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Conserved domains on  [gi|354992362|gb|AER46017|]
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NADH dehydrogenase subunit 2 (mitochondrion) [Micropsitta pusio]

Protein Classification

NADH dehydrogenase subunit 2( domain architecture ID 11475904)

NADH dehydrogenase subunit 2 is the core subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I), which functions in the transfer of electrons from NADH to the respiratory chain

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
ND2 MTH00112
NADH dehydrogenase subunit 2; Provisional
 1-346 3.30e-138

NADH dehydrogenase subunit 2; Provisional


:

Pssm-ID: 214423 [Multi-domain]  Cd Length: 346  Bit Score: 396.12  E-value: 3.30e-138
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 354992362   1 MNPLTKFISTMSLLLGTTITITSNHWMMAWTGLEINTLAIIPHISKSHHPRAIEATTKYFLVQATASALMLFSSMINAQL 80
Cdd:MTH00112   1 MNPHAKLIITTSLILGTIITISSNHWLMAWTGLEINTLAIIPLISKPHHPRATEAATKYFLTQAAASALILFSSTTNAWN 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 354992362  81 TGQWDITQLTYPPSCLLLTTAIAIKLGLAPFHFWFPDVLQGSPLTTALLLSTLMKLPPTTILLLTSHSLNPTLLTTMSIT 160
Cdd:MTH00112  81 TGQWDITQLTNPTSCTLLTLALAMKLGLAPFHFWLPEVLQGSTTTTALILSTWQKLAPLTLLLMTSNSLNPTLLLTLAIL 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 354992362 161 SIALGGWMGLNQTQTRKILAFSSISHLGWMTIITTYNPKLTLLTFYTYTLMTTAIFLTMNTTNTLKLPTLMTSWTKMPTL 240
Cdd:MTH00112 161 STLIGGWGGLNQTQLRKIMAFSSIAHLGWMIAIITYSPKLTLLTFYIYILMTTPMFLTLNTTSTKTLKDMMTSWTKSPTL 240

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 354992362 241 NTTLMLTLLSLAGLPPLTGFLPKWLIIQELTKQEMTTTATIISLLSLLGLFFYLRLGYCSTITLPPNPSNKMKQWSTKKP 320
Cdd:MTH00112 241 NTTLMLTLLSLAGLPPLTGFMPKWLILQELTKQNMTPTATIMAMLSLLSLFFYLRLTYISTITLPPNTTNMMMKWRTKPK 320

                        330       340
                 ....*....|....*....|....*.
gi 354992362 321 TNNLTPTLTSLSTLLLPLSPTILATI 346
Cdd:MTH00112 321 KNTLTATLTTLSTLLLPLSPMILTII 346
 
Name Accession Description Interval E-value
ND2 MTH00112
NADH dehydrogenase subunit 2; Provisional
 1-346 3.30e-138

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214423 [Multi-domain]  Cd Length: 346  Bit Score: 396.12  E-value: 3.30e-138
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 354992362   1 MNPLTKFISTMSLLLGTTITITSNHWMMAWTGLEINTLAIIPHISKSHHPRAIEATTKYFLVQATASALMLFSSMINAQL 80
Cdd:MTH00112   1 MNPHAKLIITTSLILGTIITISSNHWLMAWTGLEINTLAIIPLISKPHHPRATEAATKYFLTQAAASALILFSSTTNAWN 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 354992362  81 TGQWDITQLTYPPSCLLLTTAIAIKLGLAPFHFWFPDVLQGSPLTTALLLSTLMKLPPTTILLLTSHSLNPTLLTTMSIT 160
Cdd:MTH00112  81 TGQWDITQLTNPTSCTLLTLALAMKLGLAPFHFWLPEVLQGSTTTTALILSTWQKLAPLTLLLMTSNSLNPTLLLTLAIL 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 354992362 161 SIALGGWMGLNQTQTRKILAFSSISHLGWMTIITTYNPKLTLLTFYTYTLMTTAIFLTMNTTNTLKLPTLMTSWTKMPTL 240
Cdd:MTH00112 161 STLIGGWGGLNQTQLRKIMAFSSIAHLGWMIAIITYSPKLTLLTFYIYILMTTPMFLTLNTTSTKTLKDMMTSWTKSPTL 240

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 354992362 241 NTTLMLTLLSLAGLPPLTGFLPKWLIIQELTKQEMTTTATIISLLSLLGLFFYLRLGYCSTITLPPNPSNKMKQWSTKKP 320
Cdd:MTH00112 241 NTTLMLTLLSLAGLPPLTGFMPKWLILQELTKQNMTPTATIMAMLSLLSLFFYLRLTYISTITLPPNTTNMMMKWRTKPK 320

                        330       340
                 ....*....|....*....|....*.
gi 354992362 321 TNNLTPTLTSLSTLLLPLSPTILATI 346
Cdd:MTH00112 321 KNTLTATLTTLSTLLLPLSPMILTII 346
Proton_antipo_M pfam00361
Proton-conducting membrane transporter; This is a family of membrane transporters that ...
 23-268 6.21e-25

Proton-conducting membrane transporter; This is a family of membrane transporters that inlcudes some 7 of potentially 14-16 TM regions. In many instances the family forms part of complex I that catalyzes the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane, and in this context is a combination predominantly of subunits 2, 4, 5, 14, L, M and N. In many bacterial species these proteins are probable stand-alone transporters not coupled with oxidoreduction. The family in total represents homologs across the phyla.


Pssm-ID: 425636 [Multi-domain]  Cd Length: 291  Bit Score: 102.01  E-value: 6.21e-25
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 354992362   23 SNHWMMAWTGLEINTLAIIPHI-SKSHHPRAIEATTKYFLVQATASALMLFSSMINAQLTGQWDITQL-TYPPSC----- 95
Cdd:pfam00361   1 ANDLLLMYLGWEAVLLPSYLLIgYWGKSPRSSEAGMKYFLLTLLGSSILLFGISLMYNYTGTLSFDELsKALTGGlnssg 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 354992362   96 -----LLLTTAIAIKLGLAPFHFWFPDVLQGSPLTTALLLSTLM-KLPPTTILLLTS--HSLNPT---LLTTMSITSIAL 164
Cdd:pfam00361  81 llllfLLILVGFLFKSAQVPFHTWLPDAYEGAPTPVSALLAATLvKAGGYGLIRRSLlyLPSSPFiqqILLILAIISMLL 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 354992362  165 GGWMGLNQTQTRKILAFSSISHLGWMTII----TTYNPKLTLLTFYTYTLMTTAIFL--------TMNTTNTLKLPTLmt 232
Cdd:pfam00361 161 GSLAALVQTDIKRLLAYSSISHMGYMLIAlgagTIYGIQAAIFHLLTHGLFSAGLFLcagsviyrRVHTRNIRDYGGL-- 238

                         250       260       270
                  ....*....|....*....|....*....|....*.
gi 354992362  233 sWTKMPTLNTTLMLTLLSLAGLPPLTGFLPKWLIIQ 268
Cdd:pfam00361 239 -AKTMPILALVFLVAMLSLAGLPPTAGFLGKFLILA 273
NuoN COG1007
NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH: ...
 14-281 5.18e-23

NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 2 (chain N) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440631 [Multi-domain]  Cd Length: 473  Bit Score: 99.42  E-value: 5.18e-23
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 354992362  14 LLGTTITITSNHWMMAWTGLEINTLA--IIPHISKsHHPRAIEATTKYFLVQATASALMLF-SSMINAqLTGQWDITQL- 89
Cdd:COG1007  112 TLGMMLMASANDLLTLFLGLELLSLSlyVLVAFRR-DDRRSSEAALKYFLLGALSSGFLLYgISLLYG-ATGSLNLAGIa 189

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 354992362  90 -------TYPP----SCLLLTTAIAIKLGLAPFHFWFPDVLQGSPlttalllstlmklPPTT-----------------I 141
Cdd:COG1007  190 aalaaggANSPllllGLVLVLAGLAFKLSAVPFHMWTPDVYEGAP-------------TPVTaflatapkiaafaallrL 256

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 354992362 142 LLLTSHSLNP---TLLTTMSITSIALGGWMGLNQTQTRKILAFSSISHLGWMTI-ITTYNPK-LTLLTFY--TYTLMTTA 214
Cdd:COG1007  257 LVEAFPGLAAdwqLLLAVLAVLSMTVGNLAALAQTNVKRMLAYSSIAHAGYLLLgLAAGTPLgVSAALFYllAYLFMNLG 336

                        250       260       270       280       290       300       310
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 354992362 215 IFLTMNTTNTLKLPTLMTS-----WTKMPTLNTTLMLTLLSLAGLPPLTGFLPKWLIIQELTKQEMTTTATI 281
Cdd:COG1007  337 AFAVILLLSRKGGEAEEIEdlaglARRSPLLALAMTIFLLSLAGIPPTAGFFGKFYVFSAAVEAGLYWLAVI 408
NDH_I_N TIGR01770
proton-translocating NADH-quinone oxidoreductase, chain N; This model describes the 14th ...
 14-282 1.14e-16

proton-translocating NADH-quinone oxidoreductase, chain N; This model describes the 14th (based on E. coli) structural gene, N, of bacterial and chloroplast energy-transducing NADH (or NADPH) dehydrogenases. This model does not describe any subunit of the mitochondrial complex I (for which the subunit composition is very different), nor NADH dehydrogenases that are not coupled to ion transport. The Enzyme Commission designation 1.6.5.3, for NADH dehydrogenase (ubiquinone), is applied broadly, perhaps unfortunately, even if the quinone is menaquinone (Thermus, Mycobacterium) or plastoquinone (chloroplast). For chloroplast members, the name NADH-plastoquinone oxidoreductase is used for the complex and this protein is designated as subunit 2 or B. This model also includes a subunit of a related complex in the archaeal methanogen, Methanosarcina mazei, in which F420H2 replaces NADH and 2-hydroxyphenazine replaces the quinone. [Energy metabolism, Electron transport]


Pssm-ID: 273795 [Multi-domain]  Cd Length: 468  Bit Score: 80.76  E-value: 1.14e-16
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 354992362   14 LLGTTITITSNHWMMAWTGLEINTLAI-IPHISKSHHPRAIEATTKYFLVQATASALMLFSSMINAQLTGQWDITQLTYP 92
Cdd:TIGR01770 112 LLGIFLLVSSNDLLSIYLGLELQSLCFyVLAGLKRKSRFSTEAGLKYFILGAFSSGLLLFGISLIYGFTGSLNFEDLLLF 191

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 354992362   93 PSC------------LLLTTAIAIKLGLAPFHFWFPDVLQGSPLTTALLLSTLMKLPPTTILL-------LTSHSLNPTL 153
Cdd:TIGR01770 192 LSNgmlnisllllgiVLILVGLLFKLSAVPFHMWVPDVYEGAPTPVTAFFSIVPKIAIFAVFLrlflyilFGFSEAWQIF 271

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 354992362  154 LTTMSITSIALGGWMGLNQTQTRKILAFSSISHLGW----MTIITTYNPKLTLLTFYTYTLMTTAIFLTMNTTNTLKLP- 228
Cdd:TIGR01770 272 LAIIAFLSMLIGNFGALAQKKVKRLLAYSSISHVGYiligLLAGTLEGIKAVLFYIFIYALMSLGAFGVLSLLRSYKDEw 351

                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|....*....
gi 354992362  229 ----TLMTSWTKM-PTLNTTLMLTLLSLAGLPPLTGFLPKWLIIQELTKQEMTTTATII 282
Cdd:TIGR01770 352 ieyiSDFAGLFKTnPILAILILIFMFSLAGIPPLAGFFGKFYVFFALLKSGLYWLAVIA 410
 
Name Accession Description Interval E-value
ND2 MTH00112
NADH dehydrogenase subunit 2; Provisional
 1-346 3.30e-138

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214423 [Multi-domain]  Cd Length: 346  Bit Score: 396.12  E-value: 3.30e-138
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 354992362   1 MNPLTKFISTMSLLLGTTITITSNHWMMAWTGLEINTLAIIPHISKSHHPRAIEATTKYFLVQATASALMLFSSMINAQL 80
Cdd:MTH00112   1 MNPHAKLIITTSLILGTIITISSNHWLMAWTGLEINTLAIIPLISKPHHPRATEAATKYFLTQAAASALILFSSTTNAWN 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 354992362  81 TGQWDITQLTYPPSCLLLTTAIAIKLGLAPFHFWFPDVLQGSPLTTALLLSTLMKLPPTTILLLTSHSLNPTLLTTMSIT 160
Cdd:MTH00112  81 TGQWDITQLTNPTSCTLLTLALAMKLGLAPFHFWLPEVLQGSTTTTALILSTWQKLAPLTLLLMTSNSLNPTLLLTLAIL 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 354992362 161 SIALGGWMGLNQTQTRKILAFSSISHLGWMTIITTYNPKLTLLTFYTYTLMTTAIFLTMNTTNTLKLPTLMTSWTKMPTL 240
Cdd:MTH00112 161 STLIGGWGGLNQTQLRKIMAFSSIAHLGWMIAIITYSPKLTLLTFYIYILMTTPMFLTLNTTSTKTLKDMMTSWTKSPTL 240

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 354992362 241 NTTLMLTLLSLAGLPPLTGFLPKWLIIQELTKQEMTTTATIISLLSLLGLFFYLRLGYCSTITLPPNPSNKMKQWSTKKP 320
Cdd:MTH00112 241 NTTLMLTLLSLAGLPPLTGFMPKWLILQELTKQNMTPTATIMAMLSLLSLFFYLRLTYISTITLPPNTTNMMMKWRTKPK 320

                        330       340
                 ....*....|....*....|....*.
gi 354992362 321 TNNLTPTLTSLSTLLLPLSPTILATI 346
Cdd:MTH00112 321 KNTLTATLTTLSTLLLPLSPMILTII 346
ND2 MTH00070
NADH dehydrogenase subunit 2; Provisional
 1-323 6.45e-114

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177142 [Multi-domain]  Cd Length: 346  Bit Score: 334.20  E-value: 6.45e-114
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 354992362   1 MNPLTKFISTMSLLLGTTITITSNHWMMAWTGLEINTLAIIPHISKSHHPRAIEATTKYFLVQATASALMLFSSMINAQL 80
Cdd:MTH00070   1 MSPYALSILLSSLALGTMITLSSNHWFLAWMGLEINTLAIIPLMTKTHHPRATEAATKYFLTQASASALILFSSTINAWF 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 354992362  81 TGQWDITQLTYPPSCLLLTTAIAIKLGLAPFHFWFPDVLQGSPLTTALLLSTLMKLPPTTILLLTSHSLNPTLLTTMSIT 160
Cdd:MTH00070  81 TGEWTIMNMQTPLPTIMLTIALMMKLGIAPFHFWLPEVLQGLDLTTGLILSTWQKLAPMALLIQISHLLNSNLLIIMGLL 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 354992362 161 SIALGGWMGLNQTQTRKILAFSSISHLGWMTIITTYNPKLTLLTFYTYTLMTTAIFLTMNTTNTLKLPTLMTSWTKMPTL 240
Cdd:MTH00070 161 STLIGGWGGLNQTQLRKIMAYSSIAHLGWMIIILTFSPHLTLLNLLIYLIMTSSMFLMLMNLNSTNINKLSSSWSKNPTL 240

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 354992362 241 NTTLMLTLLSLAGLPPLTGFLPKWLIIQELTKQEMTTTATIISLLSLLGLFFYLRLGYCSTITLPPNPSNKMKQWSTKKP 320
Cdd:MTH00070 241 TSMMMLTLLSLGGLPPTTGFIPKWLILQELTKQNLTTLATLMALSALLSLFFYLRLSYAMSLTTSPNTSNSKLYWRFKNK 320


                 ...
gi 354992362 321 TNN 323
Cdd:MTH00070 321 TNN 323
ND2 MTH00135
NADH dehydrogenase subunit 2; Provisional
 1-320 1.82e-112

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177193 [Multi-domain]  Cd Length: 347  Bit Score: 330.61  E-value: 1.82e-112
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 354992362   1 MNPLTKFISTMSLLLGTTITITSNHWMMAWTGLEINTLAIIPHISKSHHPRAIEATTKYFLVQATASALMLFSSMINAQL 80
Cdd:MTH00135   1 MNPYVLTILLFSLGLGTTLTFASSHWLLAWMGLEINTLAIIPLMAQHHHPRAVEATTKYFLTQATAAAMILFASTTNAWL 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 354992362  81 TGQWDITQLTYPPSCLLLTTAIAIKLGLAPFHFWFPDVLQGSPLTTALLLSTLMKLPPTtILLLTSHSLNPTLLTTMSIT 160
Cdd:MTH00135  81 TGQWDIQQMSHPLPTTMITLALALKIGLAPLHFWLPEVLQGLDLTTGLILSTWQKLAPF-ALILQIAPTNPTLLITLGLT 159

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 354992362 161 SIALGGWMGLNQTQTRKILAFSSISHLGWMTIITTYNPKLTLLTFYTYTLMTTAIFLTMNTTNTLKLPTLMTSWTKMPTL 240
Cdd:MTH00135 160 STLVGGWGGLNQTQLRKILAYSSIAHLGWMILVLQFSPSLTLLALLTYIIMTSSAFLTFKLNSSTKINTLATSWTKAPAL 239

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 354992362 241 NTTLMLTLLSLAGLPPLTGFLPKWLIIQELTKQEMTTTATIISLLSLLGLFFYLRLGYCSTITLPPNPSNKMKQWSTKKP 320
Cdd:MTH00135 240 TALTPLILLSLGGLPPLTGFMPKWLILQELTKQDLPLTATLAALSALLSLYFYLRLSYAMTLTISPNTLNGTTPWRLPST 319
ND2 MTH00105
NADH dehydrogenase subunit 2; Provisional
 1-322 6.93e-100

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177167 [Multi-domain]  Cd Length: 347  Bit Score: 298.68  E-value: 6.93e-100
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 354992362   1 MNPLTKFISTMSLLLGTTITITSNHWMMAWTGLEINTLAIIPHISKSHHPRAIEATTKYFLVQATASALMLFSSMINAQL 80
Cdd:MTH00105   1 MNPLILIIIYLTLFLGTMITMISSHWLLAWIGLEMNMLAIIPILMKKHNPRSTEAATKYFLTQATASMLLMMAIIINLMY 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 354992362  81 TGQWDITQLTYPPSCLLLTTAIAIKLGLAPFHFWFPDVLQGSPLTTALLLSTLMKLPPTTILLLTSHSLNPTLLTTMSIT 160
Cdd:MTH00105  81 SGQWTITKLTNPTASTLMTIALAMKLGLAPFHFWVPEVTQGIPLSSGMILLTWQKLAPLSILYQISPSINPNLLLTLAIL 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 354992362 161 SIALGGWMGLNQTQTRKILAFSSISHLGWMTIITTYNPKLTLLTFYTYTLMTTAIFLTMNTTNTLKLPTLMTSWTKMPTL 240
Cdd:MTH00105 161 SILIGGWGGLNQTQLRKILAYSSIAHMGWMTAILPYNPTLTLLNLLIYIIMTLTMFMLLMLNSSTTTLSLSHTWNKTPLM 240

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 354992362 241 NTTLMLTLLSLAGLPPLTGFLPKWLIIQELTKQEMTTTATIISLLSLLGLFFYLRLGYCSTITLPPNPSN-KMK-QWSTK 318
Cdd:MTH00105 241 TSLILLTLLSLGGLPPLTGFMPKWMIIQELTKNNNIILPTLMAITALLNLYFYMRLIYSTSLTMFPSTNNmKMKwQFENT 320


                 ....
gi 354992362 319 KPTN 322
Cdd:MTH00105 321 KPMT 324
ND2 MTH00200
NADH dehydrogenase subunit 2; Provisional
 1-323 1.48e-86

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177246 [Multi-domain]  Cd Length: 347  Bit Score: 264.52  E-value: 1.48e-86
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 354992362   1 MNPLTKFISTMSLLLGTTITITSNHWMMAWTGLEINTLAIIPHISKSHHPRAIEATTKYFLVQATASALMLFSSMINAQL 80
Cdd:MTH00200   1 MSPLILPLFILSLGLGTLLTFSSSHWFLIWLGLEINTLAIIPLLIKQHHPRKVEATTKYFIIQATASALLLFGGLLNAWT 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 354992362  81 TGQWDITQLTYPPSCLLLTTAIAIKLGLAPFHFWFPDVLQGSPLTTALLLSTLMKLPPTTILLLTSHSLNPTLLTTMSIT 160
Cdd:MTH00200  81 SGQWGISEMLGPLSETLILLALALKLGLAPGHFWVPDVLQGLSLQTGLILSTWQKLAPFALLIQLAPALNSNILLLLGLL 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 354992362 161 SIALGGWMGLNQTQTRKILAFSSISHLGWMTIITTYNPKLTLLTFYTYTLMTTAIFLTMNTTNTLKLPTLMTSWTKMPTL 240
Cdd:MTH00200 161 SVLVGGWGGLNQTQLRKILAYSSIAHLGWLLSGLVYSPNLALLYLLLYVIITLTVFLLLNLLNSTKINSLSSSKTKNPIL 240

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 354992362 241 NTTLMLTLLSLAGLPPLTGFLPKWLIIQELTKQEMTTTATIISLLSLLGLFFYLRLGYCSTITLPPNPSNKMKQWSTKKP 320
Cdd:MTH00200 241 SMLLGLTLLSLGGLPPLTGFFPKWLILQELSKQGLFIYATILLLGSLLSLFFYLRLSYLTLLTLSPNQINMMSSWRTKSN 320


                 ...
gi 354992362 321 TNN 323
Cdd:MTH00200 321 SNL 323
ND2 MTH00041
NADH dehydrogenase subunit 2; Validated
 1-267 1.49e-76

NADH dehydrogenase subunit 2; Validated


Pssm-ID: 177116 [Multi-domain]  Cd Length: 349  Bit Score: 239.06  E-value: 1.49e-76
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 354992362   1 MNPLTKFISTMSLLLGTTITITSNHWMMAWTGLEINTLAIIPHISKSHHPRAIEATTKYFLVQATASALMLFSSMINAQL 80
Cdd:MTH00041   1 MNRNVLIFLITSIILGTIIVISSNHWFLIWLGLELNTLSIIPILSSNFSPRSVEATIKYFLVQAFSAAILLNGALIQAWL 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 354992362  81 TGQWDITQLTYPPSCLLLTTAIAIKLGLAPFHFWFPDVLQGSPLTTALLLSTLMKLPPTTILLLTSHSLNPTLLTTMSIT 160
Cdd:MTH00041  81 SGSWSINGPLNTLSSIIITLALALKLGLAPCHFWFPDVLQGLPFLQGLIIATWQKIAPLILLISISNLLNSNILILCGIL 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 354992362 161 SIALGGWMGLNQTQTRKILAFSSISHLGWMTIITTYNPKLTLLTFYTYTLMTTAIFLTMNTTNTLKLPTLMTSWTKMPTL 240
Cdd:MTH00041 161 SVLVGGWGGLNQTQTRKILAFSSIAHLGWIIITSAYSPNASIIMFLIYIIINTSIFLIGNNFSLSTLSHLNKLSQLNPIS 240

                        250       260
                 ....*....|....*....|....*..
gi 354992362 241 NTTLMLTLLSLAGLPPLTGFLPKWLII 267
Cdd:MTH00041 241 AFLFILSILSLGGLPPLTGFLNKFISL 267
ND2 MTH00160
NADH dehydrogenase subunit 2; Provisional
 1-282 7.23e-50

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214442 [Multi-domain]  Cd Length: 335  Bit Score: 169.62  E-value: 7.23e-50
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 354992362   1 MNPLTKFISTMSLLLGTTITITSNHWMMAWTGLEINTLAIIPHISKSHHPRAIEATTKYFLVQATASALMLFSSMINAQL 80
Cdd:MTH00160   2 MMNSSKLLFLSTLIMGTLISISSNSWFGAWMGLEINLLSFIPLISNKKNLMSSESSLKYFLIQALASIILLFSIILNMLN 81

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 354992362  81 TGqwditqLTYPPSCLLLTTAIAIKLGLAPFHFWFPDVLQGSPLTTALLLSTLMKLPPttiLLLTSHSLNPTLLTTMSIT 160
Cdd:MTH00160  82 LM------LFNNISSMLINSSLLLKLGAAPFHFWFPEVMEGLSWINCFILMTWQKIAP---LILLSYLINNNFIIIIIIL 152

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 354992362 161 SIALGGWMGLNQTQTRKILAFSSISHLGWMTIITTYNPKLTLLTFYTYTLMTTAIFLTMNTTNTLKLPTLMTSWTKMPTL 240
Cdd:MTH00160 153 SAIIGAIGGLNQTSLRKILAYSSINHLGWMLSSMMISENLWLIYFLIYSIISLSIILLFNKFNIFFLNQLFNSNNKSKKI 232

                        250       260       270       280
                 ....*....|....*....|....*....|....*....|..
gi 354992362 241 NTTLMLTLLSLAGLPPLTGFLPKWLIIQELTKQEMTTTATII 282
Cdd:MTH00160 233 KFLLFLNLLSLGGLPPFLGFLPKWIIIQLLISNNMFFLLFIL 274
ND2 MTH00144
NADH dehydrogenase subunit 2; Provisional
 6-275 6.34e-42

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214432 [Multi-domain]  Cd Length: 328  Bit Score: 148.50  E-value: 6.34e-42
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 354992362   6 KFISTMSLLLGTTITITSNHWMMAWTGLEINTLAIIPHISKSHHPRAIEATTKYFLVQATASALMLFSSMINAQLTGQWD 85
Cdd:MTH00144   6 NLLFLFLMVMGTLLSLSSSHWLGVWVGLEINLIGFLPLLVYKKKSSESESVVKYFIIQSLGSSLLIFGSLIMYNLSFSWF 85

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 354992362  86 ITqltyppscLLLTTAIAIKLGLAPFHFWFPDVLQGSPLTTALLLSTLMKLPPttILLLTSHSLNPTLLTT---MSITSI 162
Cdd:MTH00144  86 SM--------SLLLLGLCLKLGLFPFHFWVPSVMAGLSWLSCFLLLTWQKVAP--LFLLSNFLDLYWLAYLlcvISVLSA 155

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 354992362 163 ALGGWMGLNQTQTRKILAFSSISHLGWMTIITTYNPKLTLLTFYTYTLMTTAIFLTMNTTNTlKLPTLMTSWTKMPTLNT 242
Cdd:MTH00144 156 LVGSIGGLNQTQVRALLAYSSISHTGWMLVAILHGSWLMWMYFLIYIVSSGFLFFSLWSGDS-GSMKDLGSLKPSYKTGL 234

                        250       260       270
                 ....*....|....*....|....*....|...
gi 354992362 243 TLMLTLLSLAGLPPLTGFLPKWLIIQELTKQEM 275
Cdd:MTH00144 235 SIISLLLSLGGLPPFLGFCSKLLVLISSMESSP 267
ND2 MTH00011
NADH dehydrogenase subunit 2; Validated
 5-275 1.63e-41

NADH dehydrogenase subunit 2; Validated


Pssm-ID: 164587 [Multi-domain]  Cd Length: 330  Bit Score: 147.62  E-value: 1.63e-41
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 354992362   5 TKFISTMSLLLGTTITITSNHWMMAWTGLEINTLAIIPHISKSHHPRAIEATTKYFLVQATASALMLFSSminaqlTGQW 84
Cdd:MTH00011   7 TMFLFSSTMTLGTLMALSSNNWLFLWMGMELNLLSFVPLMTSSKMNQESEAAVKYFLAQALGSGLLLLGM------TMMW 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 354992362  85 DITQLTYPPSCLLLTTAIAIKLGLAPFHFWFPDVLQGSPLTTALLLSTLMKLPPTTILLLTSHSLNPTLLTTMSITSIAL 164
Cdd:MTH00011  81 SFPSLLKNITALMLLVSLMLKLGMAPCHFWFPSVMSSISWTLCLILSTWQKIAPLSILFFFTSHNILPMMTSMAAMSALA 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 354992362 165 GGWMGLNQTQTRKILAFSSISHLGWMTIITTYNPKLTLLTFYTYTLMTTAIFLTMNTTNTLKLPTLMTSWTKMPTLNTTL 244
Cdd:MTH00011 161 GGLGGMNQTQLRPLLAYSSIGHMGWMTMISVFSPSMAILYFMTYIIITTPLMLLFAYLNAFSTKFNSKISSMSQTTSMSL 240

                        250       260       270
                 ....*....|....*....|....*....|.
gi 354992362 245 MLTLLSLAGLPPLTGFLPKWLIIQELTKQEM 275
Cdd:MTH00011 241 FIMLLSLGGLPPFTGFMPKLMAIETLTSNSM 271
ND2 MTH00197
NADH dehydrogenase subunit 2; Provisional
 7-270 8.14e-37

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177244 [Multi-domain]  Cd Length: 323  Bit Score: 134.80  E-value: 8.14e-37
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 354992362   7 FISTMSLLLGTTITITSNHWMMAWTGLEINTLAIIPHISKSHHPRAIEATTKYFLVQATASALMLFSSMINAqltgqwdI 86
Cdd:MTH00197   1 FLFLFIIFGGVLFSLSSSNWFLVWIGMELNLIGFIPLLSQNKSITENEGAMKYFLFQEFGSALLLMGGSLSF-------S 73

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 354992362  87 TQLTYPPSCLLLTTAIAIKLGLAPFHFWFPDVLQGSPLTTALLLSTLMKLPPttILLLTSHSLNPTLLTTMSITSIALGG 166
Cdd:MTH00197  74 NLYLSLLSVVLVILGLLLKLGAFPFHFWVPSVMESLSWFNCFLLATWQKLAP--LLILAFNSSSFMGLLICSVLSSLIGG 151

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 354992362 167 WMGLNQTQTRKILAFSSISHLGWMTIITTYNPKLTLLTFYTYTLMTTAIFLTMNTTNTLKLPTLMTSWTKMPTLNTTLML 246
Cdd:MTH00197 152 IGGMNQSNIRQLLAYSSIGHTGWMLMSLVYSPSIFMLYYLIYFVIMFMLFLFLSKNNLSSLNQQYSNPESMSSNLVFLGL 231

                        250       260
                 ....*....|....*....|....
gi 354992362 247 TLLSLAGLPPLTGFLPKWLIIQEL 270
Cdd:MTH00197 232 SFLSLGGLPPLSGFFLKWLILTSL 255
Proton_antipo_M pfam00361
Proton-conducting membrane transporter; This is a family of membrane transporters that ...
 23-268 6.21e-25

Proton-conducting membrane transporter; This is a family of membrane transporters that inlcudes some 7 of potentially 14-16 TM regions. In many instances the family forms part of complex I that catalyzes the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane, and in this context is a combination predominantly of subunits 2, 4, 5, 14, L, M and N. In many bacterial species these proteins are probable stand-alone transporters not coupled with oxidoreduction. The family in total represents homologs across the phyla.


Pssm-ID: 425636 [Multi-domain]  Cd Length: 291  Bit Score: 102.01  E-value: 6.21e-25
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 354992362   23 SNHWMMAWTGLEINTLAIIPHI-SKSHHPRAIEATTKYFLVQATASALMLFSSMINAQLTGQWDITQL-TYPPSC----- 95
Cdd:pfam00361   1 ANDLLLMYLGWEAVLLPSYLLIgYWGKSPRSSEAGMKYFLLTLLGSSILLFGISLMYNYTGTLSFDELsKALTGGlnssg 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 354992362   96 -----LLLTTAIAIKLGLAPFHFWFPDVLQGSPLTTALLLSTLM-KLPPTTILLLTS--HSLNPT---LLTTMSITSIAL 164
Cdd:pfam00361  81 llllfLLILVGFLFKSAQVPFHTWLPDAYEGAPTPVSALLAATLvKAGGYGLIRRSLlyLPSSPFiqqILLILAIISMLL 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 354992362  165 GGWMGLNQTQTRKILAFSSISHLGWMTII----TTYNPKLTLLTFYTYTLMTTAIFL--------TMNTTNTLKLPTLmt 232
Cdd:pfam00361 161 GSLAALVQTDIKRLLAYSSISHMGYMLIAlgagTIYGIQAAIFHLLTHGLFSAGLFLcagsviyrRVHTRNIRDYGGL-- 238

                         250       260       270
                  ....*....|....*....|....*....|....*.
gi 354992362  233 sWTKMPTLNTTLMLTLLSLAGLPPLTGFLPKWLIIQ 268
Cdd:pfam00361 239 -AKTMPILALVFLVAMLSLAGLPPTAGFLGKFLILA 273
ND2 MTH00196
NADH dehydrogenase subunit 2; Provisional
 13-267 2.47e-24

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214453 [Multi-domain]  Cd Length: 365  Bit Score: 102.03  E-value: 2.47e-24
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 354992362  13 LLLGTTITITSNHWMMAWTGLEINTLAIIPHI-SKSHHPRAIEATTKYFLVQATASALMLFS-------------SMINA 78
Cdd:MTH00196   2 VALGILCLISSSNWLSVYLAIELQTLSLFILIaQNRGSGYSAEAGLKYFVLGALSSGLFLFGcallcgttgglhlSYINL 81

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 354992362  79 QLTGQWDITQLTYPPSCLLLTTAIAIKLGLAPFHFWFPDVLQGSPLTTALLLSTLMKLPPTTILLltSHSLNPTLLTTMS 158
Cdd:MTH00196  82 VLNSGQSFSSVSVPIGYLLIIVALLFKLSVAPFHMWAPDVYEGAPTKTTALLAIVPKLGIFSILV--SIGLNVNILLIGG 159

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 354992362 159 ITSIALGGWMGLNQTQTRKILAFSSISHLGWMTIITTYNP----KLTLLTFYTYTLMTTAIFLTMNTTNTLKLPTLMTSW 234
Cdd:MTH00196 160 LFSLFVGAIGALNQTKIKRLLAYSGIGHMGFVLWGIEIGSfesiQASLVYLFIYIIMSICVFSIILALNVYKNLIIEFSG 239

                        250       260       270
                 ....*....|....*....|....*....|....*
gi 354992362 235 TKM--PTLNTTLMLTLLSLAGLPPLTGFLPKWLII 267
Cdd:MTH00196 240 LSRrlPILAITLALTFLSIAGIPPLVGFLGKWLIL 274
NuoN COG1007
NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH: ...
 14-281 5.18e-23

NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 2 (chain N) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440631 [Multi-domain]  Cd Length: 473  Bit Score: 99.42  E-value: 5.18e-23
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 354992362  14 LLGTTITITSNHWMMAWTGLEINTLA--IIPHISKsHHPRAIEATTKYFLVQATASALMLF-SSMINAqLTGQWDITQL- 89
Cdd:COG1007  112 TLGMMLMASANDLLTLFLGLELLSLSlyVLVAFRR-DDRRSSEAALKYFLLGALSSGFLLYgISLLYG-ATGSLNLAGIa 189

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 354992362  90 -------TYPP----SCLLLTTAIAIKLGLAPFHFWFPDVLQGSPlttalllstlmklPPTT-----------------I 141
Cdd:COG1007  190 aalaaggANSPllllGLVLVLAGLAFKLSAVPFHMWTPDVYEGAP-------------TPVTaflatapkiaafaallrL 256

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 354992362 142 LLLTSHSLNP---TLLTTMSITSIALGGWMGLNQTQTRKILAFSSISHLGWMTI-ITTYNPK-LTLLTFY--TYTLMTTA 214
Cdd:COG1007  257 LVEAFPGLAAdwqLLLAVLAVLSMTVGNLAALAQTNVKRMLAYSSIAHAGYLLLgLAAGTPLgVSAALFYllAYLFMNLG 336

                        250       260       270       280       290       300       310
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 354992362 215 IFLTMNTTNTLKLPTLMTS-----WTKMPTLNTTLMLTLLSLAGLPPLTGFLPKWLIIQELTKQEMTTTATI 281
Cdd:COG1007  337 AFAVILLLSRKGGEAEEIEdlaglARRSPLLALAMTIFLLSLAGIPPTAGFFGKFYVFSAAVEAGLYWLAVI 408
PRK05777 PRK05777
NADH-quinone oxidoreductase subunit NuoN;
14-281 9.21e-20

NADH-quinone oxidoreductase subunit NuoN;


Pssm-ID: 235603 [Multi-domain]  Cd Length: 476  Bit Score: 89.88  E-value: 9.21e-20
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 354992362  14 LLGTTITITSNHWMMAWTGLEINTLA--IIPHISKsHHPRAIEATTKYFLVQATASALMLF-SSMINAqLTGQWDITQL- 89
Cdd:PRK05777 113 LLGMMVMVSANDLLTLFLGLELLSLPlyALAALRR-DRRRSLEAAIKYFVLGALASGFLLYgMSLLYG-ATGSLSFAGIa 190

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 354992362  90 -------TYPP----SCLLLTTAIAIKLGLAPFHFWFPDVLQGSPLTTALLLSTLMKL----PPTTILLLTSHSLNPT-- 152
Cdd:PRK05777 191 kaladgsGNSLlllfGLVFLLVGLAFKLSAVPFHMWTPDVYEGAPTPVTAFLATAPKIaafaVLLRLLVVAFGGLSEDwq 270

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 354992362 153 -LLTTMSITSIALGGWMGLNQTQTRKILAFSSISHLGWMTI---ITTYNPKLTLLtFY--TYTLMTTAIF--LTMNTTNT 224
Cdd:PRK05777 271 qVLAIIAIASMLVGNLAALSQTNIKRLLAYSSIAHAGYLLVglaAGTAEGYSAVL-FYllAYLFMTLGAFgvISLLRRKG 349

                        250       260       270       280       290       300
                 ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 354992362 225 LKLPTLmTSWT----KMPTLNTTLMLTLLSLAGLPPLTGFLPKWLIIQELTKQEMTTTATI 281
Cdd:PRK05777 350 GEAESI-SDFAglskRSPLLAAVMTIFMLSLAGIPPTAGFWGKFYVFEAAVEAGLWWLAVI 409
ND2 MTH00199
NADH dehydrogenase subunit 2; Provisional
 13-267 1.06e-19

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177245 [Multi-domain]  Cd Length: 460  Bit Score: 89.69  E-value: 1.06e-19
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 354992362  13 LLLGTTITITSNHWMMAWTGLEINTLAI-IPHISKSHHPRAIEATTKYFLVQATASALMLFSSMINAQLTGQWDITQLTY 91
Cdd:MTH00199 106 VALGSLLLVSSINWLSIYLAIELQTLTLfILVALKRDSAYSTEAGLKYFVLGAVSSGLFLFGCALLYGLTGETSIQGINS 185

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 354992362  92 PPSC----LLLTTAIAIKLGLAPFHFWFPDVLQGSPLTTALLLSTLMKLPPTTILLLTSHSLNPTLLTtmSITSIALGGW 167
Cdd:MTH00199 186 ILTGdvgkILITISLLFKLSAAPFHMWAPDVYEGAPTITTALLATVPKIGVFSILVQIGPVTNVVLIC--AVLSIIYGAI 263

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 354992362 168 MGLNQTQTRKILAFSSISHLGW----MTIITTYNPKLTLLTFYTYTLMTTAIF---LTMNTTNTLKLPTLMTSwTKMPTL 240
Cdd:MTH00199 264 GALNQTKIKRLLAYSGIGHMGFilfgVAIGSFESIQASLIYMIIYVIMSICSFsiiLSLKLTKGLIVEVSGLS-RKNPVI 342

                        250       260
                 ....*....|....*....|....*..
gi 354992362 241 NTTLMLTLLSLAGLPPLTGFLPKWLII 267
Cdd:MTH00199 343 ALTLALTFLSIAGIPPLAGFLSKWLIL 369
ND2 MTH00198
NADH dehydrogenase subunit 2; Provisional
 15-267 1.13e-16

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214454 [Multi-domain]  Cd Length: 607  Bit Score: 81.06  E-value: 1.13e-16
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 354992362  15 LGTTITITSNHWMMAWTGLEINTLAIIPHISKSHHPRAI---------EATTKYFLVQATASALMLFSSMINAQLTGQ-- 83
Cdd:MTH00198 199 LGGLLLIESANWLTIYLALEFQTLALFILAGEGSQPGSHfpspgntppESGLKYWILGAMSSGFYLFGCALYFGFTGNeg 278

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 354992362  84 ------------WDITQLTYPPSCLLLTTAIAIKLGLAPFHFWFPDVLQGSPLTTALLLSTLMKLppTTILLLTSHSLNP 151
Cdd:MTH00198 279 mlgtilsatletTNIELRQGSLGYLFITVAILFKLAAAPFHMWTPDVYEGAPTPTTALIAIIPKF--TVYILLTSLVITS 356

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 354992362 152 TLLTTMSITSIALGGWMGLNQTQTRKILAFSSISHLGWMTIITTYNPKLTLLTFYTY--TLMTTAI-----------FLT 218
Cdd:MTH00198 357 KLLLSVAIISLVVGAFGALNQTRIKRLLAYSGIGHIGFILIGVSAGTYESLQASWTYavTYLVSALasftvictleeFGT 436

                        250       260       270       280       290       300
                 ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 354992362 219 MNTTNTLKLPTL-----------MTSWTK-MPTLNTTLMLTLLSLAGLPPLTGFLPKWLII 267
Cdd:MTH00198 437 RTPTSRQRDGSFgnynlvrrlvdLTILSRgQPYIAFSLAIVFLSLAGIPPLLGFLGKWFIL 497
NDH_I_N TIGR01770
proton-translocating NADH-quinone oxidoreductase, chain N; This model describes the 14th ...
 14-282 1.14e-16

proton-translocating NADH-quinone oxidoreductase, chain N; This model describes the 14th (based on E. coli) structural gene, N, of bacterial and chloroplast energy-transducing NADH (or NADPH) dehydrogenases. This model does not describe any subunit of the mitochondrial complex I (for which the subunit composition is very different), nor NADH dehydrogenases that are not coupled to ion transport. The Enzyme Commission designation 1.6.5.3, for NADH dehydrogenase (ubiquinone), is applied broadly, perhaps unfortunately, even if the quinone is menaquinone (Thermus, Mycobacterium) or plastoquinone (chloroplast). For chloroplast members, the name NADH-plastoquinone oxidoreductase is used for the complex and this protein is designated as subunit 2 or B. This model also includes a subunit of a related complex in the archaeal methanogen, Methanosarcina mazei, in which F420H2 replaces NADH and 2-hydroxyphenazine replaces the quinone. [Energy metabolism, Electron transport]


Pssm-ID: 273795 [Multi-domain]  Cd Length: 468  Bit Score: 80.76  E-value: 1.14e-16
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 354992362   14 LLGTTITITSNHWMMAWTGLEINTLAI-IPHISKSHHPRAIEATTKYFLVQATASALMLFSSMINAQLTGQWDITQLTYP 92
Cdd:TIGR01770 112 LLGIFLLVSSNDLLSIYLGLELQSLCFyVLAGLKRKSRFSTEAGLKYFILGAFSSGLLLFGISLIYGFTGSLNFEDLLLF 191

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 354992362   93 PSC------------LLLTTAIAIKLGLAPFHFWFPDVLQGSPLTTALLLSTLMKLPPTTILL-------LTSHSLNPTL 153
Cdd:TIGR01770 192 LSNgmlnisllllgiVLILVGLLFKLSAVPFHMWVPDVYEGAPTPVTAFFSIVPKIAIFAVFLrlflyilFGFSEAWQIF 271

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 354992362  154 LTTMSITSIALGGWMGLNQTQTRKILAFSSISHLGW----MTIITTYNPKLTLLTFYTYTLMTTAIFLTMNTTNTLKLP- 228
Cdd:TIGR01770 272 LAIIAFLSMLIGNFGALAQKKVKRLLAYSSISHVGYiligLLAGTLEGIKAVLFYIFIYALMSLGAFGVLSLLRSYKDEw 351

                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|....*....
gi 354992362  229 ----TLMTSWTKM-PTLNTTLMLTLLSLAGLPPLTGFLPKWLIIQELTKQEMTTTATII 282
Cdd:TIGR01770 352 ieyiSDFAGLFKTnPILAILILIFMFSLAGIPPLAGFFGKFYVFFALLKSGLYWLAVIA 410
HyfB COG0651
Formate hydrogenlyase subunit 3/Multisubunit Na+/H+ antiporter, MnhD subunit [Energy ...
 13-282 1.79e-16

Formate hydrogenlyase subunit 3/Multisubunit Na+/H+ antiporter, MnhD subunit [Energy production and conversion, Inorganic ion transport and metabolism];


Pssm-ID: 440416 [Multi-domain]  Cd Length: 430  Bit Score: 79.81  E-value: 1.79e-16
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 354992362  13 LLLGTTITITSNHWMMAWTGLEINTLAIIPHISKSHHPRAIEATTKYFLVQATASALMLFSSMINAQLTGQWDITQL--- 89
Cdd:COG0651  116 LLAGMNGAFLTGDLFNLFVFFEVMLLASYGLVALGGTKEALRAGLKYLILNLVGSALFLLGVGLLYGATGTLNMADLaar 195

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 354992362  90 --TYPPS-----CLLLTTAIAIKLGLAPFHFWFPDVLQGSPlttalllstlmklPPTT------------------ILLL 144
Cdd:COG0651  196 laELDPGlllaaFALLLVGFGIKAALFPLHFWLPDAYPAAP-------------SPVSallsglltkvgvyailrvLTLL 262

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 354992362 145 TSHSLNP---TLLTTMSITSIALGGWMGLNQTQTRKILAFSSISHLGWMTI-ITTYNPKLTLLTFY---TYTLMTTAIFL 217
Cdd:COG0651  263 FGADPALflgTLLLVLGLLTMLVGALGALAQRDLKRLLAYSSVSQIGYILLgLGLGTPLGLAGALFhllNHALAKALLFL 342

                        250       260       270       280       290       300
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 354992362 218 T----MNTTNTLKLPTLMTSWTKMPTLNTTLMLTLLSLAGLPPLTGFLPKWLIIQELTKQEMTTTATII 282
Cdd:COG0651  343 AagaiERATGTRDLDKLGGLGKRMPLTAAAFLIGALALAGLPPLSGFVSKWLLLQAALEAGAWLLAAVL 411
ndhB CHL00049
NADH dehydrogenase subunit 2
 51-263 6.41e-13

NADH dehydrogenase subunit 2


Pssm-ID: 176990 [Multi-domain]  Cd Length: 494  Bit Score: 69.26  E-value: 6.41e-13
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 354992362  51 RAIEATTKYFLVQATASALML---------------FSSMINAQLTgqwdiTQLTYPPSCLL----LTTAIAIKLGLAPF 111
Cdd:CHL00049 159 RSNEATMKYLLMGGASSSILVygfswlyglsggeieLQEIVNGLIN-----TQMYNSPGISIalifITVGIGFKLSLAPF 233

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 354992362 112 HFWFPDVLQGSPLTTALLLSTLMKLP----PTTILLLTSHSLNP---TLLTTMSITSIALGGWMGLNQTQTRKILAFSSI 184
Cdd:CHL00049 234 HQWTPDVYEGSPTPVVAFLSVTSKVAasalATRIFDIPFYFSSNewhLLLEILAILSMILGNLIAITQTSMKRMLAYSSI 313

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 354992362 185 SHLGWMTI-ITTYNPKLTLLTFYTYTLMTtaIFLTMNTTNTLKLPTLMT----------SWTKMPTLNTTLMLTLLSLAG 253
Cdd:CHL00049 314 GQIGYVIIgIIVGDSNDGYASMITYMLFY--IFMNLGTFACIVLFGLRTgtdnirdyagLYTKDPFLALSLALCLLSLGG 391

                        250
                 ....*....|
gi 354992362 254 LPPLTGFLPK 263
Cdd:CHL00049 392 IPPLAGFFGK 401
NuoM COG1008
NADH:ubiquinone oxidoreductase subunit 4 (chain M) [Energy production and conversion]; NADH: ...
 49-267 1.34e-11

NADH:ubiquinone oxidoreductase subunit 4 (chain M) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 4 (chain M) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440632 [Multi-domain]  Cd Length: 488  Bit Score: 65.10  E-value: 1.34e-11
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 354992362  49 HPRAIEATTKYFLVQATASALMLFSSMINAQLTGQW-----DITQLTYPPS-----CLLLTTAIAIKLGLAPFHFWFPDV 118
Cdd:COG1008  156 GERRIYAAIKFFLYTLAGSLLMLVAILALYFLAGALtfdiaELAAAPLPLTaqlllFLAFFIAFAVKVPMFPFHTWLPDA 235

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 354992362 119 LQGSPlttalllstlmklPPTTILL---------------------LTSHSLNPTLLTtMSITSIALGGWMGLNQTQTRK 177
Cdd:COG1008  236 HVEAP-------------TAGSVLLagvllkmggygllrfalplfpEASAYFAPLLAA-LGVIGIIYGALVALAQTDLKR 301

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 354992362 178 ILAFSSISHLGWMTI-ITTYNPK-LTLLTFY--TYTLMTTAIFL----TMNTTNTLKLPTLMTSWTKMPTLNTTLMLTLL 249
Cdd:COG1008  302 LIAYSSVSHMGFVLLgIFALNPLgLQGAVLQmvSHGLITAALFLlvgvLYDRTHTRDIADLGGLAKRMPVLAALFLLAAL 381

                        250
                 ....*....|....*...
gi 354992362 250 SLAGLPPLTGFLPKWLII 267
Cdd:COG1008  382 ASLGLPGTSGFVGEFLVL 399
PRK08668 PRK08668
NADH dehydrogenase subunit M; Validated
 34-282 1.41e-10

NADH dehydrogenase subunit M; Validated


Pssm-ID: 236332 [Multi-domain]  Cd Length: 610  Bit Score: 62.32  E-value: 1.41e-10
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 354992362  34 EINTLA---IIPHISKshhpRAIEATTKYFLVQATASALMLFSSMINAQLTGQWDITQ----LTYPPS-------CLLLT 99
Cdd:PRK08668 128 EIMTFSsfmMVPMGKK----ESRKASLKYFVLSAIGAYAMLYAIFLIYAKTGTFDFADisqgLINDTStgfalivFLFLL 203

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 354992362 100 TAIAIKLGLAPFHFWFPDVLQGSPLTTALL------------LSTLMKLPPTTILLLT-----SHSLNPTLLTTMSITSI 162
Cdd:PRK08668 204 AFGVAKAGIFPLHVWAPDAYSEAPQSFSAVlsgqlsklgaygFLLVLYVLPGTKLFSEfgtyrGVPLFNYILAWLGNISI 283

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 354992362 163 ALGGWMGLNQTQTRKILAFSSISHLGWMTI----ITTYNPKLTLLTFYTYTLMTTAIFLTMNT----TNTLKLPTLMTSW 234
Cdd:PRK08668 284 IVGTLMAILQEDIKKLIAYSSVANGGYILVglglGTSLGFAGGLFHVFNHALFKGLFFLIFAAviyrTGTTKISEMGGLI 363

                        250       260       270       280
                 ....*....|....*....|....*....|....*....|....*...
gi 354992362 235 TKMPTLNTTLMLTLLSLAGLPPLTGFLPKWLIIQELTKQEMTTTATII 282
Cdd:PRK08668 364 EKMPFTFAMYLVAIISLAGIPPMSGFASKWLIFEALISKGMPITAFMA 411
PRK08376 PRK08376
putative monovalent cation/H+ antiporter subunit D; Reviewed
 33-266 6.27e-10

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 236252 [Multi-domain]  Cd Length: 521  Bit Score: 60.11  E-value: 6.27e-10
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 354992362  33 LEINTLAIIPHIS-KSHHPRAIEATTKYFLVQATASALMLFSSminAQLTGQWDITQLTY-------PPSCL------LL 98
Cdd:PRK08376 150 LEIMSIASYALVAfRNDTWEAIEAGIKYMFVGSLASSMVLLGI---ALLYGQYGTLNMAYlavkmseNPTVVakialaLF 226

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 354992362  99 TTAIAIKLGLAPFHFWFPDVLQGSPLTTALLLSTLMKLPPTTI----LLLTSHSLNPT----LLTTMSITSIALGGWMGL 170
Cdd:PRK08376 227 IAGLAMKSGAVPVHMWLPDAYPAAPSSISAMLLVIKQAGLYALarvlFSIYGPAINLAtvgwVIIILGCLTMFVGVAMAV 306

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 354992362 171 NQTQTRKILAFSSISHLGWMTI-----ITTYNPklTLLTFYTYTLMTTAIFLTMN-----------------TTNTLKLP 228
Cdd:PRK08376 307 VQKDVKRLLAYHSVSQIGYMLLglgvgLAALGD--PAMASYGEIALAGGIYHIVNhalykallfltagaviyETGTRNLN 384

                        250       260       270
                 ....*....|....*....|....*....|....*...
gi 354992362 229 TLMTSWTKMPTLNTTLMLTLLSLAGLPPLTGFLPKWLI 266
Cdd:PRK08376 385 ELGGLARTMPKTTIAFLIGAAAIVGLPPFNGFASKWLI 422
NDH_I_M TIGR01972
proton-translocating NADH-quinone oxidoreductase, chain M; This model describes the 13th ...
 50-268 6.69e-09

proton-translocating NADH-quinone oxidoreductase, chain M; This model describes the 13th (based on E. coli) structural gene, M, of bacterial NADH dehydrogenase I, as well as chain 4 of the corresponding mitochondrial complex I and of the chloroplast NAD(P)H dehydrogenase complex. [Energy metabolism, Electron transport]


Pssm-ID: 273903 [Multi-domain]  Cd Length: 481  Bit Score: 56.87  E-value: 6.69e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 354992362   50 PRAIEATTKYFLVQATASALMLfSSMINAQLTGQW-----DITQLTYPPSC-----LLLTTAIAIKLGLAPFHFWFPDV- 118
Cdd:TIGR01972 152 PNRIYAAMKFFLYTLAGSLLML-LAILGLYFLGGGtfdllELLNLPLPFGVqtwlfLAFFIAFAVKVPLFPLHTWLPDAh 230

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 354992362  119 LQGSPLTTALLLSTLMKLPPTTILLL-------TSHSLNPtLLTTMSITSIALGGWMGLNQTQTRKILAFSSISHLGWMT 191
Cdd:TIGR01972 231 VEAPTAGSVILAGVLLKMGTYGFLRFnlplfpdASLYFAP-VLAALGVIAIIYGALIALAQTDIKRLIAYSSISHMGFVL 309

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 354992362  192 I-ITTYNPKLT---LLTFYTYTLMTTAIFLTMNT----TNTLKLPTLMTSWTKMPTLNTTLMLTLLSLAGLPPLTGFLPK 263
Cdd:TIGR01972 310 LgIFSFNELGIsgaVFQMISHGLITAALFLLVGVlyerAHTRDIAKYGGLANKMPVLAAFFMLFAMASLGLPGTSGFVGE 389


                  ....*
gi 354992362  264 WLIIQ 268
Cdd:TIGR01972 390 FLILL 394
NuoL COG1009
Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ ...
 48-270 1.85e-08

Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ antiporter, MnhA subunit [Energy production and conversion]; Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ antiporter, MnhA subunit is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440633 [Multi-domain]  Cd Length: 608  Bit Score: 55.93  E-value: 1.85e-08
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 354992362  48 HHPRAIEATTKYFLVQATASALMLFSSMINAQLTGQWDITQL-----------TYPPSCLLLTTAIAIKLGLAPFHFWFP 116
Cdd:COG1009  156 EKPSARRAARKAFLVTRVGDLGLLLGILLLGAIAGTLNFSELlaaaptilsspLLTLILLLLLLGAFGKSAQFPLHFWLP 235

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 354992362 117 DVLQGsplttalllstlmklpPTTI---------------LLLTSH---SLNPTLLTTMSITSIA---LGGWMGLNQTQT 175
Cdd:COG1009  236 DAMEG----------------PTPVsallhaatmvkagvyLLARLSplfALSPVWLTVVAIIGAItalFAALIALAQTDI 299

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 354992362 176 RKILAFSSISHLGWMTIittynpkltLLTFYTYT-----LMTTAIF------------LTMNTTNTLKLPTLmtsWTKMP 238
Cdd:COG1009  300 KRVLAYSTVSQLGYMFL---------ALGVGAYVaalfhLLTHAFFkallflgagsviHATGTRDIRKMGGL---RKKMP 367

                        250       260       270
                 ....*....|....*....|....*....|..
gi 354992362 239 TLNTTLMLTLLSLAGLPPLTGFLPKWLIIQEL 270
Cdd:COG1009  368 ITAITFLIGALSLAGIPPFAGFFSKEAILEAA 399
PRK02504 PRK02504
NAD(P)H-quinone oxidoreductase subunit N;
50-263 2.37e-08

NAD(P)H-quinone oxidoreductase subunit N;


Pssm-ID: 235044 [Multi-domain]  Cd Length: 513  Bit Score: 55.44  E-value: 2.37e-08
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 354992362  50 PRAIEATTKYFLVQATASALMLF-SSMINAQLTGQWDIT----QLTYPPSCLLLTT------AIAIKLGLAPFHFWFPDV 118
Cdd:PRK02504 157 PRSNEAALKYLLIGAASSAIFLYgSSLLYGLSGGSTQLSaialALITSPSLGLALAlvfviaGIAFKISAVPFHQWTPDV 236

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 354992362 119 LQGSPLTTALLLSTLMKLPPTTI---LLLTSHSLNPT----LLTTMSITSIALGGWMGLNQTQTRKILAFSSISHLGWMT 191
Cdd:PRK02504 237 YEGSPTPVVAFLSVGSKAAGFALairLLVTAFPSFDEqwklLFTALAILSMVLGNVVALAQTSMKRMLAYSSIGQAGFVM 316

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 354992362 192 I--ITTYNPKLTLLTFY--TYTLMT----TAIFLTMNTTNTLKLPTLMTSWTKMPTLNTTLMLTLLSLAGLPPLTGFLPK 263
Cdd:PRK02504 317 IglVAGTEAGYASMVFYllAYLFMNlgafACVILFSLRTGTDQISDYAGLYQKDPLLTLGLSLCLLSLGGIPPLAGFFGK 396
PRK12644 PRK12644
putative monovalent cation/H+ antiporter subunit A; Reviewed
 61-263 1.32e-07

putative monovalent cation/H+ antiporter subunit A; Reviewed


Pssm-ID: 237154 [Multi-domain]  Cd Length: 965  Bit Score: 53.39  E-value: 1.32e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 354992362  61 LVQATASAL-MLFSSMINAQLTGQWDITQL-TYPPSCLLLTTAIAI-------KLGLAPFHFWFPDVLQG-SPLTTALLL 130
Cdd:PRK12644 163 LLVTTAGGLaMLVGIIILGQAAGTYRLSELlADPPTGPAVSVAVVLilvgalsKSAIVPFHFWLPGAMAApTPVSAYLHA 242

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 354992362 131 STLMKLPPTTILLLT-----SHSLNPTLLTTMSITSIaLGGWMGLNQTQTRKILAFSSISHLGWMTIITTYNPK------ 199
Cdd:PRK12644 243 AAMVKAGIYLVARLApgfadVPVWRPTVLVLGLATML-LGGWRALRQHDLKLILAYGTVSQLGFLTVLVGIGTRdaalag 321

                        170       180       190       200       210       220
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 354992362 200 LTLLTfyTYTLMTTAIFLTM----NTTNTLKLPTLMTSWTKMPTLNTTLMLTLLSLAGLPPLTGFLPK 263
Cdd:PRK12644 322 LAMLL--AHALFKAALFLVVgiidHSTGTRDIRKLSGLGRRQPVLAVVAALAAASMAGLPPLLGFVAK 387
PRK08375 PRK08375
putative monovalent cation/H+ antiporter subunit D; Reviewed
 33-270 3.72e-07

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 236251 [Multi-domain]  Cd Length: 487  Bit Score: 51.42  E-value: 3.72e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 354992362  33 LEINTLAIIPHISKSHHPRAIEATTKYFLVQATASALMLFSSMINAQLTGQWDITQLT--YPPSCLLLT------TAIAI 104
Cdd:PRK08375 135 LEIMSLSSYALVAMGGDRRALAAARKYLIVGLIGSTFLLIGVGLLYGVTGTLNMADLAgaLAENPTVVTafgfvlLALAL 214

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 354992362 105 KLGLAPFHFWFPDVLQG-SPLTTALLLSTLMKLPPTTILLLTSH----------SLNPTLLTTMSItSIALGGWMGLNQT 173
Cdd:PRK08375 215 KAAVFPLHTWLPRAYPAaPPVVTALLSGLVTKVAVYALIRIYFTvfggdfrfalGLGWLLAVLALL-SMLVGSLAALGQD 293

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 354992362 174 QTRKILAFSSISHLGWMTI-ITTYNPK-LTLLTFYT--YTLMTTAIFLT----MNTTNTLKLPTLMTSWTKMPTLNTTLM 245
Cdd:PRK08375 294 DVKRVLAYSTVSQMGYILLgLALLTPLaLAAGLLHLlhHALMKGALFLAagaiEVTYGTRRLSELSGLGRRMPLTAAAFA 373

                        250       260
                 ....*....|....*....|....*
gi 354992362 246 LTLLSLAGLPPLTGFLPKWLIIQEL 270
Cdd:PRK08375 374 VASLSLIGVPPTSGFVSKWYLVVGA 398
PRK05846 PRK05846
NADH:ubiquinone oxidoreductase subunit M; Reviewed
 50-192 6.40e-07

NADH:ubiquinone oxidoreductase subunit M; Reviewed


Pssm-ID: 235622 [Multi-domain]  Cd Length: 497  Bit Score: 50.97  E-value: 6.40e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 354992362  50 PRAIEATTKYFLVQATASALMLFSSM----INAQLTGQWDITQLTYPPSCLLLTT--------AIAIKLGLAPFHFWFPD 117
Cdd:PRK05846 157 KNRIYAATKFFLYTLLGSLLMLVAIIylvvVYYNATGTFDIADLLNLPLPPGVQYwlflaffiAFAVKMPMFPLHTWLPD 236

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 354992362 118 VLQGSPlttalllstlmklPPTTILL---------------------LTSHSLNPtLLTTMSITSIALGGWMGLNQTQTR 176
Cdd:PRK05846 237 AHVQAP-------------TAGSVLLagillkmgaygllrfslplfpDASHEFAP-IIITLGVIAIIYGALVALAQTDIK 302

                        170
                 ....*....|....*.
gi 354992362 177 KILAFSSISHLGWMTI 192
Cdd:PRK05846 303 KLIAYSSISHMGFVTL 318
PRK12649 PRK12649
putative monovalent cation/H+ antiporter subunit A; Reviewed
 48-263 1.29e-06

putative monovalent cation/H+ antiporter subunit A; Reviewed


Pssm-ID: 183649 [Multi-domain]  Cd Length: 789  Bit Score: 50.21  E-value: 1.29e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 354992362  48 HHPRAIEATTKYFLVQATASALMLFSSMINAQLTGQWDITQLTYPPSC--------LLLTTAIAIKLGLA------PFHF 113
Cdd:PRK12649 156 HRPESVYGATKSLLITAGGGLFMFAGFLLLHVITGTYDIATILQDSELienikghpLFLITLILIFIGAAaksaqgPFYI 235

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 354992362 114 WFPDVLQGSPLTTALLLSTLMKLPPTTILLLTSHSLNPT-----LLTTMSITSIALGGWMGLNQTQTRKILAFSSISHLG 188
Cdd:PRK12649 236 WLPNAMEAPTPVSAFLHSATMVKAGVYLVARIHPIFSGTeawfiLVSGTGMITMVLAGFLAFRQTDIKAILAYSTISQLA 315

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 354992362 189 WMTII---TTYNPKLTLLTFYTYTLMTTAIF---------LTMNTTNTLKLPTLMTSWTKMPTLNTTLMLTLLSLAGLPP 256
Cdd:PRK12649 316 YLMTMygyTTYHEPGLGVAAATFHLLNHATFkaclflvagIVAHEAATRDIRKLGGLRKEMPITFIVASIAALAMAGIPP 395


                 ....*..
gi 354992362 257 LTGFLPK 263
Cdd:PRK12649 396 LNGFLSK 402
PRK12667 PRK12667
putative monovalent cation/H+ antiporter subunit D; Reviewed
 48-282 2.73e-06

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 237167 [Multi-domain]  Cd Length: 520  Bit Score: 48.81  E-value: 2.73e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 354992362  48 HHPRAIEATTKYFLVQATASALMLFS-----------SMINAQLTGQWDITQLTYPPS----------CLLLTTAIAIKL 106
Cdd:PRK12667 158 DRGDAVEAAIKYALIGAVGTTLYFLAlaflyatfgtlNMADLSAKIRGLSFPLTGGLAgnpplalgvaLALALWAFTIKA 237

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 354992362 107 GLAPFHFWFPDVLQGSPLTTALLLSTLMK--------------LPPTTILLLTSHSLNPTLLTTMSITSIaLGGWMGLNQ 172
Cdd:PRK12667 238 AIFPNHFWLPDAHPAAPSPVSAMLSGLVVnvgayaiirflytiFGISPSLIDFRAALSPILIILGAVSAI-IGALMMVVQ 316

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 354992362 173 TQTRKILAFSSISHLGWMTIITTYNPKLTLLTFYTYTL----------MTTAIFLtmNTTNTLKLPTLMTSWTKMPTLNT 242
Cdd:PRK12667 317 KDVKRLLAYSTISHMGYIFMGIGIGTQLGLAAALFHIInhaiaksllfLASGVFI--HAAGTRDIDELAGLGRKMPIASF 394

                        250       260       270       280
                 ....*....|....*....|....*....|....*....|
gi 354992362 243 TLMLTLLSLAGLPPLTGFLPKWLIIQELTKQEMTTTATII 282
Cdd:PRK12667 395 AFLIGALSLVGIPPLNGFFSKLLLFNALLESGFYLPALVL 434
PRK12650 PRK12650
DUF4040 family protein;
98-263 6.80e-06

DUF4040 family protein;


Pssm-ID: 237158 [Multi-domain]  Cd Length: 962  Bit Score: 48.12  E-value: 6.80e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 354992362  98 LTTAIAIKLGLA--------PFHFWFPDVLQG-SPLTTALLLSTLMKlppTTILLLTSHSL----NPT---LLTTMSITS 161
Cdd:PRK12650 206 LTTVVAVLIAVAaftksaqfPFHFWLPEAMAAiTPVSAFLHAAAVVK---AGIYLLLRFSPvfhdVAVwnwLLIIVGMIT 282

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 354992362 162 IALGGWMGLNQTQTRKILAFSSISHLGWM-TIITTYNP-KLTLLTFYT--YTLMTTAIFLTM----NTTNTLKLPTLMTS 233
Cdd:PRK12650 283 ALMGAVFAVQKTDLKKLTAYSTVSQLGWIvATIGVGTPfALTAAVVHTlaHALFKSSLFMLIgvvdHQAGTRDIRRLGSL 362

                        170       180       190
                 ....*....|....*....|....*....|
gi 354992362 234 WTKMPTLNTTLMLTLLSLAGLPPLTGFLPK 263
Cdd:PRK12650 363 WRRMPFTFVSVTIAALSMAAVPPLFGFVSK 392
PRK08676 PRK08676
hydrogenase membrane subunit; Validated
 13-192 9.08e-06

hydrogenase membrane subunit; Validated


Pssm-ID: 181537 [Multi-domain]  Cd Length: 485  Bit Score: 47.06  E-value: 9.08e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 354992362  13 LLLGTTITITSNHWMMAWTGLEINTLAIIPHISKSHHPRAIEATTKYFLVQATA------SALMLFSSMINAQLTGQWDI 86
Cdd:PRK08676 111 LLSVITFAFFSDNLALFWIFAELTTVFSAMLIAILSARENIDAALKYIFIASTAmifafiGLIFLFSLTRQALGTGTLNW 190

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 354992362  87 TQLT-----YPPSCLLLT-----TAIAIKLGLAPFHFWFPDVLQGSPLTTALLLSTLM-KLPPTTIL----LLTSHSLNP 151
Cdd:PRK08676 191 TELAahaslLSPSVLGASflfifIGFLAKSGLVPFHTWLPAAYAKAPSVVSALLSGTVlNIGIYGILrlsaLLRQSGAAE 270

                        170       180       190       200
                 ....*....|....*....|....*....|....*....|....
gi 354992362 152 T---LLTTMSITSIALGGWMGLNQTQTRKILAFSSISHLGWMTI 192
Cdd:PRK08676 271 QfsnVLIGLGIFSIAVAAFSMLSQRNLKKLIAFSSIEHMGLMLL 314
PRK12647 PRK12647
putative monovalent cation/H+ antiporter subunit A; Reviewed
 91-266 3.43e-05

putative monovalent cation/H+ antiporter subunit A; Reviewed


Pssm-ID: 237156 [Multi-domain]  Cd Length: 761  Bit Score: 45.68  E-value: 3.43e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 354992362  91 YPPSCLLLTTAIAIKLGLAPFHFWFPDVlqgsplttalllstlMKLP-PTTILLltsHS-------------LNP----- 151
Cdd:PRK12647 194 YLAILLLVLGGAFTKSAQFPFHFWLPNA---------------MEAPtPVSAYL---HSatmvkagiyllarLNPvlggt 255

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 354992362 152 ----TLLTTMSITSIALGGWMGLNQTQTRKILAFSSISHLGWMTIITTYNPKLTLLTFYTY----TLMTTAIFLTMNT-- 221
Cdd:PRK12647 256 plwqTILPLFGGLTMLTGALLAVRQTDLKLILAYSTVSALGTLVMLLGLGSELAIKAAVLFlvahSLYKGALFMVAGIid 335

                        170       180       190       200
                 ....*....|....*....|....*....|....*....|....*..
gi 354992362 222 --TNTLKLPTLMTSWTKMPTLNTTLMLTLLSLAGLPPLTGFLPKWLI 266
Cdd:PRK12647 336 heTGTRDITKLGGLRRAMPITAAAALLAALSMAGLPPLFGFLAKELI 382
PRK06458 PRK06458
hydrogenase 4 subunit F; Validated
 7-192 4.61e-05

hydrogenase 4 subunit F; Validated


Pssm-ID: 235805 [Multi-domain]  Cd Length: 490  Bit Score: 44.92  E-value: 4.61e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 354992362   7 FISTMSLllgttiTITSNHWMMAWTGLEINTLAIIPHISKSHHPRAIEATTKYFLVQATASALMLFSS----------MI 76
Cdd:PRK06458 117 FLFTMLL------ALTSNNLGLMWVAIEATTLSSALLVGIYRTRASLEAAWKYIIICSVGVAFALFGTilvyanaatvMG 190

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 354992362  77 NAQLTGQWdiTQLTYPPSCL---LLTTAIAI-------KLGLAPFHFWFPDVLQGSPLttalllstlmklpPTTILL--- 143
Cdd:PRK06458 191 DGEMAILW--TELLKHASLLdptLMKLAFVFlligfgtKVGLFPMHAWLPDAHSEAPS-------------PVSALLsgv 255

                        170       180       190       200       210       220
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 354992362 144 --------------LTSHSLNP----TLLTTMSITSIALGGWMGLNQTQTRKILAFSSISHLGWMTI 192
Cdd:PRK06458 256 llnvalyavlryyiLIDAAIGSdfpgRLLLIFGLLSVLVAAFFLLRQRDIKRLFAYSSIEHMGLIAF 322
PRK12662 PRK12662
putative monovalent cation/H+ antiporter subunit D; Reviewed
 152-267 9.97e-05

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 183662 [Multi-domain]  Cd Length: 492  Bit Score: 43.95  E-value: 9.97e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 354992362 152 TLLTTMSITSIALGGWMGLNQTQTRKILAFSSISHLGWMTIITTYNPKLTLLTFYTY----TLMTTAIFLTMNTT----N 223
Cdd:PRK12662 280 NVFMILAALAIVFGSVLAILSKDIKRIFAYSSISHIGYIILAVSLNTYYGLAAAVAYivnhSIVKSALFMVSGSIsyhfG 359

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|....
gi 354992362 224 TLKLPTLMTSWTKMPTLNTTLMLTLLSLAGLPPLTGFLPKWLII 267
Cdd:PRK12662 360 TTKLEDCLNLWKSMPKITLAFVLLSLSLIGMPPTSGFVAKWYIL 403
PRK06277 PRK06277
energy conserving hydrogenase EhbF;
34-268 5.38e-04

energy conserving hydrogenase EhbF;


Pssm-ID: 235767 [Multi-domain]  Cd Length: 478  Bit Score: 41.56  E-value: 5.38e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 354992362  34 EINTLAIIPHISKSHHPRAIEATTKYFLVQATASALMLFSSMINAQLTGQWDITQLTY-----PPSCLLLTTAIAIKLGL 108
Cdd:PRK06277 130 EIAAIVQVGLVIASGTEEAYKAALKYMILGNVAGSILLLGIGFLLASTGTLNITDIHNallvnPTSPVIYGGLLLLIFGL 209

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 354992362 109 A------PFHFWFPDVLQGSPLTTALLLSTLMKLPPTTILL--------LTSHSLNPTLLTTMSITSIALGGWMGLNQTQ 174
Cdd:PRK06277 210 LygsglpPFHTIKSDIYAKAKPFGSALLQTFSKFVLVALMLvifklfggLSYFPSAQGVLIALSVLAMVFGVVMALLQTD 289

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 354992362 175 TRKILAFSSISHLGW----MTIITTYNPKLTLLTFYTYTLMTTAIFL-------TMNTTNTLKLPTLMTSwtkMPTLNTT 243
Cdd:PRK06277 290 YKRLLAYHAISQGGYvaagLALGTPLGIVAGIFHAINHVIYKSALFLgagivsyRTKTSNLRKLGGLLPV---MPVVAFM 366

                        250       260
                 ....*....|....*....|....*
gi 354992362 244 LMLTLLSLAGLPPLTGFLPKWLIIQ 268
Cdd:PRK06277 367 VLCAKLAISGVPPFNGFQSKLMLAQ 391
PRK12561 PRK12561
NAD(P)H-quinone oxidoreductase subunit 4; Provisional
 55-278 1.03e-03

NAD(P)H-quinone oxidoreductase subunit 4; Provisional


Pssm-ID: 237137 [Multi-domain]  Cd Length: 504  Bit Score: 40.79  E-value: 1.03e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 354992362  55 ATTKYFLVQATASALMLFSSMINAQLTGQ--WDITQLT---YPPSCLLLT-----TAIAIKLGLAPFHFWFPDVL-QGSP 123
Cdd:PRK12561 138 AATKFILYTALASIFILVAGLALALSGDTftFDLAELGaksYPLALELLLyagflIAFGVKLPIFPLHTWLPDAHgEASA 217

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 354992362 124 LTTALLLSTLMKLPPTTI------LLLTSHSLNPTLLTTMSITSIALGGWMGLNQTQTRKILAFSSISHLGWMTI----I 193
Cdd:PRK12561 218 PVSMILAGVLLKMGGYALirfnvqMLPDAHVYFAPALAILGVVNIIYGALNAFAQDNVKRRLAYSSVSHMGFVLLgiaaF 297

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 354992362 194 TTYNPKLTLLTFYTYTLMTTAIFL----TMNTTNTLKLPTLMTSWTKMPTLNTTLMLTLLSLAGLPPLTGFLPKWLIIQE 269
Cdd:PRK12561 298 TDLGISGAMLQMISHGLIAAALFFltgvTYERTHTLSIPNMGGLAKVMPKTFALFTASSMASLALPGMSGFVSELTVFLG 377


                 ....*....
gi 354992362 270 LTKQEMTTT 278
Cdd:PRK12561 378 ITSSDVYSS 386
PRK06589 PRK06589
putative monovalent cation/H+ antiporter subunit D; Reviewed
 2-282 1.13e-03

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 235835 [Multi-domain]  Cd Length: 489  Bit Score: 40.57  E-value: 1.13e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 354992362   2 NPLTKFISTMSLLLGTTITITSNHWMMaWTGLEINTLAIIPHISKSHHPRAIEATTKYFLVqATASALMLF--SSMINAQ 79
Cdd:PRK06589 115 SSRFLFFFNLTILIGVLIALSSDLFTM-FVCYELLTISTAFLIGHTRNNISLSGGYKYLKI-LMISALLLFlpAVILIYT 192

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 354992362  80 LTGQWDITQ---LTYPPSCLLLTTAIA--IKLGLAPFHFWFPDVLQGS-PLTTALLLSTLMK---LPPTTILLLTSHSLN 150
Cdd:PRK06589 193 KTGNLDFVSgglFSKNQSIILLLMFIYgiAKTAIFPVHSWLPAAMVAHyPVSALLHAVIVVKtglFCIYKILLYIFGLSY 272

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 354992362 151 PTLLTTMS-------ITSIALGGWMGLNQTQTRKILAFSSISHLGWMT----IITTYNPKLTLLTFYTYTLMTTAIFLTM 219
Cdd:PRK06589 273 LQRIFAEFnwlifipIVSIFYSSLKALKTDNIKKILAYSTISQLSLALlsafILTPKALGAAILHLVSHSFAKICLFYSM 352

                        250       260       270       280       290       300
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 354992362 220 NTTNTLK----LPTLMTSWTKMPTLNTTLMLTLLSLAGLPPLTGFLPKWLIIQELTKQEMTTTATII 282
Cdd:PRK06589 353 GSIYSLKkedqVDKLHGTSKSFPLISFIISISSLSLIGIPIFSGFISKFLILLAASEQNQPWLSIIV 419
PRK08667 PRK08667
hydrogenase membrane subunit; Validated
 59-270 1.32e-03

hydrogenase membrane subunit; Validated


Pssm-ID: 236331 [Multi-domain]  Cd Length: 644  Bit Score: 40.48  E-value: 1.32e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 354992362  59 YFLVQATASALMLFSSMINAQLTGQWDITQLTYPP-----SCLLLTTAIAIKLGLAPFHFWFPDVLQGSPLTTALLLSTL 133
Cdd:PRK08667 167 YFVMTQLSTVFLMLGIIVLFIQTGSFELSPLGASAgilslVFLLLFLGFGIKAGIIPFHKWLPYAHPASPSNVSALMSGV 246

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 354992362 134 M-KLPPTTILLLTSHSLNP-----TLLTTMSITSIALGGWMGLNQTQTRKILAFSSISHLG--------WMTIITTYNPK 199
Cdd:PRK08667 247 MlKVAVYGLVRFLMDVLSPelwwgVLILLAGSISALLGVIYALKEHDLKGLLAYSSIENIGiilmgiglYVIFGVYGLDT 326

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 354992362 200 LTLLTF-------YTYTLMTTAIFLTMNT----TNTLKLPTLMTSWTKMPTLNTTLMLTLLSLAGLPPLTGFLPKWLIIQ 268
Cdd:PRK08667 327 LALLALggalfhsLNHALFKSLLFLTAGSvvhaTGTRNIEKMGGLVKLMPYTSALFLVGAVSIAALPPFNGFASELLLYE 406


                 ..
gi 354992362 269 EL 270
Cdd:PRK08667 407 SF 408
PRK07363 PRK07363
NADH-quinone oxidoreductase subunit M;
96-268 3.01e-03

NADH-quinone oxidoreductase subunit M;


Pssm-ID: 180945 [Multi-domain]  Cd Length: 501  Bit Score: 39.31  E-value: 3.01e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 354992362  96 LLLTTAI----AIKLGLAPFHFWFPDV-LQGSPLTTALLLSTLMKLPPTTILLL-------TSHSLNPTLLTTMSITSIa 163
Cdd:PRK07363 205 LILLTGLllgfGIKIPLVPLHTWLPDAyTEASPAVAILLGGVLAKLGTYGLLRFglqlfpqTWSLVAPGLAIIGTISVI- 283

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 354992362 164 LGGWMGLNQTQTRKILAFSSISHLGWMTIITTYNPKLTLL----TFYTYTLMTTAIF-------LTMNTTNTLKLPTLMT 232
Cdd:PRK07363 284 YGALSAIAQKDIKRMVAYSSIGHMGYILVAAAAGTQLSLLgavaQMISHGLILALLFhlvgiveRKVGTRDLDVLNGLMN 363

                        170       180       190
                 ....*....|....*....|....*....|....*.
gi 354992362 233 SWTKMPTLNTTLMLTLLSLAGLPPLTGFLPKWLIIQ 268
Cdd:PRK07363 364 PIRGLPLTSALLVLAGMASAGIPGLVGFVAEFIVFQ 399
PRK06473 PRK06473
NADH-quinone oxidoreductase subunit M;
55-266 7.35e-03

NADH-quinone oxidoreductase subunit M;


Pssm-ID: 235810 [Multi-domain]  Cd Length: 500  Bit Score: 38.14  E-value: 7.35e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 354992362  55 ATTKYFLVQATASALMLFSSMINAQLTG--QWDITQL---TYPPSC-LLLTTAI----AIKLGLAPFHFWFPDV-LQGSP 123
Cdd:PRK06473 158 AATKFLLYTAISGILILVSFLGLVWLSGasSFDYEPLrshTLPLSTqLLLLAPIlvgfGIKIPLVPFHTWLPDAhVEAST 237

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 354992362 124 LTTALLLSTLMKLPPTTIL------LLTSHSLNPTLLTTMSITSIALGGWMGLNQTQTRKILAFSSISHLGWMTIITTYN 197
Cdd:PRK06473 238 PVSVLLAGVLLKLGTYGLLrfgvglFPEAWVYLAPWLATWAVVSVLYGASCAIAQKDMKKMVAYSSIGHMGYILLAAAAA 317

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 354992362 198 PKLTLLT----FYTYTLMTTAIFLTM-------NTTNTLKLPTLMTSWTKMPTLNTTLMLTLLSLAGLPPLTGFLPKWLI 266
Cdd:PRK06473 318 TPLSILAavfqMISHGLISALLFLLVgvvykktGSRDVDVLRGLLNPERGLPITGSLMILGVMASAGIPGMVGFIAEFLV 397
PRK07234 PRK07234
putative monovalent cation/H+ antiporter subunit D; Reviewed
 33-271 9.40e-03

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 235978 [Multi-domain]  Cd Length: 470  Bit Score: 37.62  E-value: 9.40e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 354992362  33 LEINTLAIIPHISKSHHPRAIEATTKYFLVQATASALMLFSSMINAQLTGQWDITQL-TYPPSCL-LLTTAIAIKLGLAP 110
Cdd:PRK07234 123 LEVLSIATFLLVAYPRTDRAIWVGLRYLFYSNVAMLFYLIGAVLVYQANGTFAFSGLaTADPEAFaLIALGLLVKGGIFV 202

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 354992362 111 FHFWFPDVLQGSPlttalllstlmklPPTTILL----------------LTSHSLNPtLLTTMSITSIALGGWMGLNQTQ 174
Cdd:PRK07234 203 SGLWLPLTHSEAE-------------PPVSALLsgvvvkagvfplvrcaLDVPGLDL-IVRIFGVGTALLGVLFALLEKD 268

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 354992362 175 TRKILAFSSISHLGWMTIITTYNPKLTLltfyTYTLMTTAIFL---TMNTTNTLKLPTLMT-SWTKMPtlnttLMLTLLS 250
Cdd:PRK07234 269 LKRMLAFSTISQLGFILAAPLVGGLYAL----AHGLVKSTLFLcagALPSRNFTELISQMLgIGKWIP-----LTMASFS 339

                        250       260
                 ....*....|....*....|.
gi 354992362 251 LAGLPPLTGFLPKWLIIQELT 271
Cdd:PRK07234 340 IAGFPLLAGFVSKVLTLKNLL 360
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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