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Conserved domains on  [gi|354804861|gb|AER41344|]
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NADH dehydrogenase subunit III (mitochondrion) [Chaunoproctus ferreorostris]

Protein Classification

NADH dehydrogenase subunit 3( domain architecture ID 10009581)

NADH dehydrogenase subunit 3 is a core subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I) that couples the transfer of electrons from NADH to quinone with the translocation of protons across the membrane

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
ND3 MTH00136
NADH dehydrogenase subunit 3; Provisional
 1-116 6.03e-55

NADH dehydrogenase subunit 3; Provisional


:

Pssm-ID: 177194 [Multi-domain]  Cd Length: 116  Bit Score: 167.02  E-value: 6.03e-55
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 354804861   1 MNMILFMLTLSFTLSLLLTALNFWLAQMNPDPEKLSPYECGFDPLGSARLPFSIRFFLVAILFLLFDLEIALLLPLPWAI 80
Cdd:MTH00136   1 MNLITTILTITIALSLILAIVSFWLPQMTPDHEKLSPYECGFDPLGSARLPFSLRFFLVAILFLLFDLEIALLLPLPWGD 80

                         90       100       110
                 ....*....|....*....|....*....|....*.
gi 354804861  81 QLESPTSTLMWASFLLLLLTLGLIYEWIQGGLEWAE 116
Cdd:MTH00136  81 QLPSPLLTFFWATAVLILLTLGLIYEWLQGGLEWAE 116
 
Name Accession Description Interval E-value
ND3 MTH00136
NADH dehydrogenase subunit 3; Provisional
 1-116 6.03e-55

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 177194 [Multi-domain]  Cd Length: 116  Bit Score: 167.02  E-value: 6.03e-55
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 354804861   1 MNMILFMLTLSFTLSLLLTALNFWLAQMNPDPEKLSPYECGFDPLGSARLPFSIRFFLVAILFLLFDLEIALLLPLPWAI 80
Cdd:MTH00136   1 MNLITTILTITIALSLILAIVSFWLPQMTPDHEKLSPYECGFDPLGSARLPFSLRFFLVAILFLLFDLEIALLLPLPWGD 80

                         90       100       110
                 ....*....|....*....|....*....|....*.
gi 354804861  81 QLESPTSTLMWASFLLLLLTLGLIYEWIQGGLEWAE 116
Cdd:MTH00136  81 QLPSPLLTFFWATAVLILLTLGLIYEWLQGGLEWAE 116
Oxidored_q4 pfam00507
NADH-ubiquinone/plastoquinone oxidoreductase, chain 3;
20-113 3.87e-28

NADH-ubiquinone/plastoquinone oxidoreductase, chain 3;


Pssm-ID: 459838 [Multi-domain]  Cd Length: 94  Bit Score: 98.26  E-value: 3.87e-28
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 354804861   20 ALNFWLAQMNPDPEKLSPYECGFDPLGSARLPFSIRFFLVAILFLLFDLEIALLlpLPWAIQL-ESPTSTLMWASFLLLL 98
Cdd:pfam00507   2 LLSRLLGPKRPNPEKLSPYECGFDPVGDARLRFSVRFYLVAILFLIFDVEVVFL--FPWAVSFrELGWFGFVEMLIFIAI 79

                          90
                  ....*....|....*
gi 354804861   99 LTLGLIYEWIQGGLE 113
Cdd:pfam00507  80 LLVGLVYAWKKGALE 94
NuoA COG0838
NADH:ubiquinone oxidoreductase subunit 3 (chain A) [Energy production and conversion]; NADH: ...
 20-114 1.41e-22

NADH:ubiquinone oxidoreductase subunit 3 (chain A) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 3 (chain A) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440600 [Multi-domain]  Cd Length: 117  Bit Score: 84.79  E-value: 1.41e-22
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 354804861  20 ALNFWLAQMNPDPEKLSPYECGFDPLGSARLPFSIRFFLVAILFLLFDLEIALLlpLPWAIQL-ESPTSTLMWASFLLLL 98
Cdd:COG0838   24 LLSRLLGPKRPNPEKLSPYECGIEPVGDARIRFSVRYYLVALLFVIFDVEVVFL--FPWAVVFrELGWFGLIEMLVFIAI 101

                         90
                 ....*....|....*.
gi 354804861  99 LTLGLIYEWIQGGLEW 114
Cdd:COG0838  102 LLVGLIYAWKKGALEW 117
 
Name Accession Description Interval E-value
ND3 MTH00136
NADH dehydrogenase subunit 3; Provisional
 1-116 6.03e-55

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 177194 [Multi-domain]  Cd Length: 116  Bit Score: 167.02  E-value: 6.03e-55
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 354804861   1 MNMILFMLTLSFTLSLLLTALNFWLAQMNPDPEKLSPYECGFDPLGSARLPFSIRFFLVAILFLLFDLEIALLLPLPWAI 80
Cdd:MTH00136   1 MNLITTILTITIALSLILAIVSFWLPQMTPDHEKLSPYECGFDPLGSARLPFSLRFFLVAILFLLFDLEIALLLPLPWGD 80

                         90       100       110
                 ....*....|....*....|....*....|....*.
gi 354804861  81 QLESPTSTLMWASFLLLLLTLGLIYEWIQGGLEWAE 116
Cdd:MTH00136  81 QLPSPLLTFFWATAVLILLTLGLIYEWLQGGLEWAE 116
ND3 MTH00113
NADH dehydrogenase subunit 3; Provisional
 2-115 8.34e-51

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 177175 [Multi-domain]  Cd Length: 114  Bit Score: 156.19  E-value: 8.34e-51
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 354804861   2 NMILFMLTLSFTLSLLLTALNFWLAQMNPDPEKLSPYECGFDPLGSARLPFSIRFFLVAILFLLFDLEIALLLPLPWAIQ 81
Cdd:MTH00113   1 MNLISMLTISLALSTILTTLNFWLTQTKPDNEKLSPYECGFDPLGSARLPFSIRFFLVAILFLLFDLEIALLLPLPWAIN 80

                         90       100       110
                 ....*....|....*....|....*....|....
gi 354804861  82 LESPTSTLMWASFLLLLLTLGLIYEWIQGGLEWA 115
Cdd:MTH00113  81 LTTPTTTLTWATIILTLLTLGLIYEWLQGGLEWA 114
ND3 MTH00069
NADH dehydrogenase subunit 3; Provisional
 3-116 1.44e-50

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 177141 [Multi-domain]  Cd Length: 114  Bit Score: 155.54  E-value: 1.44e-50
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 354804861   3 MILFMLTLSFTLSLLLTALNFWLAQMNPDPEKLSPYECGFDPLGSARLPFSIRFFLVAILFLLFDLEIALLLPLPWAIQL 82
Cdd:MTH00069   1 LIMLMLLISTILSLILITISFWLPLNNPDSEKLSPYECGFDPLGSARLPFSIRFFLVAILFLLFDLEIALLLPTPWASQL 80

                         90       100       110
                 ....*....|....*....|....*....|....
gi 354804861  83 ESPTSTLMWASFLLLLLTLGLIYEWIQGGLEWAE 116
Cdd:MTH00069  81 NTPTNTLFWSTLILILLTLGLIYEWIQGGLEWAE 114
ND3 MTH00106
NADH dehydrogenase subunit 3; Provisional
 23-116 3.56e-41

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 177168 [Multi-domain]  Cd Length: 115  Bit Score: 131.99  E-value: 3.56e-41
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 354804861  23 FWLAQMNPDPEKLSPYECGFDPLGSARLPFSIRFFLVAILFLLFDLEIALLLPLPWAIQLESPTSTLMWASFLLLLLTLG 102
Cdd:MTH00106  22 FWLPQLNIYSEKASPYECGFDPMGSARLPFSMKFFLVAITFLLFDLEIALLLPLPWASQTNNLNTMLTMALLLISLLALS 101

                         90
                 ....*....|....
gi 354804861 103 LIYEWIQGGLEWAE 116
Cdd:MTH00106 102 LAYEWTQKGLEWTE 115
ND3 MTH00042
NADH dehydrogenase subunit 3; Validated
 1-116 9.72e-36

NADH dehydrogenase subunit 3; Validated


Pssm-ID: 177117 [Multi-domain]  Cd Length: 116  Bit Score: 118.16  E-value: 9.72e-36
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 354804861   1 MNMILFMLTLSFTLSLLLTALNFWLAQMNPDPEKLSPYECGFDPLGSARLPFSIRFFLVAILFLLFDLEIALLLPLPWAI 80
Cdd:MTH00042   1 MTNLIFFLLIILILTSLLLLAGHFLPSRSPDLEKSSPYECGFDPLNSARLPFSFRFFLVAILFLLFDLEIALLFPLPPAT 80

                         90       100       110
                 ....*....|....*....|....*....|....*.
gi 354804861  81 QLESPTSTLMWASFLLLLLTLGLIYEWIQGGLEWAE 116
Cdd:MTH00042  81 LITNPSTLLPISLIFLIILTIGLVYEWVNGGLEWAE 116
ND3 MTH00203
NADH dehydrogenase subunit 3; Provisional
 1-114 2.19e-33

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 214456 [Multi-domain]  Cd Length: 112  Bit Score: 112.30  E-value: 2.19e-33
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 354804861   1 MNMILFMLTLSFTLSLLLTALNFWLAQMNPDPEKLSPYECGFDPLGSARLPFSIRFFLVAILFLLFDLEIALLLPLPWAI 80
Cdd:MTH00203   1 MNLIMLFFLIALLLSLILLFIAFWLPKVNPDGEKLSPYECGFDPLGSARLPFSLQFFLVALSFLLFDLEIALLLPLPWSN 80

                         90       100       110
                 ....*....|....*....|....*....|....
gi 354804861  81 QLESPtsTLMWASFLLLLLTLGLIYEWIQGGLEW 114
Cdd:MTH00203  81 QLSSL--SLLLAFLFLILLTLGLIYEWLQGGLEW 112
Oxidored_q4 pfam00507
NADH-ubiquinone/plastoquinone oxidoreductase, chain 3;
20-113 3.87e-28

NADH-ubiquinone/plastoquinone oxidoreductase, chain 3;


Pssm-ID: 459838 [Multi-domain]  Cd Length: 94  Bit Score: 98.26  E-value: 3.87e-28
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 354804861   20 ALNFWLAQMNPDPEKLSPYECGFDPLGSARLPFSIRFFLVAILFLLFDLEIALLlpLPWAIQL-ESPTSTLMWASFLLLL 98
Cdd:pfam00507   2 LLSRLLGPKRPNPEKLSPYECGFDPVGDARLRFSVRFYLVAILFLIFDVEVVFL--FPWAVSFrELGWFGFVEMLIFIAI 79

                          90
                  ....*....|....*
gi 354804861   99 LTLGLIYEWIQGGLE 113
Cdd:pfam00507  80 LLVGLVYAWKKGALE 94
ND3 MTH00161
NADH dehydrogenase subunit 3; Provisional
 31-114 2.96e-24

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 177217 [Multi-domain]  Cd Length: 113  Bit Score: 89.07  E-value: 2.96e-24
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 354804861  31 DPEKLSPYECGFDPLGSARLPFSIRFFLVAILFLLFDLEIALLLPLPWAIQLESPTSTLMWASFLLLLLTLGLIYEWIQG 110
Cdd:MTH00161  30 DREKSSPFECGFDPKSSARLPFSLRFFLIAIIFLIFDVEIALLLPMIFIFKTSNMMSWLITSSFFILILLLGLYYEWNQG 109


                 ....
gi 354804861 111 GLEW 114
Cdd:MTH00161 110 ALEW 113
ND3 MTH00148
NADH dehydrogenase subunit 3; Provisional
 1-116 4.24e-24

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 214433 [Multi-domain]  Cd Length: 117  Bit Score: 88.76  E-value: 4.24e-24
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 354804861   1 MNMILFMLTLSFTLSLLLTALNFWLAQM-NPDPEKLSPYECGFDPLGSARLPFSIRFFLVAILFLLFDLEIALLLPLPWA 79
Cdd:MTH00148   1 MLSILLSLLFALILSPVLLLLGLVLSKRsYSDREKSSPFECGFDPISSARSPFSLRFFLLAILFLVFDVEIVLLFPVLQS 80

                         90       100       110
                 ....*....|....*....|....*....|....*..
gi 354804861  80 IQLESPTSTLMWASFLLLLLTLGLIYEWIQGGLEWAE 116
Cdd:MTH00148  81 LGSSFSVWSLTSLFIFLLILILGLFHEWNEGSLDWVS 117
NuoA COG0838
NADH:ubiquinone oxidoreductase subunit 3 (chain A) [Energy production and conversion]; NADH: ...
 20-114 1.41e-22

NADH:ubiquinone oxidoreductase subunit 3 (chain A) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 3 (chain A) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440600 [Multi-domain]  Cd Length: 117  Bit Score: 84.79  E-value: 1.41e-22
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 354804861  20 ALNFWLAQMNPDPEKLSPYECGFDPLGSARLPFSIRFFLVAILFLLFDLEIALLlpLPWAIQL-ESPTSTLMWASFLLLL 98
Cdd:COG0838   24 LLSRLLGPKRPNPEKLSPYECGIEPVGDARIRFSVRYYLVALLFVIFDVEVVFL--FPWAVVFrELGWFGLIEMLVFIAI 101

                         90
                 ....*....|....*.
gi 354804861  99 LTLGLIYEWIQGGLEW 114
Cdd:COG0838  102 LLVGLIYAWKKGALEW 117
ND3 MTH00202
NADH dehydrogenase subunit 3; Provisional
 1-116 8.61e-22

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 214455 [Multi-domain]  Cd Length: 117  Bit Score: 82.73  E-value: 8.61e-22
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 354804861   1 MNMILFMLTLSFTLSLLLTALNFWL-AQMNPDPEKLSPYECGFDPLGSARLPFSIRFFLVAILFLLFDLEIALLLPLPWA 79
Cdd:MTH00202   1 MLLILFMSILSILISSLLFLVSWMLsFRSLMDREKSSPFECGFDPKESARLPFSMRFFLLAVIFLVFDIEIALLLPLPLV 80

                         90       100       110
                 ....*....|....*....|....*....|....*..
gi 354804861  80 IQLESPTSTLMWASFLLLLLTLGLIYEWIQGGLEWAE 116
Cdd:MTH00202  81 LKSSWSKGGLLGGTIFLLILIGGLIHEWKEGSLDWVK 117
ND3 MTH00055
NADH dehydrogenase subunit 3; Provisional
 30-114 1.14e-21

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 177128 [Multi-domain]  Cd Length: 118  Bit Score: 82.45  E-value: 1.14e-21
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 354804861  30 PDPEKLSPYECGFDPLGSARLPFSIRFFLVAILFLLFDLEIALLlpLPWAIQLESPTSTLMWASFLLLLLTLG-LIYEWI 108
Cdd:MTH00055  34 PDSEKVSVYECGFDPFESSRIPFSVRFFLVGILFLIFDLEISFL--FPWCVVYNQIGLFGFWVMYLFLIILTIgLIYEWV 111


                 ....*.
gi 354804861 109 QGGLEW 114
Cdd:MTH00055 112 KGGLEW 117
PRK06602 PRK06602
NADH:ubiquinone oxidoreductase subunit A; Validated
 21-115 1.42e-21

NADH:ubiquinone oxidoreductase subunit A; Validated


Pssm-ID: 180638 [Multi-domain]  Cd Length: 121  Bit Score: 82.22  E-value: 1.42e-21
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 354804861  21 LNFWLAQMNPDPEKLSPYECGFDPLGSARLPFSIRFFLVAILFLLFDLEIALLlpLPWAIQLESptstLMWASFLLLLLT 100
Cdd:PRK06602  28 AGKLLGPRAPDREKNSPYESGFEAFGDARMKFDVRFYLVAILFVIFDLEAAFL--FPWAVSFRE----IGWLGFVEAMIF 101

                         90       100
                 ....*....|....*....|
gi 354804861 101 LG-----LIYEWIQGGLEWA 115
Cdd:PRK06602 102 ILvllvgLVYLWRKGALDWE 121
ND3 MTH00012
NADH dehydrogenase subunit 3; Validated
 1-115 8.80e-20

NADH dehydrogenase subunit 3; Validated


Pssm-ID: 164588 [Multi-domain]  Cd Length: 117  Bit Score: 77.59  E-value: 8.80e-20
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 354804861   1 MNMILFMLTLSFTLSLLLTALNFWLA-QMNPDPEKLSPYECGFDPLGSARLPFSIRFFLVAILFLLFDLEIALLLPLPWA 79
Cdd:MTH00012   1 MSLMMIPMMISLILPPLVLGAAWVLAaRSTADREKTSPFECGFDPHKTARIPFSLRFFLLAIIFIVFDIEIVLLMPVPTI 80

                         90       100       110
                 ....*....|....*....|....*....|....*.
gi 354804861  80 IQLESPTSTLMWASFLLLLLTLGLIYEWIQGGLEWA 115
Cdd:MTH00012  81 LMTSTSKTVVYTSILFLLILVIGLIHEWREGSLDWS 116
ND3 MTH00018
NADH dehydrogenase subunit 3; Validated
 21-114 1.21e-19

NADH dehydrogenase subunit 3; Validated


Pssm-ID: 164592 [Multi-domain]  Cd Length: 113  Bit Score: 77.41  E-value: 1.21e-19
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 354804861  21 LNFWLAQMNPDPEKLSPYECGFDPLGSARLPFSIRFFLVAILFLLFDLEIALLlpLPWAIQLESPTSTLMWASFLLLLLT 100
Cdd:MTH00018  20 ASYFLGVKQPDREKVSAYECGFDPFGFPGRPFSIRFFLIGILFLIFDLEISFL--FPWCVLYNQIAPFGFWTMVGFLFIL 97

                         90
                 ....*....|....*
gi 354804861 101 LG-LIYEWIQGGLEW 114
Cdd:MTH00018  98 TLgLIYEWIKGGLEW 112
ND3 MTH00030
NADH dehydrogenase subunit 3; Provisional
 30-114 1.05e-16

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 164603 [Multi-domain]  Cd Length: 123  Bit Score: 69.96  E-value: 1.05e-16
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 354804861  30 PDPEKLSPYECGFDPLGSARLPFSIRFFLVAILFLLFDLEIALLlpLPWAIQLESPTSTLMWASFLLLLLTLGLI-YEWI 108
Cdd:MTH00030  39 PDSEKSSIYECGFDPFGKIRTPFTIKFVLVGILFMIFDIEISFL--FPWSIVFNQLNLFSFWIVYTFLIVLAIGLaYEWI 116


                 ....*.
gi 354804861 109 QGGLEW 114
Cdd:MTH00030 117 KGGLEW 122
PRK07928 PRK07928
NADH dehydrogenase subunit A; Validated
 34-114 1.80e-10

NADH dehydrogenase subunit A; Validated


Pssm-ID: 181171 [Multi-domain]  Cd Length: 119  Bit Score: 53.91  E-value: 1.80e-10
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 354804861  34 KLSPYECGFDPLGSARLP--FSIRFFLVAILFLLFDLEIALLLPlpWAIQLES-PTSTLMWASFLLLLLTLGLIYEWIQG 110
Cdd:PRK07928  37 KLEAYECGIEPTPQPAGGgrFPVKYYLTAMLFIVFDIEIVFLYP--WAVSFDAlGVFGLVEMALFMLTVFVAYAYVWRRG 114


                 ....
gi 354804861 111 GLEW 114
Cdd:PRK07928 115 GLEW 118
ndhC CHL00022
NADH dehydrogenase subunit 3
 24-114 2.62e-10

NADH dehydrogenase subunit 3


Pssm-ID: 176964 [Multi-domain]  Cd Length: 120  Bit Score: 53.45  E-value: 2.62e-10
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 354804861  24 WLAQMNPDPEKLSPYECGFDPLGSARLPFSIRFFLVAILFLLFDLEIALLlpLPWAIQLES-PTSTLMWASFLLLLLTLG 102
Cdd:CHL00022  30 LLAPISKGPEKLSSYESGIEPMGDAWLQFRIRYYMFALVFVVFDVETVFL--YPWAMSFDVlGVSAFIEALIFVLILIVG 107

                         90
                 ....*....|..
gi 354804861 103 LIYEWIQGGLEW 114
Cdd:CHL00022 108 LVYAWRKGALEW 119
PRK08489 PRK08489
NAD(P)H-quinone oxidoreductase subunit 3;
25-114 7.84e-07

NAD(P)H-quinone oxidoreductase subunit 3;


Pssm-ID: 181448 [Multi-domain]  Cd Length: 129  Bit Score: 44.66  E-value: 7.84e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 354804861  25 LAQMNPDPEKLSPYECGFDPLGSARlPFSIRFFLVAILFLLFDLEIALLlpLPWAIQLEsptsTLMWASFLLLLLTLGL- 103
Cdd:PRK08489  38 LAQKNTEKLKLAIYECGPEPVKQPN-RISSHFYIMALLFILFDVEIVFM--FPWAVDFK----LLGLFGLIEMLLFIVLl 110

                         90
                 ....*....|....*
gi 354804861 104 ----IYEWIQGGLEW 114
Cdd:PRK08489 111 tigfIYAWKKGALEW 125
ND3 MTH00092
NADH dehydrogenase subunit 3; Provisional
 21-74 2.75e-06

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 177155  Cd Length: 111  Bit Score: 42.57  E-value: 2.75e-06
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|....
gi 354804861  21 LNFWLAQMNPDPEKLSPYECGFDPLGSARLPFSIRFFLVAILFLLFDLEIALLL 74
Cdd:MTH00092  21 LNFFLSVKKFDLLKVSSFECGFESVGKIQNSFSIHFFKIMLMFVIFDLEIVMFL 74
PRK07756 PRK07756
NADH-quinone oxidoreductase subunit A;
24-114 3.07e-06

NADH-quinone oxidoreductase subunit A;


Pssm-ID: 169084 [Multi-domain]  Cd Length: 122  Bit Score: 42.81  E-value: 3.07e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 354804861  24 WLAQMNPDPEKLSPYECGFDPLGSARLPFSIRFFLVAILFLLFDLEIALLLPlpWAIQLES-PTSTLMWASFLLLLLTLG 102
Cdd:PRK07756  32 MLRPNKPSAAKATTYESGIEPFHDANIRFHARYYIFALLFVIFDVETLFLYP--WAVAYDKlGLFALIEMLIFVVMLLVG 109

                         90
                 ....*....|..
gi 354804861 103 LIYEWIQGGLEW 114
Cdd:PRK07756 110 LAYAWKKKVLQW 121
ND3 MTH00060
NADH dehydrogenase subunit 3; Provisional
 36-77 1.44e-04

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 177132  Cd Length: 116  Bit Score: 38.34  E-value: 1.44e-04
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|..
gi 354804861  36 SPYECGFDPLGSARLPFSIRFFLVAILFLLFDLEIALLLPLP 77
Cdd:MTH00060  39 SSFECGFFSSGLSENCFSFTYFFLLVFFVIFDLEISLLLNMP 80
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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