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Conserved domains on  [gi|356540781|ref|XP_003538863|]
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heavy metal-associated isoprenylated plant protein 35 [Glycine max]

Protein Classification

heavy-metal-associated domain-containing protein( domain architecture ID 10449815)

heavy-metal-associated domain-containing protein may function as a heavy metal transporter and/or detoxification protein; such as heavy metal-associated isoprenylated plant proteins

Gene Ontology:  GO:0046872
PubMed:  12443926|8905098

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
HMA pfam00403
Heavy-metal-associated domain;
5-60 2.88e-06

Heavy-metal-associated domain;


:

Pssm-ID: 459804 [Multi-domain]  Cd Length: 58  Bit Score: 41.84  E-value: 2.88e-06
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*.
gi 356540781    5 TVLKVDISCLKCKRKLLKIVSSIQGVDKIEADEGKGTLTVTGDADPYEiIVRIRKA 60
Cdd:pfam00403   1 TFRVSGMHCGGCAAKVEKALSELPGVLSVSVDLATKTVTVTGDAESTK-LEKLVEA 55
 
Name Accession Description Interval E-value
HMA pfam00403
Heavy-metal-associated domain;
5-60 2.88e-06

Heavy-metal-associated domain;


Pssm-ID: 459804 [Multi-domain]  Cd Length: 58  Bit Score: 41.84  E-value: 2.88e-06
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*.
gi 356540781    5 TVLKVDISCLKCKRKLLKIVSSIQGVDKIEADEGKGTLTVTGDADPYEiIVRIRKA 60
Cdd:pfam00403   1 TFRVSGMHCGGCAAKVEKALSELPGVLSVSVDLATKTVTVTGDAESTK-LEKLVEA 55
CopZ COG2608
Copper chaperone CopZ [Inorganic ion transport and metabolism];
3-68 8.24e-06

Copper chaperone CopZ [Inorganic ion transport and metabolism];


Pssm-ID: 442020 [Multi-domain]  Cd Length: 71  Bit Score: 41.04  E-value: 8.24e-06
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 356540781   3 KKTVLKVD-ISCLKCKRKLLKIVSSIQGVDKIEADEGKGTLTVTGD---ADPYEIIVRIRKAGKHAEVVS 68
Cdd:COG2608    2 KTVTLKVEgMTCGHCVARVEKALKALDGVASVEVDLATGTATVTYDpekVSLEDIKAAIEEAGYEVEKAE 71
HMA cd00371
Heavy-metal-associated domain (HMA) is a conserved domain of approximately 30 amino acid ...
 6-65 1.17e-03

Heavy-metal-associated domain (HMA) is a conserved domain of approximately 30 amino acid residues found in a number of proteins that transport or detoxify heavy metals, for example, the CPx-type heavy metal ATPases and copper chaperones. HMA domain contains two cysteine residues that are important in binding and transfer of metal ions, such as copper, cadmium, cobalt and zinc. In the case of copper, stoichiometry of binding is one Cu+ ion per binding domain. Repeats of the HMA domain in copper chaperone has been associated with Menkes/Wilson disease due to binding of multiple copper ions.


Pssm-ID: 238219 [Multi-domain]  Cd Length: 63  Bit Score: 35.27  E-value: 1.17e-03
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 356540781   6 VLKVD-ISCLKCKRKLLKIVSSIQGVDKIEADEGKGTLTVTGDA--DPYEIIVRIRKAGKHAE 65
Cdd:cd00371    1 ELSVEgMTCAGCVSKIEKALEKLPGVESVEVDLETGKATVEYDPevSPEELLEAIEDAGYKAR 63
copA PRK10671
copper-exporting P-type ATPase CopA;
11-67 4.40e-03

copper-exporting P-type ATPase CopA;


Pssm-ID: 182635 [Multi-domain]  Cd Length: 834  Bit Score: 35.87  E-value: 4.40e-03
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|....*..
gi 356540781  11 ISCLKCKRKLLKIVSSIQGVDKIEADEGKGTLTVTGDADPYEIIVRIRKAGKHAEVV 67
Cdd:PRK10671 108 MSCASCVSRVQNALQSVPGVTQARVNLAERTALVMGSASPQDLVQAVEKAGYGAEAI 164
 
Name Accession Description Interval E-value
HMA pfam00403
Heavy-metal-associated domain;
5-60 2.88e-06

Heavy-metal-associated domain;


Pssm-ID: 459804 [Multi-domain]  Cd Length: 58  Bit Score: 41.84  E-value: 2.88e-06
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*.
gi 356540781    5 TVLKVDISCLKCKRKLLKIVSSIQGVDKIEADEGKGTLTVTGDADPYEiIVRIRKA 60
Cdd:pfam00403   1 TFRVSGMHCGGCAAKVEKALSELPGVLSVSVDLATKTVTVTGDAESTK-LEKLVEA 55
CopZ COG2608
Copper chaperone CopZ [Inorganic ion transport and metabolism];
3-68 8.24e-06

Copper chaperone CopZ [Inorganic ion transport and metabolism];


Pssm-ID: 442020 [Multi-domain]  Cd Length: 71  Bit Score: 41.04  E-value: 8.24e-06
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 356540781   3 KKTVLKVD-ISCLKCKRKLLKIVSSIQGVDKIEADEGKGTLTVTGD---ADPYEIIVRIRKAGKHAEVVS 68
Cdd:COG2608    2 KTVTLKVEgMTCGHCVARVEKALKALDGVASVEVDLATGTATVTYDpekVSLEDIKAAIEEAGYEVEKAE 71
HMA cd00371
Heavy-metal-associated domain (HMA) is a conserved domain of approximately 30 amino acid ...
 6-65 1.17e-03

Heavy-metal-associated domain (HMA) is a conserved domain of approximately 30 amino acid residues found in a number of proteins that transport or detoxify heavy metals, for example, the CPx-type heavy metal ATPases and copper chaperones. HMA domain contains two cysteine residues that are important in binding and transfer of metal ions, such as copper, cadmium, cobalt and zinc. In the case of copper, stoichiometry of binding is one Cu+ ion per binding domain. Repeats of the HMA domain in copper chaperone has been associated with Menkes/Wilson disease due to binding of multiple copper ions.


Pssm-ID: 238219 [Multi-domain]  Cd Length: 63  Bit Score: 35.27  E-value: 1.17e-03
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 356540781   6 VLKVD-ISCLKCKRKLLKIVSSIQGVDKIEADEGKGTLTVTGDA--DPYEIIVRIRKAGKHAE 65
Cdd:cd00371    1 ELSVEgMTCAGCVSKIEKALEKLPGVESVEVDLETGKATVEYDPevSPEELLEAIEDAGYKAR 63
copA PRK10671
copper-exporting P-type ATPase CopA;
11-67 4.40e-03

copper-exporting P-type ATPase CopA;


Pssm-ID: 182635 [Multi-domain]  Cd Length: 834  Bit Score: 35.87  E-value: 4.40e-03
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|....*..
gi 356540781  11 ISCLKCKRKLLKIVSSIQGVDKIEADEGKGTLTVTGDADPYEIIVRIRKAGKHAEVV 67
Cdd:PRK10671 108 MSCASCVSRVQNALQSVPGVTQARVNLAERTALVMGSASPQDLVQAVEKAGYGAEAI 164
PLN02957 PLN02957
copper, zinc superoxide dismutase
 9-74 4.83e-03

copper, zinc superoxide dismutase


Pssm-ID: 215516 [Multi-domain]  Cd Length: 238  Bit Score: 35.50  E-value: 4.83e-03
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 356540781   9 VDISCLKCKRKLLKIVSSIQGVDKIEADEGKGTLTVTGDADPYEIIVRIRKAGKHAEVVSVGPPQA 74
Cdd:PLN02957  12 VDMKCEGCVAAVKNKLETLEGVKAVEVDLSNQVVRVLGSSPVKAMTAALEQTGRKARLIGQGDPED 77
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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