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Conserved domains on  [gi|355001132|gb|AER51325|]
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cytochrome b, partial (mitochondrion) [Notiospathius sp. 45 AZR-2011]

Protein Classification

cytochrome b( domain architecture ID 999997)

cytochrome b is a component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex) that is part of the mitochondrial respiratory chain; contributes to the generation of a proton gradient across the mitochondrial membrane that is then used for ATP synthesis

CATH:  1.20.810.10
Gene Symbol:  CYTB
Gene Ontology:  GO:0009055|GO:0046872|GO:0022904|GO:0005743|GO:0020037
PubMed:  2509716|8329437
SCOP:  4002208

Graphical summary

 Zoom to residue level

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List of domain hits

 Name Accession Description Interval E-value
CYTB super family cl33360
cytochrome b; Provisional
 1-114 1.62e-59

cytochrome b; Provisional


The actual alignment was detected with superfamily member MTH00156:

Pssm-ID: 214440 [Multi-domain]  Cd Length: 356  Bit Score: 186.14  E-value: 1.62e-59
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 355001132   1 IVEWLWGGYSVDNPTLNRFYTLHFLLPFILVVMVFMHLMFLHETGSNNPLGLNSNFYKIFFHNYFTLKDMLGGAWFLFF* 80
Cdd:MTH00156 150 LVQWIWGGFSVDNATLTRFFTFHFLLPFIILAMVMIHLLFLHQTGSNNPLGLNSNIDKIPFHPYFTFKDLVGFIIMLMLL 229

                         90       100       110
                 ....*....|....*....|....*....|....
gi 355001132  81 MFFIFEYPFILGDPENFIMANCMITPVHIQPEWY 114
Cdd:MTH00156 230 ILLTLINPYLLGDPENFIPANPLVTPVHIQPEWY 263
 
Name Accession Description Interval E-value
CYTB MTH00156
cytochrome b; Provisional
 1-114 1.62e-59

cytochrome b; Provisional


Pssm-ID: 214440 [Multi-domain]  Cd Length: 356  Bit Score: 186.14  E-value: 1.62e-59
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 355001132   1 IVEWLWGGYSVDNPTLNRFYTLHFLLPFILVVMVFMHLMFLHETGSNNPLGLNSNFYKIFFHNYFTLKDMLGGAWFLFF* 80
Cdd:MTH00156 150 LVQWIWGGFSVDNATLTRFFTFHFLLPFIILAMVMIHLLFLHQTGSNNPLGLNSNIDKIPFHPYFTFKDLVGFIIMLMLL 229

                         90       100       110
                 ....*....|....*....|....*....|....
gi 355001132  81 MFFIFEYPFILGDPENFIMANCMITPVHIQPEWY 114
Cdd:MTH00156 230 ILLTLINPYLLGDPENFIPANPLVTPVHIQPEWY 263
QcrB/PetB COG1290
Cytochrome b subunit of the bc complex [Energy production and conversion];
1-114 2.32e-26

Cytochrome b subunit of the bc complex [Energy production and conversion];


Pssm-ID: 440901 [Multi-domain]  Cd Length: 393  Bit Score: 100.25  E-value: 2.32e-26
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 355001132   1 IVEWLWGGYSVDNPTLNRFYTLH-FLLPFILVVMVFMHLMFLHETGSNNPLGLNSNFYK----IFFHNYFTLKDMLGGAW 75
Cdd:COG1290  171 LVTWLFGGEFPGDATLNRFFALHvLLLPALLLALVVLHLWLLHRHGHNNPPGPERKKTEkvdgVPFHPYYTVKDGFGFFV 250

                         90       100       110
                 ....*....|....*....|....*....|....*....
gi 355001132  76 FLFF*MFFIFEYPFilGDPENFIMANCMITPVHIQPEWY 114
Cdd:COG1290  251 FLGVFALLAFFFPI--NPPPNYGPANPLATPAHIQPDWY 287
Cytochrome_b_N cd00284
Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit ...
 1-47 1.41e-17

Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit mitochondrial respiratory enzyme. Cytochrome b spans the mitochondrial membrane with 8 transmembrane helices (A-H) in eukaryotes. In plants and cyanobacteria, cytochrome b6 is analogous to eukaryote cytochrome b, containing two chains: helices A-D are encoded by the petB gene and helices E-H are encoded by the petD gene in these organisms. Cytochrome b/b6 contains two bound hemes and two ubiquinol/ubiquinone binding sites. The C-terminal portion of cytochrome b is described in a separate CD.


Pssm-ID: 238176  Cd Length: 200  Bit Score: 73.94  E-value: 1.41e-17
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|....*..
gi 355001132   1 IVEWLWGGYSVDNPTLNRFYTLHFLLPFILVVMVFMHLMFLHETGSN 47
Cdd:cd00284  154 LVEWLWGGFSVDNATLTRFFALHFLLPFIIAVIVILHLLFLHEQGSS 200
Cytochrom_B_N_2 pfam13631
Cytochrome b(N-terminal)/b6/petB;
1-94 1.24e-14

Cytochrome b(N-terminal)/b6/petB;


Pssm-ID: 433364  Cd Length: 169  Bit Score: 65.73  E-value: 1.24e-14
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 355001132    1 IVEWLWGGYSVDNPTLNRFYTLHF-LLPFILVVMVFMHLMFLHETGSNNPLGLNSNFYKIFFHNYFTLKDMLGGAWFLFF 79
Cdd:pfam13631  75 LVWLLFGGPFPGTATIPRFYALHIlLLPGLILALIVAHLLLVEKHGQFPPPGTEKNVVGVPFWPVFAVKMLLFFLITVAL 154

                          90
                  ....*....|....*
gi 355001132   80 *MFFIFEYPFILGDP 94
Cdd:pfam13631 155 LIGLAQINPIWLGGP 169
 
Name Accession Description Interval E-value
CYTB MTH00156
cytochrome b; Provisional
 1-114 1.62e-59

cytochrome b; Provisional


Pssm-ID: 214440 [Multi-domain]  Cd Length: 356  Bit Score: 186.14  E-value: 1.62e-59
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 355001132   1 IVEWLWGGYSVDNPTLNRFYTLHFLLPFILVVMVFMHLMFLHETGSNNPLGLNSNFYKIFFHNYFTLKDMLGGAWFLFF* 80
Cdd:MTH00156 150 LVQWIWGGFSVDNATLTRFFTFHFLLPFIILAMVMIHLLFLHQTGSNNPLGLNSNIDKIPFHPYFTFKDLVGFIIMLMLL 229

                         90       100       110
                 ....*....|....*....|....*....|....
gi 355001132  81 MFFIFEYPFILGDPENFIMANCMITPVHIQPEWY 114
Cdd:MTH00156 230 ILLTLINPYLLGDPENFIPANPLVTPVHIQPEWY 263
CYTB MTH00145
cytochrome b; Provisional
 1-114 4.81e-52

cytochrome b; Provisional


Pssm-ID: 177203 [Multi-domain]  Cd Length: 379  Bit Score: 167.39  E-value: 4.81e-52
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 355001132   1 IVEWLWGGYSVDNPTLNRFYTLHFLLPFILVVMVFMHLMFLHETGSNNPLGLNSNFYKIFFHNYFTLKDMLGGAWFLFF* 80
Cdd:MTH00145 161 LVEWVWGGFSVGNATLKRFFSLHFLLPFVILGLSVLHLLFLHETGSNNPLGLDSDGDKVPFHPYYTIKDLVGFVVLLFLL 240

                         90       100       110
                 ....*....|....*....|....*....|....
gi 355001132  81 MFFIFEYPFILGDPENFIMANCMITPVHIQPEWY 114
Cdd:MTH00145 241 VFLVLFFPNLLGDPENFIPANPMVTPVHIQPEWY 274
CYTB MTH00119
cytochrome b; Provisional
 1-114 2.31e-51

cytochrome b; Provisional


Pssm-ID: 214425 [Multi-domain]  Cd Length: 380  Bit Score: 165.84  E-value: 2.31e-51
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 355001132   1 IVEWLWGGYSVDNPTLNRFYTLHFLLPFILVVMVFMHLMFLHETGSNNPLGLNSNFYKIFFHNYFTLKDMLGGAWFLFF* 80
Cdd:MTH00119 161 LVEWIWGGFSVDNPTLTRFFALHFLLPFLIAGLTLIHLLFLHETGSNNPLGLNSNTDKIPFHPYFSYKDLLGLTLMLTLL 240

                         90       100       110
                 ....*....|....*....|....*....|....
gi 355001132  81 MFFIFEYPFILGDPENFIMANCMITPVHIQPEWY 114
Cdd:MTH00119 241 LTLALFSPNLLGDPENFTPANPLVTPPHIKPEWY 274
CYTB MTH00191
cytochrome b; Provisional
 1-114 1.44e-50

cytochrome b; Provisional


Pssm-ID: 177239 [Multi-domain]  Cd Length: 365  Bit Score: 163.55  E-value: 1.44e-50
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 355001132   1 IVEWLWGGYSVDNPTLNRFYTLHFLLPFILVVMVFMHLMFLHETGSNNPLGLNSNFYKIFFHNYFTLKDMLGGAWFLFF* 80
Cdd:MTH00191 157 LVQWLWGGFSVDNATLTRFFTFHFLLPFLIAALSLIHLLFLHETGSNNPLGLNSDSDKIPFHPYFSYKDILGFFILLFLL 236

                         90       100       110
                 ....*....|....*....|....*....|....
gi 355001132  81 MFFIFEYPFILGDPENFIMANCMITPVHIQPEWY 114
Cdd:MTH00191 237 LFLVLFSPNLLGDPENFIPANPLVTPVHIKPEWY 270
CYTB MTH00016
cytochrome b; Validated
 1-114 2.36e-48

cytochrome b; Validated


Pssm-ID: 177102 [Multi-domain]  Cd Length: 378  Bit Score: 157.92  E-value: 2.36e-48
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 355001132   1 IVEWLWGGYSVDNPTLNRFYTLHFLLPFILVVMVFMHLMFLHETGSNNPLGLNSNFYKIFFHNYFTLKDMLGGAWFLFF* 80
Cdd:MTH00016 161 LVQWLWGGFSVDNATLTRFFALHFLLPFVIAALSMIHLLFLHQTGSNNPLGVNSNSDKVPFHPYYTSKDIVGFIVMLFLL 240

                         90       100       110
                 ....*....|....*....|....*....|....
gi 355001132  81 MFFIFEYPFILGDPENFIMANCMITPVHIQPEWY 114
Cdd:MTH00016 241 LSVVLLWPNILGDPENFIPANPLVTPTHIKPEWY 274
CYTB MTH00131
cytochrome b; Provisional
 1-114 3.40e-46

cytochrome b; Provisional


Pssm-ID: 177189 [Multi-domain]  Cd Length: 380  Bit Score: 152.50  E-value: 3.40e-46
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 355001132   1 IVEWLWGGYSVDNPTLNRFYTLHFLLPFILVVMVFMHLMFLHETGSNNPLGLNSNFYKIFFHNYFTLKDMLGGAWFLFF* 80
Cdd:MTH00131 160 LVQWIWGGFSVDNATLTRFFAFHFLFPFVIAAATILHLLFLHETGSNNPLGLNSDADKISFHPYFSYKDLLGFAILLLAL 239

                         90       100       110
                 ....*....|....*....|....*....|....
gi 355001132  81 MFFIFEYPFILGDPENFIMANCMITPVHIQPEWY 114
Cdd:MTH00131 240 TSLALFSPNLLGDPDNFTPANPLVTPPHIKPEWY 273
CYTB MTH00034
cytochrome b; Validated
 1-114 1.42e-45

cytochrome b; Validated


Pssm-ID: 177109 [Multi-domain]  Cd Length: 379  Bit Score: 151.01  E-value: 1.42e-45
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 355001132   1 IVEWLWGGYSVDNPTLNRFYTLHFLLPFILVVMVFMHLMFLHETGSNNPLGLNSNFYKIFFHNYFTLKDMLGGAWFLFF* 80
Cdd:MTH00034 160 IVQWIWGGFSVDNATLTRFFAFHFLFPFIIAALSIIHLLFLHQTGSNNPTGLNSNYDKVPFHTYFTTKDLVGFLILFAAL 239

                         90       100       110
                 ....*....|....*....|....*....|....
gi 355001132  81 MFFIFEYPFILGDPENFIMANCMITPVHIQPEWY 114
Cdd:MTH00034 240 SSLALLFPTALNDPENFIPANPLVTPPHIQPEWY 273
CYTB MTH00100
cytochrome b; Provisional
 1-114 1.13e-44

cytochrome b; Provisional


Pssm-ID: 177162 [Multi-domain]  Cd Length: 379  Bit Score: 148.63  E-value: 1.13e-44
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 355001132   1 IVEWLWGGYSVDNPTLNRFYTLHFLLPFILVVMVFMHLMFLHETGSNNPLGLNSNFYKIFFHNYFTLKDMLGGAWFLFF* 80
Cdd:MTH00100 160 LVEWIWGGFSVDKATLTRFFAFHFILPFIITALAMVHLLFLHETGSNNPSGIPSDSDKIPFHPYYTIKDILGLLLLILTL 239

                         90       100       110
                 ....*....|....*....|....*....|....
gi 355001132  81 MFFIFEYPFILGDPENFIMANCMITPVHIQPEWY 114
Cdd:MTH00100 240 MLLVLFSPDLLGDPDNYTPANPLNTPPHIKPEWY 273
CYTB MTH00074
cytochrome b; Provisional
 1-114 6.43e-44

cytochrome b; Provisional


Pssm-ID: 177145 [Multi-domain]  Cd Length: 380  Bit Score: 146.75  E-value: 6.43e-44
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 355001132   1 IVEWLWGGYSVDNPTLNRFYTLHFLLPFILVVMVFMHLMFLHETGSNNPLGLNSNFYKIFFHNYFTLKDMLGGAWFLFF* 80
Cdd:MTH00074 161 LVQWIWGGFSVDKATLTRFFAFHFLLPFLIAGASIIHLLFLHETGSNNPTGLNSNPDKVPFHPYFSYKDLLGFLIMLTAL 240

                         90       100       110
                 ....*....|....*....|....*....|....
gi 355001132  81 MFFIFEYPFILGDPENFIMANCMITPVHIQPEWY 114
Cdd:MTH00074 241 ALLSLFSPNLLGDPDNFTPANPLVTPPHIQPEWY 274
CYTB MTH00022
cytochrome b; Validated
 1-114 5.58e-41

cytochrome b; Validated


Pssm-ID: 164595 [Multi-domain]  Cd Length: 379  Bit Score: 139.07  E-value: 5.58e-41
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 355001132   1 IVEWLWGGYSVDNPTLNRFYTLHFLLPFILVVMVFMHLMFLHETGSNNPLGLNSNFYKIFFHNYFTLKDMLGGAWFLFF* 80
Cdd:MTH00022 159 IVQWVWGGFSVSNATLNRFFSLHFLFPFILAFLVIVHLIYLHVDGSNNPIGLNSSVDKVSFHVYYTSKDWYGIVVLFFLL 238

                         90       100       110
                 ....*....|....*....|....*....|....
gi 355001132  81 MFFIFEYPFILGDPENFIMANCMITPVHIQPEWY 114
Cdd:MTH00022 239 SFIVYFAPNLLGDPENFIQANSLVTPVHIQPEWY 272
CYTB MTH00053
cytochrome b; Provisional
 1-114 2.47e-40

cytochrome b; Provisional


Pssm-ID: 164624 [Multi-domain]  Cd Length: 381  Bit Score: 137.14  E-value: 2.47e-40
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 355001132   1 IVEWLWGGYSVDNPTLNRFYTLHFLLPFILVVMVFMHLMFLHETGSNNPLGLNSNFYKIFFHNYFTLKDMLGGAWFLFF* 80
Cdd:MTH00053 161 IVRWVWGGFSVSNATLNRFYSLHYLLPFILAGLALVHLIALHEDGSNNPIGVRSDIDKIPFHYYYVLKDLYGAVILLIIL 240

                         90       100       110
                 ....*....|....*....|....*....|....
gi 355001132  81 MFFIFEYPFILGDPENFIMANCMITPVHIQPEWY 114
Cdd:MTH00053 241 SIIVFLFPYSLGDAENFKQANPLVTPVHIKPEWY 274
CYTB MTH00224
cytochrome b; Provisional
 1-114 2.12e-39

cytochrome b; Provisional


Pssm-ID: 164767 [Multi-domain]  Cd Length: 379  Bit Score: 134.66  E-value: 2.12e-39
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 355001132   1 IVEWLWGGYSVDNPTLNRFYTLHFLLPFILVVMVFMHLMFLHETGSNNPLGLNSNFYKIFFHNYFTLKDMLGGAWFLFF* 80
Cdd:MTH00224 161 LVEWIWGGFAVDNATLNRFFSFHFLLPFAIMGATILHIMFLHQTGSNNPIGINADSARIPFHPYYSIKDALGYLIAILLL 240

                         90       100       110
                 ....*....|....*....|....*....|....
gi 355001132  81 MFFIFEYPFILGDPENFIMANCMITPVHIQPEWY 114
Cdd:MTH00224 241 SLMVLFEPNLFTDPENFLMANPLVTPIHIKPEWY 274
CYTB MTH00033
cytochrome b; Provisional
 1-114 1.17e-31

cytochrome b; Provisional


Pssm-ID: 133672 [Multi-domain]  Cd Length: 383  Bit Score: 114.65  E-value: 1.17e-31
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 355001132   1 IVEWLWGGYSVDNPTLNRFYTLHFLLPFILVVMVFMHLMFLHETGSNNPLGLNSNFYKIFFHNYFTLKDMLGGAWFLFF* 80
Cdd:MTH00033 157 IVEWIWGGFSVSNCTLNRFFSLHYLLPFVLVGLVLAHLLTLHEKGSNEPLGLVGLSDRTAFHVYFTIKDILGFLILFGVF 236

                         90       100       110
                 ....*....|....*....|....*....|....*.
gi 355001132  81 MFFIFE--YPFILGDPENFIMANCMITPVHIQPEWY 114
Cdd:MTH00033 237 VIIGIEprIETLLQDPENFIQANPLVTPVHIQPEWY 272
CYTB MTH00086
cytochrome b; Provisional
 1-114 1.85e-31

cytochrome b; Provisional


Pssm-ID: 177151 [Multi-domain]  Cd Length: 355  Bit Score: 113.50  E-value: 1.85e-31
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 355001132   1 IVEWLWGGYSVDNPTLNRFYTLHFLLPFILVVMVFMHLMFLHETGSNNPLGLNSNFYKIFFHNYFTLKDMLgGAWFLFF* 80
Cdd:MTH00086 149 IVMWIWGGFGVSSATLKFFFVLHFLLPWGLLVLVLFHLIFLHSTGSTSSLYCHGDYDKICFGPEYWNKDAY-NIIFWLVF 227

                         90       100       110
                 ....*....|....*....|....*....|....
gi 355001132  81 MFFIFEYPFILGDPENFIMANCMITPVHIQPEWY 114
Cdd:MTH00086 228 IIFSLFYPFNLGDPEMFIEADPMMSPVHIVPEWY 261
QcrB/PetB COG1290
Cytochrome b subunit of the bc complex [Energy production and conversion];
1-114 2.32e-26

Cytochrome b subunit of the bc complex [Energy production and conversion];


Pssm-ID: 440901 [Multi-domain]  Cd Length: 393  Bit Score: 100.25  E-value: 2.32e-26
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 355001132   1 IVEWLWGGYSVDNPTLNRFYTLH-FLLPFILVVMVFMHLMFLHETGSNNPLGLNSNFYK----IFFHNYFTLKDMLGGAW 75
Cdd:COG1290  171 LVTWLFGGEFPGDATLNRFFALHvLLLPALLLALVVLHLWLLHRHGHNNPPGPERKKTEkvdgVPFHPYYTVKDGFGFFV 250

                         90       100       110
                 ....*....|....*....|....*....|....*....
gi 355001132  76 FLFF*MFFIFEYPFilGDPENFIMANCMITPVHIQPEWY 114
Cdd:COG1290  251 FLGVFALLAFFFPI--NPPPNYGPANPLATPAHIQPDWY 287
CYTB MTH00046
cytochrome b; Validated
 7-114 2.84e-20

cytochrome b; Validated


Pssm-ID: 177121 [Multi-domain]  Cd Length: 355  Bit Score: 83.49  E-value: 2.84e-20
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 355001132   7 GGYSVDNPTLNRFYTLHFLLPFILVVMVFMHLMFLHETGSNNPLGLNSNFYK-IFFHNYFTLKDMLGGAWFLFF*MFFIF 85
Cdd:MTH00046 157 GGFSVTGVTLVRVFSVHICLGFVILGLMVVHLFYLHKSGSSNPLFSSNGYSDvVYFHSYFTVKDLFLFMVVCSLLVFWLF 236

                         90       100
                 ....*....|....*....|....*....
gi 355001132  86 EYPFILGDPENFIMANCMITPVHIQPEWY 114
Cdd:MTH00046 237 VSPDLVLDIEAYLEADPLVTPVSIKPEWY 265
Cytochrome_b_N cd00284
Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit ...
 1-47 1.41e-17

Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit mitochondrial respiratory enzyme. Cytochrome b spans the mitochondrial membrane with 8 transmembrane helices (A-H) in eukaryotes. In plants and cyanobacteria, cytochrome b6 is analogous to eukaryote cytochrome b, containing two chains: helices A-D are encoded by the petB gene and helices E-H are encoded by the petD gene in these organisms. Cytochrome b/b6 contains two bound hemes and two ubiquinol/ubiquinone binding sites. The C-terminal portion of cytochrome b is described in a separate CD.


Pssm-ID: 238176  Cd Length: 200  Bit Score: 73.94  E-value: 1.41e-17
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|....*..
gi 355001132   1 IVEWLWGGYSVDNPTLNRFYTLHFLLPFILVVMVFMHLMFLHETGSN 47
Cdd:cd00284  154 LVEWLWGGFSVDNATLTRFFALHFLLPFIIAVIVILHLLFLHEQGSS 200
Cytochrom_B_N_2 pfam13631
Cytochrome b(N-terminal)/b6/petB;
1-94 1.24e-14

Cytochrome b(N-terminal)/b6/petB;


Pssm-ID: 433364  Cd Length: 169  Bit Score: 65.73  E-value: 1.24e-14
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 355001132    1 IVEWLWGGYSVDNPTLNRFYTLHF-LLPFILVVMVFMHLMFLHETGSNNPLGLNSNFYKIFFHNYFTLKDMLGGAWFLFF 79
Cdd:pfam13631  75 LVWLLFGGPFPGTATIPRFYALHIlLLPGLILALIVAHLLLVEKHGQFPPPGTEKNVVGVPFWPVFAVKMLLFFLITVAL 154

                          90
                  ....*....|....*
gi 355001132   80 *MFFIFEYPFILGDP 94
Cdd:pfam13631 155 LIGLAQINPIWLGGP 169
Cytochrome_B pfam00033
Cytochrome b/b6/petB;
1-45 1.57e-13

Cytochrome b/b6/petB;


Pssm-ID: 306530  Cd Length: 189  Bit Score: 63.17  E-value: 1.57e-13
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*
gi 355001132    1 IVEWLWGGYSVDNPTLNRFYTLHFLLPFILVVMVFMHLMFLHETG 45
Cdd:pfam00033 145 LVEWIWGSFSVDQATLTRFFSLHFLLPFILAILMLLHLLFLHETG 189
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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