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Conserved domains on  [gi|355001000|gb|AER51259|]
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cytochrome b, partial (mitochondrion) [Notiospathius sp. 46 AZR-2011]

Protein Classification

cytochrome b( domain architecture ID 999997)

cytochrome b is a component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex) that is part of the mitochondrial respiratory chain; contributes to the generation of a proton gradient across the mitochondrial membrane that is then used for ATP synthesis

CATH:  1.20.810.10
Gene Symbol:  CYTB
Gene Ontology:  GO:0009055|GO:0046872|GO:0022904|GO:0005743|GO:0020037
PubMed:  2509716|8329437
SCOP:  4002208

Graphical summary

 Zoom to residue level

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List of domain hits

 Name Accession Description Interval E-value
CYTB super family cl33360
cytochrome b; Provisional
 1-111 3.50e-53

cytochrome b; Provisional


The actual alignment was detected with superfamily member MTH00156:

Pssm-ID: 214440 [Multi-domain]  Cd Length: 356  Bit Score: 169.96  E-value: 3.50e-53
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 355001000   1 VVEWLWGGFSVENPTLNRFYSLHFLLPFILVVMVFMHLMFLHETGSNNPLGLNSNFYKIFFHNYFTLKDILGGLWFFFFF 80
Cdd:MTH00156 150 LVQWIWGGFSVDNATLTRFFTFHFLLPFIILAMVMIHLLFLHQTGSNNPLGLNSNIDKIPFHPYFTFKDLVGFIIMLMLL 229

                         90       100       110
                 ....*....|....*....|....*....|.
gi 355001000  81 MSFV*EYPFILGDPENFIMADCMITPAHFHP 111
Cdd:MTH00156 230 ILLTLINPYLLGDPENFIPANPLVTPVHIQP 260
 
Name Accession Description Interval E-value
CYTB MTH00156
cytochrome b; Provisional
 1-111 3.50e-53

cytochrome b; Provisional


Pssm-ID: 214440 [Multi-domain]  Cd Length: 356  Bit Score: 169.96  E-value: 3.50e-53
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 355001000   1 VVEWLWGGFSVENPTLNRFYSLHFLLPFILVVMVFMHLMFLHETGSNNPLGLNSNFYKIFFHNYFTLKDILGGLWFFFFF 80
Cdd:MTH00156 150 LVQWIWGGFSVDNATLTRFFTFHFLLPFIILAMVMIHLLFLHQTGSNNPLGLNSNIDKIPFHPYFTFKDLVGFIIMLMLL 229

                         90       100       110
                 ....*....|....*....|....*....|.
gi 355001000  81 MSFV*EYPFILGDPENFIMADCMITPAHFHP 111
Cdd:MTH00156 230 ILLTLINPYLLGDPENFIPANPLVTPVHIQP 260
QcrB/PetB COG1290
Cytochrome b subunit of the bc complex [Energy production and conversion];
1-111 9.32e-22

Cytochrome b subunit of the bc complex [Energy production and conversion];


Pssm-ID: 440901 [Multi-domain]  Cd Length: 393  Bit Score: 87.92  E-value: 9.32e-22
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 355001000   1 VVEWLWGGFSVENPTLNRFYSLH-FLLPFILVVMVFMHLMFLHETGSNNPLGLNSNFYK----IFFHNYFTLKDILGGLW 75
Cdd:COG1290  171 LVTWLFGGEFPGDATLNRFFALHvLLLPALLLALVVLHLWLLHRHGHNNPPGPERKKTEkvdgVPFHPYYTVKDGFGFFV 250

                         90       100       110
                 ....*....|....*....|....*....|....*.
gi 355001000  76 FFFFFMSFV*EYPFilGDPENFIMADCMITPAHFHP 111
Cdd:COG1290  251 FLGVFALLAFFFPI--NPPPNYGPANPLATPAHIQP 284
Cytochrome_b_N cd00284
Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit ...
 1-47 1.65e-17

Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit mitochondrial respiratory enzyme. Cytochrome b spans the mitochondrial membrane with 8 transmembrane helices (A-H) in eukaryotes. In plants and cyanobacteria, cytochrome b6 is analogous to eukaryote cytochrome b, containing two chains: helices A-D are encoded by the petB gene and helices E-H are encoded by the petD gene in these organisms. Cytochrome b/b6 contains two bound hemes and two ubiquinol/ubiquinone binding sites. The C-terminal portion of cytochrome b is described in a separate CD.


Pssm-ID: 238176  Cd Length: 200  Bit Score: 73.94  E-value: 1.65e-17
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|....*..
gi 355001000   1 VVEWLWGGFSVENPTLNRFYSLHFLLPFILVVMVFMHLMFLHETGSN 47
Cdd:cd00284  154 LVEWLWGGFSVDNATLTRFFALHFLLPFIIAVIVILHLLFLHEQGSS 200
Cytochrom_B_N_2 pfam13631
Cytochrome b(N-terminal)/b6/petB;
2-94 5.29e-15

Cytochrome b(N-terminal)/b6/petB;


Pssm-ID: 433364  Cd Length: 169  Bit Score: 66.50  E-value: 5.29e-15
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 355001000    2 VEWLWGGFSVENPTLNRFYSLHF-LLPFILVVMVFMHLMFLHETGSNNPLGLNSNFYKIFFHNYFTLKDILGGLWFFFFF 80
Cdd:pfam13631  76 VWLLFGGPFPGTATIPRFYALHIlLLPGLILALIVAHLLLVEKHGQFPPPGTEKNVVGVPFWPVFAVKMLLFFLITVALL 155

                          90
                  ....*....|....
gi 355001000   81 MSFV*EYPFILGDP 94
Cdd:pfam13631 156 IGLAQINPIWLGGP 169
 
Name Accession Description Interval E-value
CYTB MTH00156
cytochrome b; Provisional
 1-111 3.50e-53

cytochrome b; Provisional


Pssm-ID: 214440 [Multi-domain]  Cd Length: 356  Bit Score: 169.96  E-value: 3.50e-53
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 355001000   1 VVEWLWGGFSVENPTLNRFYSLHFLLPFILVVMVFMHLMFLHETGSNNPLGLNSNFYKIFFHNYFTLKDILGGLWFFFFF 80
Cdd:MTH00156 150 LVQWIWGGFSVDNATLTRFFTFHFLLPFIILAMVMIHLLFLHQTGSNNPLGLNSNIDKIPFHPYFTFKDLVGFIIMLMLL 229

                         90       100       110
                 ....*....|....*....|....*....|.
gi 355001000  81 MSFV*EYPFILGDPENFIMADCMITPAHFHP 111
Cdd:MTH00156 230 ILLTLINPYLLGDPENFIPANPLVTPVHIQP 260
CYTB MTH00145
cytochrome b; Provisional
 1-111 2.68e-46

cytochrome b; Provisional


Pssm-ID: 177203 [Multi-domain]  Cd Length: 379  Bit Score: 152.75  E-value: 2.68e-46
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 355001000   1 VVEWLWGGFSVENPTLNRFYSLHFLLPFILVVMVFMHLMFLHETGSNNPLGLNSNFYKIFFHNYFTLKDILGGLWFFFFF 80
Cdd:MTH00145 161 LVEWVWGGFSVGNATLKRFFSLHFLLPFVILGLSVLHLLFLHETGSNNPLGLDSDGDKVPFHPYYTIKDLVGFVVLLFLL 240

                         90       100       110
                 ....*....|....*....|....*....|.
gi 355001000  81 MSFV*EYPFILGDPENFIMADCMITPAHFHP 111
Cdd:MTH00145 241 VFLVLFFPNLLGDPENFIPANPMVTPVHIQP 271
CYTB MTH00119
cytochrome b; Provisional
 1-111 4.25e-46

cytochrome b; Provisional


Pssm-ID: 214425 [Multi-domain]  Cd Length: 380  Bit Score: 152.36  E-value: 4.25e-46
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 355001000   1 VVEWLWGGFSVENPTLNRFYSLHFLLPFILVVMVFMHLMFLHETGSNNPLGLNSNFYKIFFHNYFTLKDILGGLWFFFFF 80
Cdd:MTH00119 161 LVEWIWGGFSVDNPTLTRFFALHFLLPFLIAGLTLIHLLFLHETGSNNPLGLNSNTDKIPFHPYFSYKDLLGLTLMLTLL 240

                         90       100       110
                 ....*....|....*....|....*....|.
gi 355001000  81 MSFV*EYPFILGDPENFIMADCMITPAHFHP 111
Cdd:MTH00119 241 LTLALFSPNLLGDPENFTPANPLVTPPHIKP 271
CYTB MTH00191
cytochrome b; Provisional
 1-111 1.36e-44

cytochrome b; Provisional


Pssm-ID: 177239 [Multi-domain]  Cd Length: 365  Bit Score: 148.14  E-value: 1.36e-44
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 355001000   1 VVEWLWGGFSVENPTLNRFYSLHFLLPFILVVMVFMHLMFLHETGSNNPLGLNSNFYKIFFHNYFTLKDILGGLWFFFFF 80
Cdd:MTH00191 157 LVQWLWGGFSVDNATLTRFFTFHFLLPFLIAALSLIHLLFLHETGSNNPLGLNSDSDKIPFHPYFSYKDILGFFILLFLL 236

                         90       100       110
                 ....*....|....*....|....*....|.
gi 355001000  81 MSFV*EYPFILGDPENFIMADCMITPAHFHP 111
Cdd:MTH00191 237 LFLVLFSPNLLGDPENFIPANPLVTPVHIKP 267
CYTB MTH00016
cytochrome b; Validated
 1-111 1.51e-44

cytochrome b; Validated


Pssm-ID: 177102 [Multi-domain]  Cd Length: 378  Bit Score: 148.29  E-value: 1.51e-44
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 355001000   1 VVEWLWGGFSVENPTLNRFYSLHFLLPFILVVMVFMHLMFLHETGSNNPLGLNSNFYKIFFHNYFTLKDILGGLWFFFFF 80
Cdd:MTH00016 161 LVQWLWGGFSVDNATLTRFFALHFLLPFVIAALSMIHLLFLHQTGSNNPLGVNSNSDKVPFHPYYTSKDIVGFIVMLFLL 240

                         90       100       110
                 ....*....|....*....|....*....|.
gi 355001000  81 MSFV*EYPFILGDPENFIMADCMITPAHFHP 111
Cdd:MTH00016 241 LSVVLLWPNILGDPENFIPANPLVTPTHIKP 271
CYTB MTH00100
cytochrome b; Provisional
 2-111 5.86e-42

cytochrome b; Provisional


Pssm-ID: 177162 [Multi-domain]  Cd Length: 379  Bit Score: 141.31  E-value: 5.86e-42
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 355001000   2 VEWLWGGFSVENPTLNRFYSLHFLLPFILVVMVFMHLMFLHETGSNNPLGLNSNFYKIFFHNYFTLKDILGGLWFFFFFM 81
Cdd:MTH00100 161 VEWIWGGFSVDKATLTRFFAFHFILPFIITALAMVHLLFLHETGSNNPSGIPSDSDKIPFHPYYTIKDILGLLLLILTLM 240

                         90       100       110
                 ....*....|....*....|....*....|
gi 355001000  82 SFV*EYPFILGDPENFIMADCMITPAHFHP 111
Cdd:MTH00100 241 LLVLFSPDLLGDPDNYTPANPLNTPPHIKP 270
CYTB MTH00131
cytochrome b; Provisional
 2-111 2.12e-41

cytochrome b; Provisional


Pssm-ID: 177189 [Multi-domain]  Cd Length: 380  Bit Score: 140.17  E-value: 2.12e-41
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 355001000   2 VEWLWGGFSVENPTLNRFYSLHFLLPFILVVMVFMHLMFLHETGSNNPLGLNSNFYKIFFHNYFTLKDILGGLWFFFFFM 81
Cdd:MTH00131 161 VQWIWGGFSVDNATLTRFFAFHFLFPFVIAAATILHLLFLHETGSNNPLGLNSDADKISFHPYFSYKDLLGFAILLLALT 240

                         90       100       110
                 ....*....|....*....|....*....|
gi 355001000  82 SFV*EYPFILGDPENFIMADCMITPAHFHP 111
Cdd:MTH00131 241 SLALFSPNLLGDPDNFTPANPLVTPPHIKP 270
CYTB MTH00034
cytochrome b; Validated
 1-111 9.66e-40

cytochrome b; Validated


Pssm-ID: 177109 [Multi-domain]  Cd Length: 379  Bit Score: 135.60  E-value: 9.66e-40
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 355001000   1 VVEWLWGGFSVENPTLNRFYSLHFLLPFILVVMVFMHLMFLHETGSNNPLGLNSNFYKIFFHNYFTLKDILGGLWFFFFF 80
Cdd:MTH00034 160 IVQWIWGGFSVDNATLTRFFAFHFLFPFIIAALSIIHLLFLHQTGSNNPTGLNSNYDKVPFHTYFTTKDLVGFLILFAAL 239

                         90       100       110
                 ....*....|....*....|....*....|.
gi 355001000  81 MSFV*EYPFILGDPENFIMADCMITPAHFHP 111
Cdd:MTH00034 240 SSLALLFPTALNDPENFIPANPLVTPPHIQP 270
CYTB MTH00074
cytochrome b; Provisional
 2-111 1.16e-38

cytochrome b; Provisional


Pssm-ID: 177145 [Multi-domain]  Cd Length: 380  Bit Score: 132.88  E-value: 1.16e-38
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 355001000   2 VEWLWGGFSVENPTLNRFYSLHFLLPFILVVMVFMHLMFLHETGSNNPLGLNSNFYKIFFHNYFTLKDILGGLWFFFFFM 81
Cdd:MTH00074 162 VQWIWGGFSVDKATLTRFFAFHFLLPFLIAGASIIHLLFLHETGSNNPTGLNSNPDKVPFHPYFSYKDLLGFLIMLTALA 241

                         90       100       110
                 ....*....|....*....|....*....|
gi 355001000  82 SFV*EYPFILGDPENFIMADCMITPAHFHP 111
Cdd:MTH00074 242 LLSLFSPNLLGDPDNFTPANPLVTPPHIQP 271
CYTB MTH00053
cytochrome b; Provisional
 1-112 4.54e-37

cytochrome b; Provisional


Pssm-ID: 164624 [Multi-domain]  Cd Length: 381  Bit Score: 128.67  E-value: 4.54e-37
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 355001000   1 VVEWLWGGFSVENPTLNRFYSLHFLLPFILVVMVFMHLMFLHETGSNNPLGLNSNFYKIFFHNYFTLKDILGGLWFFFFF 80
Cdd:MTH00053 161 IVRWVWGGFSVSNATLNRFYSLHYLLPFILAGLALVHLIALHEDGSNNPIGVRSDIDKIPFHYYYVLKDLYGAVILLIIL 240

                         90       100       110
                 ....*....|....*....|....*....|..
gi 355001000  81 MSFV*EYPFILGDPENFIMADCMITPAHFHPK 112
Cdd:MTH00053 241 SIIVFLFPYSLGDAENFKQANPLVTPVHIKPE 272
CYTB MTH00022
cytochrome b; Validated
 1-112 1.33e-36

cytochrome b; Validated


Pssm-ID: 164595 [Multi-domain]  Cd Length: 379  Bit Score: 127.51  E-value: 1.33e-36
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 355001000   1 VVEWLWGGFSVENPTLNRFYSLHFLLPFILVVMVFMHLMFLHETGSNNPLGLNSNFYKIFFHNYFTLKDILGGLWFFFFF 80
Cdd:MTH00022 159 IVQWVWGGFSVSNATLNRFFSLHFLFPFILAFLVIVHLIYLHVDGSNNPIGLNSSVDKVSFHVYYTSKDWYGIVVLFFLL 238

                         90       100       110
                 ....*....|....*....|....*....|..
gi 355001000  81 MSFV*EYPFILGDPENFIMADCMITPAHFHPK 112
Cdd:MTH00022 239 SFIVYFAPNLLGDPENFIQANSLVTPVHIQPE 270
CYTB MTH00224
cytochrome b; Provisional
 1-112 1.52e-35

cytochrome b; Provisional


Pssm-ID: 164767 [Multi-domain]  Cd Length: 379  Bit Score: 124.65  E-value: 1.52e-35
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 355001000   1 VVEWLWGGFSVENPTLNRFYSLHFLLPFILVVMVFMHLMFLHETGSNNPLGLNSNFYKIFFHNYFTLKDILGGLWFFFFF 80
Cdd:MTH00224 161 LVEWIWGGFAVDNATLNRFFSFHFLLPFAIMGATILHIMFLHQTGSNNPIGINADSARIPFHPYYSIKDALGYLIAILLL 240

                         90       100       110
                 ....*....|....*....|....*....|..
gi 355001000  81 MSFV*EYPFILGDPENFIMADCMITPAHFHPK 112
Cdd:MTH00224 241 SLMVLFEPNLFTDPENFLMANPLVTPIHIKPE 272
CYTB MTH00033
cytochrome b; Provisional
 1-112 2.91e-28

cytochrome b; Provisional


Pssm-ID: 133672 [Multi-domain]  Cd Length: 383  Bit Score: 105.41  E-value: 2.91e-28
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 355001000   1 VVEWLWGGFSVENPTLNRFYSLHFLLPFILVVMVFMHLMFLHETGSNNPLGLNSNFYKIFFHNYFTLKDILGG--LWFFF 78
Cdd:MTH00033 157 IVEWIWGGFSVSNCTLNRFFSLHYLLPFVLVGLVLAHLLTLHEKGSNEPLGLVGLSDRTAFHVYFTIKDILGFliLFGVF 236

                         90       100       110
                 ....*....|....*....|....*....|....
gi 355001000  79 FFMSFV*EYPFILGDPENFIMADCMITPAHFHPK 112
Cdd:MTH00033 237 VIIGIEPRIETLLQDPENFIQANPLVTPVHIQPE 270
CYTB MTH00086
cytochrome b; Provisional
 1-111 1.12e-27

cytochrome b; Provisional


Pssm-ID: 177151 [Multi-domain]  Cd Length: 355  Bit Score: 103.48  E-value: 1.12e-27
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 355001000   1 VVEWLWGGFSVENPTLNRFYSLHFLLPFILVVMVFMHLMFLHETGSNNPLGLNSNFYKIFFHNYFTLKDILgGLWFFFFF 80
Cdd:MTH00086 149 IVMWIWGGFGVSSATLKFFFVLHFLLPWGLLVLVLFHLIFLHSTGSTSSLYCHGDYDKICFGPEYWNKDAY-NIIFWLVF 227

                         90       100       110
                 ....*....|....*....|....*....|.
gi 355001000  81 MSFV*EYPFILGDPENFIMADCMITPAHFHP 111
Cdd:MTH00086 228 IIFSLFYPFNLGDPEMFIEADPMMSPVHIVP 258
QcrB/PetB COG1290
Cytochrome b subunit of the bc complex [Energy production and conversion];
1-111 9.32e-22

Cytochrome b subunit of the bc complex [Energy production and conversion];


Pssm-ID: 440901 [Multi-domain]  Cd Length: 393  Bit Score: 87.92  E-value: 9.32e-22
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 355001000   1 VVEWLWGGFSVENPTLNRFYSLH-FLLPFILVVMVFMHLMFLHETGSNNPLGLNSNFYK----IFFHNYFTLKDILGGLW 75
Cdd:COG1290  171 LVTWLFGGEFPGDATLNRFFALHvLLLPALLLALVVLHLWLLHRHGHNNPPGPERKKTEkvdgVPFHPYYTVKDGFGFFV 250

                         90       100       110
                 ....*....|....*....|....*....|....*.
gi 355001000  76 FFFFFMSFV*EYPFilGDPENFIMADCMITPAHFHP 111
Cdd:COG1290  251 FLGVFALLAFFFPI--NPPPNYGPANPLATPAHIQP 284
CYTB MTH00046
cytochrome b; Validated
 7-111 5.72e-18

cytochrome b; Validated


Pssm-ID: 177121 [Multi-domain]  Cd Length: 355  Bit Score: 77.33  E-value: 5.72e-18
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 355001000   7 GGFSVENPTLNRFYSLHFLLPFILVVMVFMHLMFLHETGSNNPLGLNSNFYK-IFFHNYFTLKDILGGLWFFFFFMSFV* 85
Cdd:MTH00046 157 GGFSVTGVTLVRVFSVHICLGFVILGLMVVHLFYLHKSGSSNPLFSSNGYSDvVYFHSYFTVKDLFLFMVVCSLLVFWLF 236

                         90       100
                 ....*....|....*....|....*.
gi 355001000  86 EYPFILGDPENFIMADCMITPAHFHP 111
Cdd:MTH00046 237 VSPDLVLDIEAYLEADPLVTPVSIKP 262
Cytochrome_b_N cd00284
Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit ...
 1-47 1.65e-17

Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit mitochondrial respiratory enzyme. Cytochrome b spans the mitochondrial membrane with 8 transmembrane helices (A-H) in eukaryotes. In plants and cyanobacteria, cytochrome b6 is analogous to eukaryote cytochrome b, containing two chains: helices A-D are encoded by the petB gene and helices E-H are encoded by the petD gene in these organisms. Cytochrome b/b6 contains two bound hemes and two ubiquinol/ubiquinone binding sites. The C-terminal portion of cytochrome b is described in a separate CD.


Pssm-ID: 238176  Cd Length: 200  Bit Score: 73.94  E-value: 1.65e-17
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|....*..
gi 355001000   1 VVEWLWGGFSVENPTLNRFYSLHFLLPFILVVMVFMHLMFLHETGSN 47
Cdd:cd00284  154 LVEWLWGGFSVDNATLTRFFALHFLLPFIIAVIVILHLLFLHEQGSS 200
Cytochrom_B_N_2 pfam13631
Cytochrome b(N-terminal)/b6/petB;
2-94 5.29e-15

Cytochrome b(N-terminal)/b6/petB;


Pssm-ID: 433364  Cd Length: 169  Bit Score: 66.50  E-value: 5.29e-15
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 355001000    2 VEWLWGGFSVENPTLNRFYSLHF-LLPFILVVMVFMHLMFLHETGSNNPLGLNSNFYKIFFHNYFTLKDILGGLWFFFFF 80
Cdd:pfam13631  76 VWLLFGGPFPGTATIPRFYALHIlLLPGLILALIVAHLLLVEKHGQFPPPGTEKNVVGVPFWPVFAVKMLLFFLITVALL 155

                          90
                  ....*....|....
gi 355001000   81 MSFV*EYPFILGDP 94
Cdd:pfam13631 156 IGLAQINPIWLGGP 169
Cytochrome_B pfam00033
Cytochrome b/b6/petB;
1-45 1.80e-13

Cytochrome b/b6/petB;


Pssm-ID: 306530  Cd Length: 189  Bit Score: 63.17  E-value: 1.80e-13
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*
gi 355001000    1 VVEWLWGGFSVENPTLNRFYSLHFLLPFILVVMVFMHLMFLHETG 45
Cdd:pfam00033 145 LVEWIWGSFSVDQATLTRFFSLHFLLPFILAILMLLHLLFLHETG 189
petB CHL00070
cytochrome b6
 1-50 1.44e-07

cytochrome b6


Pssm-ID: 177009  Cd Length: 215  Bit Score: 47.41  E-value: 1.44e-07
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|.
gi 355001000   1 VVEWLWGGFSVENPTLNRFYSLH-FLLPFILVVMVFMHLMFLHETGSNNPL 50
Cdd:CHL00070 165 LVELLRGSVSVGQSTLTRFYSLHtFVLPLLTAVFMLMHFLMIRKQGISGPL 215
PRK03735 PRK03735
cytochrome b6; Provisional
 1-50 8.02e-05

cytochrome b6; Provisional


Pssm-ID: 179639  Cd Length: 223  Bit Score: 40.08  E-value: 8.02e-05
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|.
gi 355001000   1 VVEWLWGGFSVENPTLNRFYSLH-FLLPFILVVMVFMHLMFLHETGSNNPL 50
Cdd:PRK03735 173 IKTLLRGGEIVGAQTLTRFFAIHvFFLPWALAVLMLAHFLMIRKQGISGPL 223
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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