NCBI Home Page NCBI Site Search page NCBI Guide that lists and describes the NCBI resources
Conserved domains on  [gi|355348570|ref|YP_004928121|]
View 

p23 [Hibiscus green spot virus 2]

Protein Classification

SP24 domain-containing protein( domain architecture ID 11243456)

SP24 domain-containing protein

Graphical summary

 Zoom to residue level

show extra options »

Show site features     Horizontal zoom: ×

List of domain hits

 Name Accession Description Interval E-value
SP24 pfam16504
Putative virion membrane protein of plant and insect virus; SP24, or structural protein of ...
 21-157 9.01e-24

Putative virion membrane protein of plant and insect virus; SP24, or structural protein of 24kD, is a family of putative virion membrane proteins of plant and insect viruses. These viruses are ssRNA positive-strand viruses, with no DNA stage. The family corresponds to the central region of the ORF3 of insect chroparaviruses and negeviruses and plant cileviruses, higreviruses and blunerviruses. It contains four transmembrane regions. Chronic bee paralysis virus (CBPV) is one of the more common member virions. SP24 is probably one of the major structural components of the virions.


:

Pssm-ID: 465148  Cd Length: 147  Bit Score: 91.92  E-value: 9.01e-24
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 355348570   21 LIYDVFNICLKFIMKPHILIMYACLLVVVYNKGEAGD--VIEKALKAYPR---------NPILKWAKTDYVRFIGILVGL 89
Cdd:pfam16504   1 FFSDVLDSFLNLISNPLVLILFILALLLVLAEINSTTsgPLEKLAKALSKlfksiaaalKSLLKWVITNKDKVAGLLIFL 80

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 355348570   90 PVIIDAPRSFQLLITGAVFVSTYILPPQTLSTYLLGFVSLHVYSKAKSVQLRIILLAsFATYLVLSGI 157
Cdd:pfam16504  81 PPVLDKPSKRRLLIFLAFLLFVYLIPELSVLEYFILSLALYLYVKLRNPEHRLLILA-LVVVVYILGF 147
 
Name Accession Description Interval E-value
SP24 pfam16504
Putative virion membrane protein of plant and insect virus; SP24, or structural protein of ...
 21-157 9.01e-24

Putative virion membrane protein of plant and insect virus; SP24, or structural protein of 24kD, is a family of putative virion membrane proteins of plant and insect viruses. These viruses are ssRNA positive-strand viruses, with no DNA stage. The family corresponds to the central region of the ORF3 of insect chroparaviruses and negeviruses and plant cileviruses, higreviruses and blunerviruses. It contains four transmembrane regions. Chronic bee paralysis virus (CBPV) is one of the more common member virions. SP24 is probably one of the major structural components of the virions.


Pssm-ID: 465148  Cd Length: 147  Bit Score: 91.92  E-value: 9.01e-24
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 355348570   21 LIYDVFNICLKFIMKPHILIMYACLLVVVYNKGEAGD--VIEKALKAYPR---------NPILKWAKTDYVRFIGILVGL 89
Cdd:pfam16504   1 FFSDVLDSFLNLISNPLVLILFILALLLVLAEINSTTsgPLEKLAKALSKlfksiaaalKSLLKWVITNKDKVAGLLIFL 80

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 355348570   90 PVIIDAPRSFQLLITGAVFVSTYILPPQTLSTYLLGFVSLHVYSKAKSVQLRIILLAsFATYLVLSGI 157
Cdd:pfam16504  81 PPVLDKPSKRRLLIFLAFLLFVYLIPELSVLEYFILSLALYLYVKLRNPEHRLLILA-LVVVVYILGF 147
 
Name Accession Description Interval E-value
SP24 pfam16504
Putative virion membrane protein of plant and insect virus; SP24, or structural protein of ...
 21-157 9.01e-24

Putative virion membrane protein of plant and insect virus; SP24, or structural protein of 24kD, is a family of putative virion membrane proteins of plant and insect viruses. These viruses are ssRNA positive-strand viruses, with no DNA stage. The family corresponds to the central region of the ORF3 of insect chroparaviruses and negeviruses and plant cileviruses, higreviruses and blunerviruses. It contains four transmembrane regions. Chronic bee paralysis virus (CBPV) is one of the more common member virions. SP24 is probably one of the major structural components of the virions.


Pssm-ID: 465148  Cd Length: 147  Bit Score: 91.92  E-value: 9.01e-24
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 355348570   21 LIYDVFNICLKFIMKPHILIMYACLLVVVYNKGEAGD--VIEKALKAYPR---------NPILKWAKTDYVRFIGILVGL 89
Cdd:pfam16504   1 FFSDVLDSFLNLISNPLVLILFILALLLVLAEINSTTsgPLEKLAKALSKlfksiaaalKSLLKWVITNKDKVAGLLIFL 80

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 355348570   90 PVIIDAPRSFQLLITGAVFVSTYILPPQTLSTYLLGFVSLHVYSKAKSVQLRIILLAsFATYLVLSGI 157
Cdd:pfam16504  81 PPVLDKPSKRRLLIFLAFLLFVYLIPELSVLEYFILSLALYLYVKLRNPEHRLLILA-LVVVVYILGF 147
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
Help | Disclaimer | Write to the Help Desk
NCBI | NLM | NIH