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Conserved domains on  [gi|354860625|gb|EHF21071|]
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hypothetical protein EUBG_04010 [Escherichia coli O104:H4 str. C236-11]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
DUF1425 super family cl12345
Putative periplasmic lipoprotein; This bacterial family of proteins contains members described ...
 1-34 2.74e-04

Putative periplasmic lipoprotein; This bacterial family of proteins contains members described as putative lipoproteins, some are also known as YcfL. The function of this family is unknown. Family members have also been annotated as predicted periplasmic lipoproteins (COG5633), and appear to contain an N-terminal membrane lipoprotein lipid attachment side (pfam08139), which is not included in this alignment model.


The actual alignment was detected with superfamily member COG5633:

Pssm-ID: 472303  Cd Length: 128  Bit Score: 36.12  E-value: 2.74e-04
                         10        20        30
                 ....*....|....*....|....*....|....*
gi 354860625   1 MKRLIPVALLTALLAGCAHDSPC-VPVYDDQgRLV 34
Cdd:COG5633    1 MKKLLIALLAVLLLAGCSSSPTSgIPVNSQQ-PLV 34
 
Name Accession Description Interval E-value
YcfL COG5633
Uncharacterized conserved protein YcfL [Function unknown];
1-34 2.74e-04

Uncharacterized conserved protein YcfL [Function unknown];


Pssm-ID: 444360  Cd Length: 128  Bit Score: 36.12  E-value: 2.74e-04
                         10        20        30
                 ....*....|....*....|....*....|....*
gi 354860625   1 MKRLIPVALLTALLAGCAHDSPC-VPVYDDQgRLV 34
Cdd:COG5633    1 MKKLLIALLAVLLLAGCSSSPTSgIPVNSQQ-PLV 34
 
Name Accession Description Interval E-value
YcfL COG5633
Uncharacterized conserved protein YcfL [Function unknown];
1-34 2.74e-04

Uncharacterized conserved protein YcfL [Function unknown];


Pssm-ID: 444360  Cd Length: 128  Bit Score: 36.12  E-value: 2.74e-04
                         10        20        30
                 ....*....|....*....|....*....|....*
gi 354860625   1 MKRLIPVALLTALLAGCAHDSPC-VPVYDDQgRLV 34
Cdd:COG5633    1 MKKLLIALLAVLLLAGCSSSPTSgIPVNSQQ-PLV 34
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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