLF---PYVFTSSSHMVFTLSIALPLWISFMMYG-WMNIFPHMFAHLVPNSTPNVLMPFMVLIET 148
Cdd:pfam00119  60 LLLTLFFFILVSNLLGLIpksPGGFTVTADINVTLALALIVFLLVHYYGiKKHGLGGYFKKLFVPPVPLPLVPLLLPIEI 139

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 357017941  149 ISNIIRPLTLAVRLTANMIAGHLLLTLIGNTGPTM---NFNMMIIMLIMQMALLVLESAVAIIQAYVFSVLSTLYSS 222
Cdd:pfam00119 140 ISEFARPVSLSLRLFGNMLAGHLLLLLLAGLIFALlsaGFLLGVIPPLLGVAWTLFELLVAFIQAYVFTMLTAVYIS 216
ATP6 MTH00175
ATP synthase F0 subunit 6; Provisional
 75-225 2.39e-25

ATP synthase F0 subunit 6; Provisional


Pssm-ID: 177228  Cd Length: 244  Bit Score: 99.31  E-value: 2.39e-25
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 357017941  75 ISLFCMIMLNNLLGLFPYVFTSSSHMVFTLSIALPLWISFMMYGWMNIFPHMFAHLVPNSTPNVLMPFMVLIETISNIIR 154
Cdd:MTH00175  87 LSLFLFIAILNILGLFPYVFTPTAHIIITFGLSLSIIIAVTLLGFLTFKWNFLSILMPGGAPLVLAPFLVLIETLSYLIR 166

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 357017941 155 PLTLAVRLTANMIAGHLLLTLIGNTGPTMNFNMMIIMLIMQMALLV----LESAVAIIQAYVFSVLSTLYSSETY 225
Cdd:MTH00175 167 AISLGVRLAANISAGHLLFAILSGFAFNMLSNGLIILSLFPMLIMIfitlLEMAVAVIQAYVFCLLTTIYLGDTI 241
ATP6 MTH00172
ATP synthase F0 subunit 6; Provisional
 75-224 2.92e-24

ATP synthase F0 subunit 6; Provisional


Pssm-ID: 214447  Cd Length: 232  Bit Score: 95.88  E-value: 2.92e-24
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 357017941  75 ISLFCMIMLNNLLGLFPYVFTSSSHMVFTLSIALPLWISFMMYGWMNIFPHMFAHLVPNSTPNVLMPFMVLIETISNIIR 154
Cdd:MTH00172  76 ISLFFFIVFLNLLGLFPYVFTPTTHIVVTLGLSFSIIIGVTLAGFWRFKWDFFSILMPSGAPLGLAPLLVLIETVSYISR 155

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 357017941 155 PLTLAVRLTANMIAGHLLLTLIGNTGPTMNFNMMIIMLIMQMALL---VLESAVAIIQAYVFSVLSTLYSSET 224
Cdd:MTH00172 156 AISLGVRLAANLSAGHLLFAILAGFGFNMLCASGFLSLFPLLIMVfitLLEIAVAVIQAYVFCLLTTIYLADT 228
AtpB COG0356
FoF1-type ATP synthase, membrane subunit a [Energy production and conversion]; FoF1-type ATP ...
 73-220 1.56e-23

FoF1-type ATP synthase, membrane subunit a [Energy production and conversion]; FoF1-type ATP synthase, membrane subunit a is part of the Pathway/BioSystem: FoF1-type ATP synthase


Pssm-ID: 440125 [Multi-domain]  Cd Length: 212  Bit Score: 93.60  E-value: 1.56e-23
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 357017941  73 MFISLFCMIMLNNLLGLFPYVFTSSSHMVFTLSIALPLWISFMMYG-WMNIFPHMFAHLVPNSTPnVLMPFMVLIETISN 151
Cdd:COG0356   60 LLLTLFLFILVSNLLGLIPGLFPPTADINVTLALALIVFVLVHYYGiKKKGLGGYLKHLFFPPFP-WLAPLMLPIEIISE 138

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 357017941 152 IIRPLTLAVRLTANMIAGHLLLTLIGNTGPTmnFNMMIIMLIMQMALLVLESAVAIIQAYVFSVLSTLY 220
Cdd:COG0356  139 LARPLSLSLRLFGNMFAGHIILLLLAGLAPF--LLLGVLSLLLPVAWTAFELLVGFLQAYIFTMLTAVY 205
PRK05815 PRK05815
F0F1 ATP synthase subunit A; Validated
 73-220 3.42e-19

F0F1 ATP synthase subunit A; Validated


Pssm-ID: 235617  Cd Length: 227  Bit Score: 82.53  E-value: 3.42e-19
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 357017941  73 MFISLFCMIMLNNLLGLFP-YVFTSSSHMVFTLSIALPLWISFMMYG-WMNIFPHMFAHLVPNstpnvLMPFMVLIETIS 150
Cdd:PRK05815  75 LAFTLFLFILLMNLLGLIPyLLFPPTADINVTLALALIVFVLVIYYGiKKKGLGGYLKEFYLQ-----PHPLLLPIEIIS 149

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 357017941 151 NIIRPLTLAVRLTANMIAGHLLLTLIGNTGPTMNFnMMIIMLIMQMALLVLESAVAIIQAYVFSVLSTLY 220
Cdd:PRK05815 150 EFSRPISLSLRLFGNMLAGELILALIALLGGAGLL-LALAPLILPVAWTIFEIFVGTLQAYIFMMLTIVY 218
ATP6 MTH00174
ATP synthase F0 subunit 6; Provisional
 75-224 8.43e-18

ATP synthase F0 subunit 6; Provisional


Pssm-ID: 133799  Cd Length: 252  Bit Score: 79.21  E-value: 8.43e-18
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 357017941  75 ISLFCMIMLNNLLGLFPYVFTSSSHMVFTLSIALPLWISFMMYGWMNIFPHMFAHLVPNSTPNVLMPFMVLIETISNIIR 154
Cdd:MTH00174  95 LSLFILILFGNGLGLFPYVFTPTVHMVITLGLSFAIIVGTTLAGLITFRFNFFSILMPQGAPLALAPLLTIIETLSYISR 174

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 357017941 155 PLTLAVRLTANMIAGHLLLTLIGNTGPTMNFNMMIIMLIMQMALL----VLESAVAIIQAYVFSVLSTLYSSET 224
Cdd:MTH00174 175 AISLGVRLAANISSGHLLFSIIASFAWKMINTGILIGSFVPFAILifvtILEMAVAIIQAYVFTLLTIVYLRDT 248
PRK13419 PRK13419
F0F1 ATP synthase subunit A; Provisional
 75-220 2.12e-10

F0F1 ATP synthase subunit A; Provisional


Pssm-ID: 237381  Cd Length: 342  Bit Score: 59.37  E-value: 2.12e-10
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 357017941  75 ISLFCMIMLNNLLGLFPYVFTSSSHMVFTLSIALplwISFMMYGWMNIFPH----MFAHLVpNSTPNVLMPFMVLIETIS 150
Cdd:PRK13419 175 LTVFFFILVCNLLGLVPYGATATGNINVTLTLAV---FTFFITQYAAIKAHgikgYLAHLT-GGTHWSLWIIMIPIEFIG 250

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 357017941 151 NIIRPLTLAVRLTANMIAGHL-LLTLIGntgptMNFNMMIIMLIMQMA------LLVLESAVAIIQAYVFSVLSTLY 220
Cdd:PRK13419 251 LFTKPFALTVRLFANMTAGHIvILSLIF-----ISFILKSYIVAVAVSvpfaifIYLLELFVAFLQAYIFTMLSALF 322
PRK13417 PRK13417
F0F1 ATP synthase subunit A; Provisional
 95-220 1.11e-07

F0F1 ATP synthase subunit A; Provisional


Pssm-ID: 237380  Cd Length: 352  Bit Score: 51.43  E-value: 1.11e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 357017941  95 TSSSHMVFTLSIALPLWISFMMYGWMNIFPHMFAHLVPNSTPNVLMPFMVLIETI-SNIIRPLTLAVRLTANMIAGH-LL 172
Cdd:PRK13417 217 TVTGDISVTMTLALLTMFLIYGAGFSYQGPKFIWHSVPNGVPLLLYPIMWPLEFIvSPMAKTFALTVRLLANMTAGHvII 296

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|....*...
gi 357017941 173 LTLIGNTGPTMNFNMMIIMLIMQMALLVLESAVAIIQAYVFSVLSTLY 220
Cdd:PRK13417 297 LALMGFIFQFQSWGIVPVSVIGSGLIYVLEIFVAFLQAYIFVLLTSLF 344
ATP6 MTH00050
ATP synthase F0 subunit 6; Validated
 44-178 1.61e-07

ATP synthase F0 subunit 6; Validated


Pssm-ID: 177125  Cd Length: 170  Bit Score: 49.50  E-value: 1.61e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 357017941  44 NFIWNNSNLTLNAEFKILLGKNSNLGMTIMFISLFCMIMLNnllglFPYVFTSSSHMVFTLSIALPLWISFMMYGWMNIF 123
Cdd:MTH00050   1 MFVNDFSSLFSLIYKLILGGSVSYYYSVVLFIVLFLFLLYR-----LPYIYSPFLFVVFLFVVVFPLFISLFLSRVFDSL 75

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|....*
gi 357017941 124 PHMFAHLVPNSTPNVLMPFMVLIETISNIIRPLTLAVRLTANMIAGHLLLTLIGN 178
Cdd:MTH00050  76 NEFFSSFVPVGTPLYICPFVCIAETISYIIRPVVLILRPFINISLGCFGGVALGN 130
ATP6 MTH00087
ATP synthase F0 subunit 6; Provisional
 72-223 6.31e-07

ATP synthase F0 subunit 6; Provisional


Pssm-ID: 177152  Cd Length: 195  Bit Score: 48.05  E-value: 6.31e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 357017941  72 IMFISLFCMIMLNNLLGLFPYVFTSSSHMVFTLSIALPLWISFMMYGWMNIFphMFAHLVPNSTPNVLMPF-MVLIETIS 150
Cdd:MTH00087  53 VISFFTFIVLLLFCFGGLFPYSFSPCGMVEFTFLYALVAWLSTFLSFLSKSE--KFSVYLSKGSDSFLKTFsMLFVEIVS 130

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 357017941 151 NIIRPLTLAVRLTANMIAGHLLLTLIGNTGptmnfnmmIIMLIMQMALLVLESAVAIIQAYVFSVLSTLYSSE 223
Cdd:MTH00087 131 ELSRPLALTLRLTVNLMVGHLISSLLNFLG--------EKYVWLSILAIMMECFVAFIQSYIFSRLIYLYLNE 195
PRK13420 PRK13420
F0F1 ATP synthase subunit A; Provisional
 76-220 1.51e-05

F0F1 ATP synthase subunit A; Provisional


Pssm-ID: 237382 [Multi-domain]  Cd Length: 226  Bit Score: 44.35  E-value: 1.51e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 357017941  76 SLFCMIMLNNLLGLFPYVFTSSSHMVFTLSIALPLWISFMMYG-----WMNIFPHmfaHLVPNStpnVLMPFMVlietIS 150
Cdd:PRK13420  80 TLWIFILVANLIGLIPGFHSPTADLSVTAALALLVFFSVHWFGiraegLREYLKH---YLSPSP---FLLPFHL----IS 149

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 357017941 151 NIIRPLTLAVRLTANM----IAGHLLLTLIGNTGPtmnfnmmiimlimqMALLVLESAVAIIQAYVFSVLSTLY 220
Cdd:PRK13420 150 EITRTLALAVRLFGNImsleLAALLVLLVAGFLVP--------------VPILMLHIIEALVQAYIFGMLALIY 209
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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