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Conserved domains on  [gi|354804677|gb|AER41251|]
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NADH dehydrogenase subunit II (mitochondrion) [Chaunoproctus ferreorostris]

Protein Classification

NADH dehydrogenase subunit 2( domain architecture ID 11475904)

NADH dehydrogenase subunit 2 is the core subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I), which functions in the transfer of electrons from NADH to the respiratory chain

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
ND2 MTH00112
NADH dehydrogenase subunit 2; Provisional
 1-346 3.84e-164

NADH dehydrogenase subunit 2; Provisional


:

Pssm-ID: 214423 [Multi-domain]  Cd Length: 346  Bit Score: 461.60  E-value: 3.84e-164
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 354804677   1 MNPQAKLIFMTSLLLGTAMPMSSNHWIMAWAGLEINTLAILPLISKSHHPRSIEAATKYFLTQSAASALVLFSSMTNAWH 80
Cdd:MTH00112   1 MNPHAKLIITTSLILGTIITISSNHWLMAWTGLEINTLAIIPLISKPHHPRATEAATKYFLTQAAASALILFSSTTNAWN 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 354804677  81 TGQWDITQLSHPTSGLILTSAIAMKLGLVPFHFWFPEVLQGSPLSTGLLLSTIMKLPPMTLLYMTSPSLNPTLLTTLSIL 160
Cdd:MTH00112  81 TGQWDITQLTNPTSCTLLTLALAMKLGLAPFHFWLPEVLQGSTTTTALILSTWQKLAPLTLLLMTSNSLNPTLLLTLAIL 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 354804677 161 SVALGGWMGLNQTQIRKILAFSSISHLGWMAIIIIYNPKLTLLNFYLYTMMTAAVFLTLNSIKVLKLSTLMTAWTKMPSL 240
Cdd:MTH00112 161 STLIGGWGGLNQTQLRKIMAFSSIAHLGWMIAIITYSPKLTLLTFYIYILMTTPMFLTLNTTSTKTLKDMMTSWTKSPTL 240

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 354804677 241 NAMLLLTLLSLAGLPPLTGFLPKWLIIQELTKQEMIPAATLISLLSLLSLFFYLRLAYCTTITLPPHTTNHMKQWRTGKP 320
Cdd:MTH00112 241 NTTLMLTLLSLAGLPPLTGFMPKWLILQELTKQNMTPTATIMAMLSLLSLFFYLRLTYISTITLPPNTTNMMMKWRTKPK 320

                        330       340
                 ....*....|....*....|....*.
gi 354804677 321 VNILVAILTTLSVTLLPISPMILTIV 346
Cdd:MTH00112 321 KNTLTATLTTLSTLLLPLSPMILTII 346
 
Name Accession Description Interval E-value
ND2 MTH00112
NADH dehydrogenase subunit 2; Provisional
 1-346 3.84e-164

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214423 [Multi-domain]  Cd Length: 346  Bit Score: 461.60  E-value: 3.84e-164
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 354804677   1 MNPQAKLIFMTSLLLGTAMPMSSNHWIMAWAGLEINTLAILPLISKSHHPRSIEAATKYFLTQSAASALVLFSSMTNAWH 80
Cdd:MTH00112   1 MNPHAKLIITTSLILGTIITISSNHWLMAWTGLEINTLAIIPLISKPHHPRATEAATKYFLTQAAASALILFSSTTNAWN 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 354804677  81 TGQWDITQLSHPTSGLILTSAIAMKLGLVPFHFWFPEVLQGSPLSTGLLLSTIMKLPPMTLLYMTSPSLNPTLLTTLSIL 160
Cdd:MTH00112  81 TGQWDITQLTNPTSCTLLTLALAMKLGLAPFHFWLPEVLQGSTTTTALILSTWQKLAPLTLLLMTSNSLNPTLLLTLAIL 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 354804677 161 SVALGGWMGLNQTQIRKILAFSSISHLGWMAIIIIYNPKLTLLNFYLYTMMTAAVFLTLNSIKVLKLSTLMTAWTKMPSL 240
Cdd:MTH00112 161 STLIGGWGGLNQTQLRKIMAFSSIAHLGWMIAIITYSPKLTLLTFYIYILMTTPMFLTLNTTSTKTLKDMMTSWTKSPTL 240

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 354804677 241 NAMLLLTLLSLAGLPPLTGFLPKWLIIQELTKQEMIPAATLISLLSLLSLFFYLRLAYCTTITLPPHTTNHMKQWRTGKP 320
Cdd:MTH00112 241 NTTLMLTLLSLAGLPPLTGFMPKWLILQELTKQNMTPTATIMAMLSLLSLFFYLRLTYISTITLPPNTTNMMMKWRTKPK 320

                        330       340
                 ....*....|....*....|....*.
gi 354804677 321 VNILVAILTTLSVTLLPISPMILTIV 346
Cdd:MTH00112 321 KNTLTATLTTLSTLLLPLSPMILTII 346
Proton_antipo_M pfam00361
Proton-conducting membrane transporter; This is a family of membrane transporters that ...
 23-268 6.73e-26

Proton-conducting membrane transporter; This is a family of membrane transporters that inlcudes some 7 of potentially 14-16 TM regions. In many instances the family forms part of complex I that catalyzes the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane, and in this context is a combination predominantly of subunits 2, 4, 5, 14, L, M and N. In many bacterial species these proteins are probable stand-alone transporters not coupled with oxidoreduction. The family in total represents homologs across the phyla.


Pssm-ID: 425636 [Multi-domain]  Cd Length: 291  Bit Score: 104.70  E-value: 6.73e-26
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 354804677   23 SNHWIMAWAGLEINTLAILPLI-SKSHHPRSIEAATKYFLTQSAASALVLFSSMTNAWHTGQWDITQLSHPT-------- 93
Cdd:pfam00361   1 ANDLLLMYLGWEAVLLPSYLLIgYWGKSPRSSEAGMKYFLLTLLGSSILLFGISLMYNYTGTLSFDELSKALtgglnssg 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 354804677   94 ---SGLILTSAIAMKLGLVPFHFWFPEVLQGSPLSTGLLLSTIM-KLPPMTLLYMTSPSLNPT-----LLTTLSILSVAL 164
Cdd:pfam00361  81 lllLFLLILVGFLFKSAQVPFHTWLPDAYEGAPTPVSALLAATLvKAGGYGLIRRSLLYLPSSpfiqqILLILAIISMLL 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 354804677  165 GGWMGLNQTQIRKILAFSSISHLGWMAIII----IYNPKLTLLNFYLYTMMTAAVFLTLNSI-----KVLKLSTLMTAWT 235
Cdd:pfam00361 161 GSLAALVQTDIKRLLAYSSISHMGYMLIALgagtIYGIQAAIFHLLTHGLFSAGLFLCAGSViyrrvHTRNIRDYGGLAK 240

                         250       260       270
                  ....*....|....*....|....*....|...
gi 354804677  236 KMPSLNAMLLLTLLSLAGLPPLTGFLPKWLIIQ 268
Cdd:pfam00361 241 TMPILALVFLVAMLSLAGLPPTAGFLGKFLILA 273
NuoN COG1007
NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH: ...
 14-298 8.72e-26

NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 2 (chain N) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440631 [Multi-domain]  Cd Length: 473  Bit Score: 107.12  E-value: 8.72e-26
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 354804677  14 LLGTAMPMSSNHWIMAWAGLEINTLAILPLIS-KSHHPRSIEAATKYFLTQSAASALVLF-SSMTNAWhTGQWDITQLSH 91
Cdd:COG1007  112 TLGMMLMASANDLLTLFLGLELLSLSLYVLVAfRRDDRRSSEAALKYFLLGALSSGFLLYgISLLYGA-TGSLNLAGIAA 190

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 354804677  92 PTS-----------GLILT-SAIAMKLGLVPFHFWFPEVLQGSPLSTGLLLSTIMKL----PPMTLLYMTSPSLNP---T 152
Cdd:COG1007  191 ALAagganspllllGLVLVlAGLAFKLSAVPFHMWTPDVYEGAPTPVTAFLATAPKIaafaALLRLLVEAFPGLAAdwqL 270

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 354804677 153 LLTTLSILSVALGGWMGLNQTQIRKILAFSSISHLGWMAIIIIYNPKLTL--LNFYL--YTMMTAAVFLTLNSIK----- 223
Cdd:COG1007  271 LLAVLAVLSMTVGNLAALAQTNVKRMLAYSSIAHAGYLLLGLAAGTPLGVsaALFYLlaYLFMNLGAFAVILLLSrkgge 350

                        250       260       270       280       290       300       310
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 354804677 224 VLKLSTLMTAWTKMPSLNAMLLLTLLSLAGLPPLTGFLPKWLIIQELTKQEMIPAATLISLLSLLSLFFYLRLAY 298
Cdd:COG1007  351 AEEIEDLAGLARRSPLLALAMTIFLLSLAGIPPTAGFFGKFYVFSAAVEAGLYWLAVIAVLNSVISAYYYLRVVK 425
NDH_I_N TIGR01770
proton-translocating NADH-quinone oxidoreductase, chain N; This model describes the 14th ...
 14-297 6.17e-22

proton-translocating NADH-quinone oxidoreductase, chain N; This model describes the 14th (based on E. coli) structural gene, N, of bacterial and chloroplast energy-transducing NADH (or NADPH) dehydrogenases. This model does not describe any subunit of the mitochondrial complex I (for which the subunit composition is very different), nor NADH dehydrogenases that are not coupled to ion transport. The Enzyme Commission designation 1.6.5.3, for NADH dehydrogenase (ubiquinone), is applied broadly, perhaps unfortunately, even if the quinone is menaquinone (Thermus, Mycobacterium) or plastoquinone (chloroplast). For chloroplast members, the name NADH-plastoquinone oxidoreductase is used for the complex and this protein is designated as subunit 2 or B. This model also includes a subunit of a related complex in the archaeal methanogen, Methanosarcina mazei, in which F420H2 replaces NADH and 2-hydroxyphenazine replaces the quinone. [Energy metabolism, Electron transport]


Pssm-ID: 273795 [Multi-domain]  Cd Length: 468  Bit Score: 96.17  E-value: 6.17e-22
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 354804677   14 LLGTAMPMSSNHWIMAWAGLEINTLAILPLIS-KSHHPRSIEAATKYFLTQSAASALVLFSSMTNAWHTGQWDITQLSHP 92
Cdd:TIGR01770 112 LLGIFLLVSSNDLLSIYLGLELQSLCFYVLAGlKRKSRFSTEAGLKYFILGAFSSGLLLFGISLIYGFTGSLNFEDLLLF 191

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 354804677   93 TSGLILT------------SAIAMKLGLVPFHFWFPEVLQGSPLSTGLLLSTIMKLP---PMTLLYMTSPS----LNPTL 153
Cdd:TIGR01770 192 LSNGMLNisllllgivlilVGLLFKLSAVPFHMWVPDVYEGAPTPVTAFFSIVPKIAifaVFLRLFLYILFgfseAWQIF 271

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 354804677  154 LTTLSILSVALGGWMGLNQTQIRKILAFSSISHLGWMAIIIIYNPKLTLLN--FYL--YTMMTAAVFLTLNSIKVLK--- 226
Cdd:TIGR01770 272 LAIIAFLSMLIGNFGALAQKKVKRLLAYSSISHVGYILIGLLAGTLEGIKAvlFYIfiYALMSLGAFGVLSLLRSYKdew 351

                         250       260       270       280       290       300       310
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 354804677  227 ---LSTLMTAWTKMPSLNAMLLLTLLSLAGLPPLTGFLPKWLIIQELTKQEMIPAATLISLLSLLSLFFYLRLA 297
Cdd:TIGR01770 352 ieyISDFAGLFKTNPILAILILIFMFSLAGIPPLAGFFGKFYVFFALLKSGLYWLAVIAVLTSVIGAFYYLRVV 425
 
Name Accession Description Interval E-value
ND2 MTH00112
NADH dehydrogenase subunit 2; Provisional
 1-346 3.84e-164

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214423 [Multi-domain]  Cd Length: 346  Bit Score: 461.60  E-value: 3.84e-164
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 354804677   1 MNPQAKLIFMTSLLLGTAMPMSSNHWIMAWAGLEINTLAILPLISKSHHPRSIEAATKYFLTQSAASALVLFSSMTNAWH 80
Cdd:MTH00112   1 MNPHAKLIITTSLILGTIITISSNHWLMAWTGLEINTLAIIPLISKPHHPRATEAATKYFLTQAAASALILFSSTTNAWN 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 354804677  81 TGQWDITQLSHPTSGLILTSAIAMKLGLVPFHFWFPEVLQGSPLSTGLLLSTIMKLPPMTLLYMTSPSLNPTLLTTLSIL 160
Cdd:MTH00112  81 TGQWDITQLTNPTSCTLLTLALAMKLGLAPFHFWLPEVLQGSTTTTALILSTWQKLAPLTLLLMTSNSLNPTLLLTLAIL 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 354804677 161 SVALGGWMGLNQTQIRKILAFSSISHLGWMAIIIIYNPKLTLLNFYLYTMMTAAVFLTLNSIKVLKLSTLMTAWTKMPSL 240
Cdd:MTH00112 161 STLIGGWGGLNQTQLRKIMAFSSIAHLGWMIAIITYSPKLTLLTFYIYILMTTPMFLTLNTTSTKTLKDMMTSWTKSPTL 240

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 354804677 241 NAMLLLTLLSLAGLPPLTGFLPKWLIIQELTKQEMIPAATLISLLSLLSLFFYLRLAYCTTITLPPHTTNHMKQWRTGKP 320
Cdd:MTH00112 241 NTTLMLTLLSLAGLPPLTGFMPKWLILQELTKQNMTPTATIMAMLSLLSLFFYLRLTYISTITLPPNTTNMMMKWRTKPK 320

                        330       340
                 ....*....|....*....|....*.
gi 354804677 321 VNILVAILTTLSVTLLPISPMILTIV 346
Cdd:MTH00112 321 KNTLTATLTTLSTLLLPLSPMILTII 346
ND2 MTH00135
NADH dehydrogenase subunit 2; Provisional
 1-346 9.00e-134

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177193 [Multi-domain]  Cd Length: 347  Bit Score: 384.93  E-value: 9.00e-134
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 354804677   1 MNPQAKLIFMTSLLLGTAMPMSSNHWIMAWAGLEINTLAILPLISKSHHPRSIEAATKYFLTQSAASALVLFSSMTNAWH 80
Cdd:MTH00135   1 MNPYVLTILLFSLGLGTTLTFASSHWLLAWMGLEINTLAIIPLMAQHHHPRAVEATTKYFLTQATAAAMILFASTTNAWL 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 354804677  81 TGQWDITQLSHPTSGLILTSAIAMKLGLVPFHFWFPEVLQGSPLSTGLLLSTIMKLPPMTLLYMTSPSlNPTLLTTLSIL 160
Cdd:MTH00135  81 TGQWDIQQMSHPLPTTMITLALALKIGLAPLHFWLPEVLQGLDLTTGLILSTWQKLAPFALILQIAPT-NPTLLITLGLT 159

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 354804677 161 SVALGGWMGLNQTQIRKILAFSSISHLGWMAIIIIYNPKLTLLNFYLYTMMTAAVFLTLNSIKVLKLSTLMTAWTKMPSL 240
Cdd:MTH00135 160 STLVGGWGGLNQTQLRKILAYSSIAHLGWMILVLQFSPSLTLLALLTYIIMTSSAFLTFKLNSSTKINTLATSWTKAPAL 239

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 354804677 241 NAMLLLTLLSLAGLPPLTGFLPKWLIIQELTKQEMIPAATLISLLSLLSLFFYLRLAYCTTITLPPHTTNHMKQWRTGKP 320
Cdd:MTH00135 240 TALTPLILLSLGGLPPLTGFMPKWLILQELTKQDLPLTATLAALSALLSLYFYLRLSYAMTLTISPNTLNGTTPWRLPST 319

                        330       340
                 ....*....|....*....|....*..
gi 354804677 321 VNIL-VAILTTLSVTLLPISPMILTIV 346
Cdd:MTH00135 320 QLTLpLAISTTATLMLLPLTPAILALL 346
ND2 MTH00070
NADH dehydrogenase subunit 2; Provisional
 1-345 5.31e-132

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177142 [Multi-domain]  Cd Length: 346  Bit Score: 380.42  E-value: 5.31e-132
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 354804677   1 MNPQAKLIFMTSLLLGTAMPMSSNHWIMAWAGLEINTLAILPLISKSHHPRSIEAATKYFLTQSAASALVLFSSMTNAWH 80
Cdd:MTH00070   1 MSPYALSILLSSLALGTMITLSSNHWFLAWMGLEINTLAIIPLMTKTHHPRATEAATKYFLTQASASALILFSSTINAWF 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 354804677  81 TGQWDITQLSHPTSGLILTSAIAMKLGLVPFHFWFPEVLQGSPLSTGLLLSTIMKLPPMTLLYMTSPSLNPTLLTTLSIL 160
Cdd:MTH00070  81 TGEWTIMNMQTPLPTIMLTIALMMKLGIAPFHFWLPEVLQGLDLTTGLILSTWQKLAPMALLIQISHLLNSNLLIIMGLL 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 354804677 161 SVALGGWMGLNQTQIRKILAFSSISHLGWMAIIIIYNPKLTLLNFYLYTMMTAAVFLTLNSIKVLKLSTLMTAWTKMPSL 240
Cdd:MTH00070 161 STLIGGWGGLNQTQLRKIMAYSSIAHLGWMIIILTFSPHLTLLNLLIYLIMTSSMFLMLMNLNSTNINKLSSSWSKNPTL 240

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 354804677 241 NAMLLLTLLSLAGLPPLTGFLPKWLIIQELTKQEMIPAATLISLLSLLSLFFYLRLAYCTTITLPPHTTNHMKQWRTGKP 320
Cdd:MTH00070 241 TSMMMLTLLSLGGLPPTTGFIPKWLILQELTKQNLTTLATLMALSALLSLFFYLRLSYAMSLTTSPNTSNSKLYWRFKNK 320

                        330       340
                 ....*....|....*....|....*
gi 354804677 321 VNILVAILTTLSVTLLPISPMILTI 345
Cdd:MTH00070 321 TNNLLSLTIILSLMLLPITPTILNL 345
ND2 MTH00105
NADH dehydrogenase subunit 2; Provisional
 1-345 5.91e-118

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177167 [Multi-domain]  Cd Length: 347  Bit Score: 344.52  E-value: 5.91e-118
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 354804677   1 MNPQAKLIFMTSLLLGTAMPMSSNHWIMAWAGLEINTLAILPLISKSHHPRSIEAATKYFLTQSAASALVLFSSMTNAWH 80
Cdd:MTH00105   1 MNPLILIIIYLTLFLGTMITMISSHWLLAWIGLEMNMLAIIPILMKKHNPRSTEAATKYFLTQATASMLLMMAIIINLMY 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 354804677  81 TGQWDITQLSHPTSGLILTSAIAMKLGLVPFHFWFPEVLQGSPLSTGLLLSTIMKLPPMTLLYMTSPSLNPTLLTTLSIL 160
Cdd:MTH00105  81 SGQWTITKLTNPTASTLMTIALAMKLGLAPFHFWVPEVTQGIPLSSGMILLTWQKLAPLSILYQISPSINPNLLLTLAIL 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 354804677 161 SVALGGWMGLNQTQIRKILAFSSISHLGWMAIIIIYNPKLTLLNFYLYTMMTAAVFLTLNSIKVLKLSTLMTAWTKMPSL 240
Cdd:MTH00105 161 SILIGGWGGLNQTQLRKILAYSSIAHMGWMTAILPYNPTLTLLNLLIYIIMTLTMFMLLMLNSSTTTLSLSHTWNKTPLM 240

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 354804677 241 NAMLLLTLLSLAGLPPLTGFLPKWLIIQELTKQEMIPAATLISLLSLLSLFFYLRLAYCTTITLPPhTTNHMK---QWRT 317
Cdd:MTH00105 241 TSLILLTLLSLGGLPPLTGFMPKWMIIQELTKNNNIILPTLMAITALLNLYFYMRLIYSTSLTMFP-STNNMKmkwQFEN 319

                        330       340
                 ....*....|....*....|....*...
gi 354804677 318 GKPvNILVAILTTLSVTLLPISPMILTI 345
Cdd:MTH00105 320 TKP-MTLLPTLIILSTMLLPLTPMLSIL 346
ND2 MTH00200
NADH dehydrogenase subunit 2; Provisional
 1-345 1.73e-96

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177246 [Multi-domain]  Cd Length: 347  Bit Score: 289.95  E-value: 1.73e-96
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 354804677   1 MNPQAKLIFMTSLLLGTAMPMSSNHWIMAWAGLEINTLAILPLISKSHHPRSIEAATKYFLTQSAASALVLFSSMTNAWH 80
Cdd:MTH00200   1 MSPLILPLFILSLGLGTLLTFSSSHWFLIWLGLEINTLAIIPLLIKQHHPRKVEATTKYFIIQATASALLLFGGLLNAWT 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 354804677  81 TGQWDITQLSHPTSGLILTSAIAMKLGLVPFHFWFPEVLQGSPLSTGLLLSTIMKLPPMTLLYMTSPSLNPTLLTTLSIL 160
Cdd:MTH00200  81 SGQWGISEMLGPLSETLILLALALKLGLAPGHFWVPDVLQGLSLQTGLILSTWQKLAPFALLIQLAPALNSNILLLLGLL 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 354804677 161 SVALGGWMGLNQTQIRKILAFSSISHLGWMAIIIIYNPKLTLLNFYLYTMMTAAVFLTLNSIKVLKLSTLMTAWTKMPSL 240
Cdd:MTH00200 161 SVLVGGWGGLNQTQLRKILAYSSIAHLGWLLSGLVYSPNLALLYLLLYVIITLTVFLLLNLLNSTKINSLSSSKTKNPIL 240

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 354804677 241 NAMLLLTLLSLAGLPPLTGFLPKWLIIQELTKQEMIPAATLISLLSLLSLFFYLRLAYCTTITLPPHTTNHMKQWRTGKP 320
Cdd:MTH00200 241 SMLLGLTLLSLGGLPPLTGFFPKWLILQELSKQGLFIYATILLLGSLLSLFFYLRLSYLTLLTLSPNQINMMSSWRTKSN 320

                        330       340
                 ....*....|....*....|....*
gi 354804677 321 VNILVAILTTLSVTLLPISPMILTI 345
Cdd:MTH00200 321 SNLLVGLLLLLSILGLPLTPQLLFL 345
ND2 MTH00041
NADH dehydrogenase subunit 2; Validated
 1-336 3.29e-79

NADH dehydrogenase subunit 2; Validated


Pssm-ID: 177116 [Multi-domain]  Cd Length: 349  Bit Score: 246.00  E-value: 3.29e-79
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 354804677   1 MNPQAKLIFMTSLLLGTAMPMSSNHWIMAWAGLEINTLAILPLISKSHHPRSIEAATKYFLTQSAASALVLFSSMTNAWH 80
Cdd:MTH00041   1 MNRNVLIFLITSIILGTIIVISSNHWFLIWLGLELNTLSIIPILSSNFSPRSVEATIKYFLVQAFSAAILLNGALIQAWL 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 354804677  81 TGQWDITQLSHPTSGLILTSAIAMKLGLVPFHFWFPEVLQGSPLSTGLLLSTIMKLPPMTLLYMTSPSLNPTLLTTLSIL 160
Cdd:MTH00041  81 SGSWSINGPLNTLSSIIITLALALKLGLAPCHFWFPDVLQGLPFLQGLIIATWQKIAPLILLISISNLLNSNILILCGIL 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 354804677 161 SVALGGWMGLNQTQIRKILAFSSISHLGWMAIIIIYNPKLTLLNFYLYTMMTAAVFLTLNSIKVLKLSTLMTAWTKMPSL 240
Cdd:MTH00041 161 SVLVGGWGGLNQTQTRKILAFSSIAHLGWIIITSAYSPNASIIMFLIYIIINTSIFLIGNNFSLSTLSHLNKLSQLNPIS 240

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 354804677 241 NAMLLLTLLSLAGLPPLTGFLPKWLIIQELTKQEMIPAATLISLLSLLSLFFYLRLAYCTTITLPPHTTNHMKQWRTGKP 320
Cdd:MTH00041 241 AFLFILSILSLGGLPPLTGFLNKFISLYCLIQNNSILISIILIIGSLLSLFFYLRISFNTSLTLFPQHSISLFSWRNSGN 320

                        330
                 ....*....|....*.
gi 354804677 321 VNILVAILTTLSVTLL 336
Cdd:MTH00041 321 ITVYGVILSILSSISI 336
ND2 MTH00160
NADH dehydrogenase subunit 2; Provisional
 1-345 5.73e-55

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214442 [Multi-domain]  Cd Length: 335  Bit Score: 182.72  E-value: 5.73e-55
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 354804677   1 MNPQAKLIFMTSLLLGTAMPMSSNHWIMAWAGLEINTLAILPLISKSHHPRSIEAATKYFLTQSAASALVLFSSMTNAWh 80
Cdd:MTH00160   2 MMNSSKLLFLSTLIMGTLISISSNSWFGAWMGLEINLLSFIPLISNKKNLMSSESSLKYFLIQALASIILLFSIILNML- 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 354804677  81 tgqwdITQLSHPTSGLILTSAIAMKLGLVPFHFWFPEVLQGSPLSTGLLLSTIMKLPPMTLLYMTspsLNPTLLTTLSIL 160
Cdd:MTH00160  81 -----NLMLFNNISSMLINSSLLLKLGAAPFHFWFPEVMEGLSWINCFILMTWQKIAPLILLSYL---INNNFIIIIIIL 152

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 354804677 161 SVALGGWMGLNQTQIRKILAFSSISHLGWMAIIIIYNPKLTLLNFYLYTMMTAAVFLTLNSIKVLKLSTLMTAWTKMPSL 240
Cdd:MTH00160 153 SAIIGAIGGLNQTSLRKILAYSSINHLGWMLSSMMISENLWLIYFLIYSIISLSIILLFNKFNIFFLNQLFNSNNKSKKI 232

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 354804677 241 NAMLLLTLLSLAGLPPLTGFLPKWLIIQELTKQEMIPAATLISLLSLLSLFFYLRLAYCTTITLPPHTTNHMKQwrTGKP 320
Cdd:MTH00160 233 KFLLFLNLLSLGGLPPFLGFLPKWIIIQLLISNNMFFLLFILIMSSLITLYFYLRISYSSLMLNYNKNKWNLKK--KKNK 310

                        330       340
                 ....*....|....*....|....*
gi 354804677 321 VNILVAILTTLSVTLLPISPMILTI 345
Cdd:MTH00160 311 FSLILNFLSFISLFGLILSSLLFLL 335
ND2 MTH00144
NADH dehydrogenase subunit 2; Provisional
 5-302 2.40e-44

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214432 [Multi-domain]  Cd Length: 328  Bit Score: 155.04  E-value: 2.40e-44
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 354804677   5 AKLIFMTSLLLGTAMPMSSNHWIMAWAGLEINTLAILPLISKSHHPRSIEAATKYFLTQSAASALVLFSSMTNAWHTGQW 84
Cdd:MTH00144   5 SNLLFLFLMVMGTLLSLSSSHWLGVWVGLEINLIGFLPLLVYKKKSSESESVVKYFIIQSLGSSLLIFGSLIMYNLSFSW 84

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 354804677  85 DitqlshptSGLILTSAIAMKLGLVPFHFWFPEVLQGSPLSTGLLLSTIMKLPPMTLLYMTSPSLNP-TLLTTLSILSVA 163
Cdd:MTH00144  85 F--------SMSLLLLGLCLKLGLFPFHFWVPSVMAGLSWLSCFLLLTWQKVAPLFLLSNFLDLYWLaYLLCVISVLSAL 156

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 354804677 164 LGGWMGLNQTQIRKILAFSSISHLGWMAIIIIYNPKLTLLNFYLYTMMTAAVFLTLNSiKVLKLSTLMTAWTKMPSLNAM 243
Cdd:MTH00144 157 VGSIGGLNQTQVRALLAYSSISHTGWMLVAILHGSWLMWMYFLIYIVSSGFLFFSLWS-GDSGSMKDLGSLKPSYKTGLS 235

                        250       260       270       280       290
                 ....*....|....*....|....*....|....*....|....*....|....*....
gi 354804677 244 LLLTLLSLAGLPPLTGFLPKWLIIQELTKQEMIPAATLISLLSLLSLFFYLRLAYCTTI 302
Cdd:MTH00144 236 IISLLLSLGGLPPFLGFCSKLLVLISSMESSPLLLILLLLLGSLISLFFYLSVFFSSFL 294
ND2 MTH00011
NADH dehydrogenase subunit 2; Validated
 7-337 3.58e-43

NADH dehydrogenase subunit 2; Validated


Pssm-ID: 164587 [Multi-domain]  Cd Length: 330  Bit Score: 151.86  E-value: 3.58e-43
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 354804677   7 LIFMTSLLLGTAMPMSSNHWIMAWAGLEINTLAILPLISKSHHPRSIEAATKYFLTQSAASALVLFSSmtnawhTGQWDI 86
Cdd:MTH00011   9 FLFSSTMTLGTLMALSSNNWLFLWMGMELNLLSFVPLMTSSKMNQESEAAVKYFLAQALGSGLLLLGM------TMMWSF 82

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 354804677  87 TQLSHPTSGLILTSAIAMKLGLVPFHFWFPEVLQGSPLSTGLLLSTIMKLPPMTLLYMTSPSLNPTLLTTLSILSVALGG 166
Cdd:MTH00011  83 PSLLKNITALMLLVSLMLKLGMAPCHFWFPSVMSSISWTLCLILSTWQKIAPLSILFFFTSHNILPMMTSMAAMSALAGG 162

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 354804677 167 WMGLNQTQIRKILAFSSISHLGWMAIIIIYNPKLTLLNFYLYTMMTAAVFLTLNSIKVLKLSTLMTAWTKMPSLNAMLLL 246
Cdd:MTH00011 163 LGGMNQTQLRPLLAYSSIGHMGWMTMISVFSPSMAILYFMTYIIITTPLMLLFAYLNAFSTKFNSKISSMSQTTSMSLFI 242

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 354804677 247 TLLSLAGLPPLTGFLPKWLIIQELTKQEMIPAATLISLLSLLSLFFYLRLAYcTTITLPPHTTNHMKQWRTGKpvNILVA 326
Cdd:MTH00011 243 MLLSLGGLPPFTGFMPKLMAIETLTSNSMILILLVLIVGSLMNLFYYLNLIF-NFMYLSPTFSSLKSAPYEPK--TKILI 319

                        330
                 ....*....|.
gi 354804677 327 ILTTLSVTLLP 337
Cdd:MTH00011 320 SMCTLSLGLIP 330
ND2 MTH00197
NADH dehydrogenase subunit 2; Provisional
 8-342 2.63e-35

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177244 [Multi-domain]  Cd Length: 323  Bit Score: 130.95  E-value: 2.63e-35
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 354804677   8 IFMTSLLLGTAMPMSSNHWIMAWAGLEINTLAILPLISKSHHPRSIEAATKYFLTQSAASALVLFSSMTNAWHTgqwdit 87
Cdd:MTH00197   2 LFLFIIFGGVLFSLSSSNWFLVWIGMELNLIGFIPLLSQNKSITENEGAMKYFLFQEFGSALLLMGGSLSFSNL------ 75

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 354804677  88 qLSHPTSGLILTSAIAMKLGLVPFHFWFPEVLQGSPLSTGLLLSTIMKLPPMTLLymTSPSLNPTLLTTLSILSVALGGW 167
Cdd:MTH00197  76 -YLSLLSVVLVILGLLLKLGAFPFHFWVPSVMESLSWFNCFLLATWQKLAPLLIL--AFNSSSFMGLLICSVLSSLIGGI 152

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 354804677 168 MGLNQTQIRKILAFSSISHLGWMAIIIIYNPKLTLLNFYLYTMMTAAVFLTLNSIKVLKLSTLMTAWTKMPSLNAMLLLT 247
Cdd:MTH00197 153 GGMNQSNIRQLLAYSSIGHTGWMLMSLVYSPSIFMLYYLIYFVIMFMLFLFLSKNNLSSLNQQYSNPESMSSNLVFLGLS 232

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 354804677 248 LLSLAGLPPLTGFLPKWLIIQELTKQEMIPAATLISLLSLLSLFFYLRLAYCTTItlppHTTNHMKQWRTGKPVNILVAI 327
Cdd:MTH00197 233 FLSLGGLPPLSGFFLKWLILTSLLSSNISLITFMLILSTCFSLYYYLSLAYKSLI----LSNWMINFLMKINLLYSGLFI 308

                        330
                 ....*....|....*
gi 354804677 328 LTTLSVTLLPISPMI 342
Cdd:MTH00197 309 LLMMMLPLLMIFTMI 323
Proton_antipo_M pfam00361
Proton-conducting membrane transporter; This is a family of membrane transporters that ...
 23-268 6.73e-26

Proton-conducting membrane transporter; This is a family of membrane transporters that inlcudes some 7 of potentially 14-16 TM regions. In many instances the family forms part of complex I that catalyzes the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane, and in this context is a combination predominantly of subunits 2, 4, 5, 14, L, M and N. In many bacterial species these proteins are probable stand-alone transporters not coupled with oxidoreduction. The family in total represents homologs across the phyla.


Pssm-ID: 425636 [Multi-domain]  Cd Length: 291  Bit Score: 104.70  E-value: 6.73e-26
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 354804677   23 SNHWIMAWAGLEINTLAILPLI-SKSHHPRSIEAATKYFLTQSAASALVLFSSMTNAWHTGQWDITQLSHPT-------- 93
Cdd:pfam00361   1 ANDLLLMYLGWEAVLLPSYLLIgYWGKSPRSSEAGMKYFLLTLLGSSILLFGISLMYNYTGTLSFDELSKALtgglnssg 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 354804677   94 ---SGLILTSAIAMKLGLVPFHFWFPEVLQGSPLSTGLLLSTIM-KLPPMTLLYMTSPSLNPT-----LLTTLSILSVAL 164
Cdd:pfam00361  81 lllLFLLILVGFLFKSAQVPFHTWLPDAYEGAPTPVSALLAATLvKAGGYGLIRRSLLYLPSSpfiqqILLILAIISMLL 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 354804677  165 GGWMGLNQTQIRKILAFSSISHLGWMAIII----IYNPKLTLLNFYLYTMMTAAVFLTLNSI-----KVLKLSTLMTAWT 235
Cdd:pfam00361 161 GSLAALVQTDIKRLLAYSSISHMGYMLIALgagtIYGIQAAIFHLLTHGLFSAGLFLCAGSViyrrvHTRNIRDYGGLAK 240

                         250       260       270
                  ....*....|....*....|....*....|...
gi 354804677  236 KMPSLNAMLLLTLLSLAGLPPLTGFLPKWLIIQ 268
Cdd:pfam00361 241 TMPILALVFLVAMLSLAGLPPTAGFLGKFLILA 273
NuoN COG1007
NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH: ...
 14-298 8.72e-26

NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 2 (chain N) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440631 [Multi-domain]  Cd Length: 473  Bit Score: 107.12  E-value: 8.72e-26
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 354804677  14 LLGTAMPMSSNHWIMAWAGLEINTLAILPLIS-KSHHPRSIEAATKYFLTQSAASALVLF-SSMTNAWhTGQWDITQLSH 91
Cdd:COG1007  112 TLGMMLMASANDLLTLFLGLELLSLSLYVLVAfRRDDRRSSEAALKYFLLGALSSGFLLYgISLLYGA-TGSLNLAGIAA 190

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 354804677  92 PTS-----------GLILT-SAIAMKLGLVPFHFWFPEVLQGSPLSTGLLLSTIMKL----PPMTLLYMTSPSLNP---T 152
Cdd:COG1007  191 ALAagganspllllGLVLVlAGLAFKLSAVPFHMWTPDVYEGAPTPVTAFLATAPKIaafaALLRLLVEAFPGLAAdwqL 270

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 354804677 153 LLTTLSILSVALGGWMGLNQTQIRKILAFSSISHLGWMAIIIIYNPKLTL--LNFYL--YTMMTAAVFLTLNSIK----- 223
Cdd:COG1007  271 LLAVLAVLSMTVGNLAALAQTNVKRMLAYSSIAHAGYLLLGLAAGTPLGVsaALFYLlaYLFMNLGAFAVILLLSrkgge 350

                        250       260       270       280       290       300       310
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 354804677 224 VLKLSTLMTAWTKMPSLNAMLLLTLLSLAGLPPLTGFLPKWLIIQELTKQEMIPAATLISLLSLLSLFFYLRLAY 298
Cdd:COG1007  351 AEEIEDLAGLARRSPLLALAMTIFLLSLAGIPPTAGFFGKFYVFSAAVEAGLYWLAVIAVLNSVISAYYYLRVVK 425
ND2 MTH00196
NADH dehydrogenase subunit 2; Provisional
 13-296 3.60e-25

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214453 [Multi-domain]  Cd Length: 365  Bit Score: 104.34  E-value: 3.60e-25
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 354804677  13 LLLGTAMPMSSNHWIMAWAGLEINTLAILPLI-SKSHHPRSIEAATKYFLTQSAASALVLFS-------------SMTNA 78
Cdd:MTH00196   2 VALGILCLISSSNWLSVYLAIELQTLSLFILIaQNRGSGYSAEAGLKYFVLGALSSGLFLFGcallcgttgglhlSYINL 81

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 354804677  79 WHTGQWDITQLSHPTSGLILTSAIAMKLGLVPFHFWFPEVLQGSPLSTGLLLSTIMKLPPMTLLYMTSPSLNptLLTTLS 158
Cdd:MTH00196  82 VLNSGQSFSSVSVPIGYLLIIVALLFKLSVAPFHMWAPDVYEGAPTKTTALLAIVPKLGIFSILVSIGLNVN--ILLIGG 159

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 354804677 159 ILSVALGGWMGLNQTQIRKILAFSSISHLGWMAIII----IYNPKLTLLNFYLYTMMTAAVFLTLNSIKVLK--LSTLMT 232
Cdd:MTH00196 160 LFSLFVGAIGALNQTKIKRLLAYSGIGHMGFVLWGIeigsFESIQASLVYLFIYIIMSICVFSIILALNVYKnlIIEFSG 239

                        250       260       270       280       290       300
                 ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 354804677 233 AWTKMPSLNAMLLLTLLSLAGLPPLTGFLPKWLIIQELTKQEMIPAATLISLLSLLSLFFYLRL 296
Cdd:MTH00196 240 LSRRLPILAITLALTFLSIAGIPPLVGFLGKWLILLSGVVYQYYLIFLLAVFCSVIAGVYYVRI 303
PRK05777 PRK05777
NADH-quinone oxidoreductase subunit NuoN;
14-296 1.76e-23

NADH-quinone oxidoreductase subunit NuoN;


Pssm-ID: 235603 [Multi-domain]  Cd Length: 476  Bit Score: 100.67  E-value: 1.76e-23
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 354804677  14 LLGTAMPMSSNHWIMAWAGLEINTLAILPLIS-KSHHPRSIEAATKYFLTQSAASALVLFSSMTNAWHTGQWDITQL--- 89
Cdd:PRK05777 113 LLGMMVMVSANDLLTLFLGLELLSLPLYALAAlRRDRRRSLEAAIKYFVLGALASGFLLYGMSLLYGATGSLSFAGIaka 192

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 354804677  90 ----SHPTSGLI-----LTSAIAMKLGLVPFHFWFPEVLQGSPLSTGLLLSTIMKL----PPMTLLYMTSPSLNPT---L 153
Cdd:PRK05777 193 ladgSGNSLLLLfglvfLLVGLAFKLSAVPFHMWTPDVYEGAPTPVTAFLATAPKIaafaVLLRLLVVAFGGLSEDwqqV 272

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 354804677 154 LTTLSILSVALGGWMGLNQTQIRKILAFSSISHLGWMAIIIIYNPKLTL--LNFYL--YTMMTAAVFLTLNSIK-----V 224
Cdd:PRK05777 273 LAIIAIASMLVGNLAALSQTNIKRLLAYSSIAHAGYLLVGLAAGTAEGYsaVLFYLlaYLFMTLGAFGVISLLRrkggeA 352

                        250       260       270       280       290       300       310
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 354804677 225 LKLSTLMTAWTKMPSLNAMLLLTLLSLAGLPPLTGFLPKWLIIQELTKQEMIPAATLISLLSLLSLFFYLRL 296
Cdd:PRK05777 353 ESISDFAGLSKRSPLLAAVMTIFMLSLAGIPPTAGFWGKFYVFEAAVEAGLWWLAVIGVLNSAIGAFYYLRV 424
NDH_I_N TIGR01770
proton-translocating NADH-quinone oxidoreductase, chain N; This model describes the 14th ...
 14-297 6.17e-22

proton-translocating NADH-quinone oxidoreductase, chain N; This model describes the 14th (based on E. coli) structural gene, N, of bacterial and chloroplast energy-transducing NADH (or NADPH) dehydrogenases. This model does not describe any subunit of the mitochondrial complex I (for which the subunit composition is very different), nor NADH dehydrogenases that are not coupled to ion transport. The Enzyme Commission designation 1.6.5.3, for NADH dehydrogenase (ubiquinone), is applied broadly, perhaps unfortunately, even if the quinone is menaquinone (Thermus, Mycobacterium) or plastoquinone (chloroplast). For chloroplast members, the name NADH-plastoquinone oxidoreductase is used for the complex and this protein is designated as subunit 2 or B. This model also includes a subunit of a related complex in the archaeal methanogen, Methanosarcina mazei, in which F420H2 replaces NADH and 2-hydroxyphenazine replaces the quinone. [Energy metabolism, Electron transport]


Pssm-ID: 273795 [Multi-domain]  Cd Length: 468  Bit Score: 96.17  E-value: 6.17e-22
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 354804677   14 LLGTAMPMSSNHWIMAWAGLEINTLAILPLIS-KSHHPRSIEAATKYFLTQSAASALVLFSSMTNAWHTGQWDITQLSHP 92
Cdd:TIGR01770 112 LLGIFLLVSSNDLLSIYLGLELQSLCFYVLAGlKRKSRFSTEAGLKYFILGAFSSGLLLFGISLIYGFTGSLNFEDLLLF 191

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 354804677   93 TSGLILT------------SAIAMKLGLVPFHFWFPEVLQGSPLSTGLLLSTIMKLP---PMTLLYMTSPS----LNPTL 153
Cdd:TIGR01770 192 LSNGMLNisllllgivlilVGLLFKLSAVPFHMWVPDVYEGAPTPVTAFFSIVPKIAifaVFLRLFLYILFgfseAWQIF 271

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 354804677  154 LTTLSILSVALGGWMGLNQTQIRKILAFSSISHLGWMAIIIIYNPKLTLLN--FYL--YTMMTAAVFLTLNSIKVLK--- 226
Cdd:TIGR01770 272 LAIIAFLSMLIGNFGALAQKKVKRLLAYSSISHVGYILIGLLAGTLEGIKAvlFYIfiYALMSLGAFGVLSLLRSYKdew 351

                         250       260       270       280       290       300       310
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 354804677  227 ---LSTLMTAWTKMPSLNAMLLLTLLSLAGLPPLTGFLPKWLIIQELTKQEMIPAATLISLLSLLSLFFYLRLA 297
Cdd:TIGR01770 352 ieyISDFAGLFKTNPILAILILIFMFSLAGIPPLAGFFGKFYVFFALLKSGLYWLAVIAVLTSVIGAFYYLRVV 425
ND2 MTH00199
NADH dehydrogenase subunit 2; Provisional
 13-267 2.22e-21

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177245 [Multi-domain]  Cd Length: 460  Bit Score: 94.70  E-value: 2.22e-21
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 354804677  13 LLLGTAMPMSSNHWIMAWAGLEINTLAILPLIS-KSHHPRSIEAATKYFLTQSAASALVLFSSMTNAWHTGQWDITQLSH 91
Cdd:MTH00199 106 VALGSLLLVSSINWLSIYLAIELQTLTLFILVAlKRDSAYSTEAGLKYFVLGAVSSGLFLFGCALLYGLTGETSIQGINS 185

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 354804677  92 PTSG----LILTSAIAMKLGLVPFHFWFPEVLQGSPLSTGLLLSTIMKLPPMTLLYMTSPSLNPTLLTtlSILSVALGGW 167
Cdd:MTH00199 186 ILTGdvgkILITISLLFKLSAAPFHMWAPDVYEGAPTITTALLATVPKIGVFSILVQIGPVTNVVLIC--AVLSIIYGAI 263

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 354804677 168 MGLNQTQIRKILAFSSISHLGW----MAIIIIYNPKLTLLNFYLYTMMTAAVFLTLNSIKVLK--LSTLMTAWTKMPSLN 241
Cdd:MTH00199 264 GALNQTKIKRLLAYSGIGHMGFilfgVAIGSFESIQASLIYMIIYVIMSICSFSIILSLKLTKglIVEVSGLSRKNPVIA 343

                        250       260
                 ....*....|....*....|....*.
gi 354804677 242 AMLLLTLLSLAGLPPLTGFLPKWLII 267
Cdd:MTH00199 344 LTLALTFLSIAGIPPLAGFLSKWLIL 369
HyfB COG0651
Formate hydrogenlyase subunit 3/Multisubunit Na+/H+ antiporter, MnhD subunit [Energy ...
 13-279 2.01e-15

Formate hydrogenlyase subunit 3/Multisubunit Na+/H+ antiporter, MnhD subunit [Energy production and conversion, Inorganic ion transport and metabolism];


Pssm-ID: 440416 [Multi-domain]  Cd Length: 430  Bit Score: 76.72  E-value: 2.01e-15
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 354804677  13 LLLGTAMPMSSNHWIMAWAGLEINTLAILPLISKSHHPRSIEAATKYFLTQSAASALVLFSSMTNAWHTGQWDITQLSH- 91
Cdd:COG0651  116 LLAGMNGAFLTGDLFNLFVFFEVMLLASYGLVALGGTKEALRAGLKYLILNLVGSALFLLGVGLLYGATGTLNMADLAAr 195

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 354804677  92 ---------PTSGLILTSAIAMKLGLVPFHFWFPEVLQGSPLSTGLLLSTIM-KLPP------MTLLYMTSPSLNP-TLL 154
Cdd:COG0651  196 laeldpgllLAAFALLLVGFGIKAALFPLHFWLPDAYPAAPSPVSALLSGLLtKVGVyailrvLTLLFGADPALFLgTLL 275

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 354804677 155 TTLSILSVALGGWMGLNQTQIRKILAFSSISHLGWMAIIIIYNPKLTLLNFYLY----TMMTAAVFLTLNSIKVL----K 226
Cdd:COG0651  276 LVLGLLTMLVGALGALAQRDLKRLLAYSSVSQIGYILLGLGLGTPLGLAGALFHllnhALAKALLFLAAGAIERAtgtrD 355

                        250       260       270       280       290
                 ....*....|....*....|....*....|....*....|....*....|...
gi 354804677 227 LSTLMTAWTKMPSLNAMLLLTLLSLAGLPPLTGFLPKWLIIQELTKQEMIPAA 279
Cdd:COG0651  356 LDKLGGLGKRMPLTAAAFLIGALALAGLPPLSGFVSKWLLLQAALEAGAWLLA 408
ND2 MTH00198
NADH dehydrogenase subunit 2; Provisional
 15-192 5.45e-14

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214454 [Multi-domain]  Cd Length: 607  Bit Score: 72.97  E-value: 5.45e-14
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 354804677  15 LGTAMPMSSNHWIMAWAGLEINTLAILPLISKSHHPRSI---------EAATKYFLTQSAASALVLFSSMTNAWHTGQWD 85
Cdd:MTH00198 199 LGGLLLIESANWLTIYLALEFQTLALFILAGEGSQPGSHfpspgntppESGLKYWILGAMSSGFYLFGCALYFGFTGNEG 278

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 354804677  86 I-------------TQLSHPTSG-LILTSAIAMKLGLVPFHFWFPEVLQGSPLSTGLLLSTIMKLPPMTLLymTSPSLNP 151
Cdd:MTH00198 279 MlgtilsatlettnIELRQGSLGyLFITVAILFKLAAAPFHMWTPDVYEGAPTPTTALIAIIPKFTVYILL--TSLVITS 356

                        170       180       190       200
                 ....*....|....*....|....*....|....*....|.
gi 354804677 152 TLLTTLSILSVALGGWMGLNQTQIRKILAFSSISHLGWMAI 192
Cdd:MTH00198 357 KLLLSVAIISLVVGAFGALNQTRIKRLLAYSGIGHIGFILI 397
PRK02504 PRK02504
NAD(P)H-quinone oxidoreductase subunit N;
50-192 2.08e-12

NAD(P)H-quinone oxidoreductase subunit N;


Pssm-ID: 235044 [Multi-domain]  Cd Length: 513  Bit Score: 67.77  E-value: 2.08e-12
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 354804677  50 PRSIEAATKYFLTQSAASALVLF-SSMTNAWHTGQwdiTQLS--------HPTSGLILT-----SAIAMKLGLVPFHFWF 115
Cdd:PRK02504 157 PRSNEAALKYLLIGAASSAIFLYgSSLLYGLSGGS---TQLSaialalitSPSLGLALAlvfviAGIAFKISAVPFHQWT 233

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 354804677 116 PEVLQGSPLSTGLLLSTIMKLP----PMTLLYMTSPSLNP---TLLTTLSILSVALGGWMGLNQTQIRKILAFSSISHLG 188
Cdd:PRK02504 234 PDVYEGSPTPVVAFLSVGSKAAgfalAIRLLVTAFPSFDEqwkLLFTALAILSMVLGNVVALAQTSMKRMLAYSSIGQAG 313


                 ....
gi 354804677 189 WMAI 192
Cdd:PRK02504 314 FVMI 317
ndhB CHL00049
NADH dehydrogenase subunit 2
 7-208 4.42e-12

NADH dehydrogenase subunit 2


Pssm-ID: 176990 [Multi-domain]  Cd Length: 494  Bit Score: 66.95  E-value: 4.42e-12
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 354804677   7 LIFMTSLLLGTAMPMSSNHWIMAWAGLEINTLAILPLISKSHHP-RSIEAATKYFLTQSAASALVL--FSSM--TNAWHT 81
Cdd:CHL00049 114 LLFVLTATLGGMFLCGANDLITIFVALECLSLCSYLLSGYTKKDvRSNEATMKYLLMGGASSSILVygFSWLygLSGGEI 193

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 354804677  82 GQWDI------TQLSHPTSGLI----LTSAIAMKLGLVPFHFWFPEVLQGSPLSTGLLLSTIMKLPPMTL----LYMTSP 147
Cdd:CHL00049 194 ELQEIvnglinTQMYNSPGISIalifITVGIGFKLSLAPFHQWTPDVYEGSPTPVVAFLSVTSKVAASALatriFDIPFY 273

                        170       180       190       200       210       220       230
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 354804677 148 SLNP---TLLTTLSILSVALGGWMGLNQTQIRKILAFSSISHLGWMAIIII-------YNPKLTLLNFYLY 208
Cdd:CHL00049 274 FSSNewhLLLEILAILSMILGNLIAITQTSMKRMLAYSSIGQIGYVIIGIIvgdsndgYASMITYMLFYIF 344
NuoM COG1008
NADH:ubiquinone oxidoreductase subunit 4 (chain M) [Energy production and conversion]; NADH: ...
 49-192 5.19e-11

NADH:ubiquinone oxidoreductase subunit 4 (chain M) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 4 (chain M) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440632 [Multi-domain]  Cd Length: 488  Bit Score: 63.56  E-value: 5.19e-11
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 354804677  49 HPRSIEAATKYFLTQSAASALVLFSSMTNAWHTGQW--DI-----TQLSHPTSGLILTS---AIAMKLGLVPFHFWFPEV 118
Cdd:COG1008  156 GERRIYAAIKFFLYTLAGSLLMLVAILALYFLAGALtfDIaelaaAPLPLTAQLLLFLAffiAFAVKVPMFPFHTWLPDA 235

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 354804677 119 LQGSPLSTGLLLSTIM-KLP-------PMTLLYMTSPSLNPTLLTtLSILSVALGGWMGLNQTQIRKILAFSSISHLGWM 190
Cdd:COG1008  236 HVEAPTAGSVLLAGVLlKMGgygllrfALPLFPEASAYFAPLLAA-LGVIGIIYGALVALAQTDLKRLIAYSSVSHMGFV 314


                 ..
gi 354804677 191 AI 192
Cdd:COG1008  315 LL 316
PRK08376 PRK08376
putative monovalent cation/H+ antiporter subunit D; Reviewed
 33-266 5.94e-10

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 236252 [Multi-domain]  Cd Length: 521  Bit Score: 60.50  E-value: 5.94e-10
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 354804677  33 LEINTLAILPLIS-KSHHPRSIEAATKYFLTQSAASALVLFS-----------SMTNAWHTGQWDITQLSHPTSGLiLTS 100
Cdd:PRK08376 150 LEIMSIASYALVAfRNDTWEAIEAGIKYMFVGSLASSMVLLGiallygqygtlNMAYLAVKMSENPTVVAKIALAL-FIA 228

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 354804677 101 AIAMKLGLVPFHFWFPEVLQGSP--LSTGLLLSTIMKLPPM--TLLYMTSPSLNPT----LLTTLSILSVALGGWMGLNQ 172
Cdd:PRK08376 229 GLAMKSGAVPVHMWLPDAYPAAPssISAMLLVIKQAGLYALarVLFSIYGPAINLAtvgwVIIILGCLTMFVGVAMAVVQ 308

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 354804677 173 TQIRKILAFSSISHLGWM------AIIIIYNPKLT----------LLNFYLYTMMTAAVFLT----LNSIKVLKLSTLMT 232
Cdd:PRK08376 309 KDVKRLLAYHSVSQIGYMllglgvGLAALGDPAMAsygeialaggIYHIVNHALYKALLFLTagavIYETGTRNLNELGG 388

                        250       260       270
                 ....*....|....*....|....*....|....
gi 354804677 233 AWTKMPSLNAMLLLTLLSLAGLPPLTGFLPKWLI 266
Cdd:PRK08376 389 LARTMPKTTIAFLIGAAAIVGLPPFNGFASKWLI 422
PRK08668 PRK08668
NADH dehydrogenase subunit M; Validated
 2-275 5.99e-08

NADH dehydrogenase subunit M; Validated


Pssm-ID: 236332 [Multi-domain]  Cd Length: 610  Bit Score: 54.23  E-value: 5.99e-08
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 354804677   2 NPQAKLIFMTSLLLGTAMPMSSNHWIMAWAGLEINTLAILPLISKSHHpRSIEAATKYFLTQSAASALVLFSSMTNAWHT 81
Cdd:PRK08668  96 NDAYFNMFALMSLAGVLGVFLANDLLTLYIFWEIMTFSSFMMVPMGKK-ESRKASLKYFVLSAIGAYAMLYAIFLIYAKT 174

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 354804677  82 GQWDITQ----LSHPTSG-------LILTSAIAMKLGLVPFHFWFPEVLQGSP------LSTGL-------LLSTIMKLP 137
Cdd:PRK08668 175 GTFDFADisqgLINDTSTgfalivfLFLLAFGVAKAGIFPLHVWAPDAYSEAPqsfsavLSGQLsklgaygFLLVLYVLP 254

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 354804677 138 PMTLL-----YMTSPSLNpTLLTTLSILSVALGGWMGLNQTQIRKILAFSSISHLGWMAIIIIYNPKLT----LLNFYLY 208
Cdd:PRK08668 255 GTKLFsefgtYRGVPLFN-YILAWLGNISIIVGTLMAILQEDIKKLIAYSSVANGGYILVGLGLGTSLGfaggLFHVFNH 333

                        250       260       270       280       290       300       310
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 354804677 209 TMMTAAVFLTLNSI----KVLKLSTLMTAWTKMPSLNAMLLLTLLSLAGLPPLTGFLPKWLIIQELTKQEM 275
Cdd:PRK08668 334 ALFKGLFFLIFAAViyrtGTTKISEMGGLIEKMPFTFAMYLVAIISLAGIPPMSGFASKWLIFEALISKGM 404
NADH_dehy_S2_C pfam06444
NADH dehydrogenase subunit 2 C-terminus; This family consists of the C-terminal region ...
 291-340 1.60e-07

NADH dehydrogenase subunit 2 C-terminus; This family consists of the C-terminal region specific to the eukaryotic NADH dehydrogenase subunit 2 protein and is found in conjunction with pfam00361.


Pssm-ID: 461914 [Multi-domain]  Cd Length: 51  Bit Score: 47.25  E-value: 1.60e-07
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|.
gi 354804677  291 FFYLRLAYCTTITLPPHTTNHMKQWRTGKPVNI-LVAILTTLSVTLLPISP 340
Cdd:pfam06444   1 FFYLRLSYSTTLTLFPNTNNSKMKWRFNSTKNTlLLPTLTTLSILLLPLTP 51
PRK12644 PRK12644
putative monovalent cation/H+ antiporter subunit A; Reviewed
 80-263 2.25e-07

putative monovalent cation/H+ antiporter subunit A; Reviewed


Pssm-ID: 237154 [Multi-domain]  Cd Length: 965  Bit Score: 52.62  E-value: 2.25e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 354804677  80 HTGQWDITQL-SHPTSGLILTSAIAM-------KLGLVPFHFWFPEVLQG-SPLS----------TGLLLstIMKLPPMt 140
Cdd:PRK12644 183 AAGTYRLSELlADPPTGPAVSVAVVLilvgalsKSAIVPFHFWLPGAMAApTPVSaylhaaamvkAGIYL--VARLAPG- 259

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 354804677 141 llYMTSPSLNPTLLTtLSILSVALGGWMGLNQTQIRKILAFSSISHLGWMAIIIIYNPK------LTLLnfYLYTMMTAA 214
Cdd:PRK12644 260 --FADVPVWRPTVLV-LGLATMLLGGWRALRQHDLKLILAYGTVSQLGFLTVLVGIGTRdaalagLAML--LAHALFKAA 334

                        170       180       190       200       210
                 ....*....|....*....|....*....|....*....|....*....|....*.
gi 354804677 215 VFLTLNSI-------KVLKLSTLmtaWTKMPSLNAMLLLTLLSLAGLPPLTGFLPK 263
Cdd:PRK12644 335 LFLVVGIIdhstgtrDIRKLSGL---GRRQPVLAVVAALAAASMAGLPPLLGFVAK 387
PRK08375 PRK08375
putative monovalent cation/H+ antiporter subunit D; Reviewed
 33-298 2.61e-07

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 236251 [Multi-domain]  Cd Length: 487  Bit Score: 52.19  E-value: 2.61e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 354804677  33 LEINTLAILPLISKSHHPRSIEAATKYFLTQSAASALVLFS-SMTNAwHTGQWDITQLSH--PTSGLILT------SAIA 103
Cdd:PRK08375 135 LEIMSLSSYALVAMGGDRRALAAARKYLIVGLIGSTFLLIGvGLLYG-VTGTLNMADLAGalAENPTVVTafgfvlLALA 213

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 354804677 104 MKLGLVPFHFWFPEVLQG-SPLSTGLLLSTIMKLP--PMTLLY--------MTSPSLNpTLLTTLSILSVALGGWMGLNQ 172
Cdd:PRK08375 214 LKAAVFPLHTWLPRAYPAaPPVVTALLSGLVTKVAvyALIRIYftvfggdfRFALGLG-WLLAVLALLSMLVGSLAALGQ 292

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 354804677 173 TQIRKILAFSSISHLGWMAIIIIYNPKLTLLN--FYL--YTMMTAAVFLTLNSIKVL----KLSTLMTAWTKMPSLNAML 244
Cdd:PRK08375 293 DDVKRVLAYSTVSQMGYILLGLALLTPLALAAglLHLlhHALMKGALFLAAGAIEVTygtrRLSELSGLGRRMPLTAAAF 372

                        250       260       270       280       290
                 ....*....|....*....|....*....|....*....|....*....|....
gi 354804677 245 LLTLLSLAGLPPLTGFLPKWLIIQELTKQEMIPAATLISLLSLLSLFFYLRLAY 298
Cdd:PRK08375 373 AVASLSLIGVPPTSGFVSKWYLVVGAVEAGQWLVLAVLLASSLLALLYFLRIWY 426
PRK06458 PRK06458
hydrogenase 4 subunit F; Validated
 8-192 3.27e-07

hydrogenase 4 subunit F; Validated


Pssm-ID: 235805 [Multi-domain]  Cd Length: 490  Bit Score: 51.85  E-value: 3.27e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 354804677   8 IFMTSLLLGtampMSSNHWIMAWAGLEINTLAILPLISKSHHPRSIEAATKYFLTQSAASALVLFSSM---TNAWhtgqw 84
Cdd:PRK06458 116 LFLFTMLLA----LTSNNLGLMWVAIEATTLSSALLVGIYRTRASLEAAWKYIIICSVGVAFALFGTIlvyANAA----- 186

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 354804677  85 diTQLSHPTSGLILTSAIAM----------------------KLGLVPFHFWFPEVLQGSPLSTGLLLSTIMkLP----- 137
Cdd:PRK06458 187 --TVMGDGEMAILWTELLKHaslldptlmklafvflligfgtKVGLFPMHAWLPDAHSEAPSPVSALLSGVL-LNvalya 263

                        170       180       190       200       210
                 ....*....|....*....|....*....|....*....|....*....|....*....
gi 354804677 138 ----PMTLLYMTSPSLNPTLLTTLSILSVALGGWMGLNQTQIRKILAFSSISHLGWMAI 192
Cdd:PRK06458 264 vlryYILIDAAIGSDFPGRLLLIFGLLSVLVAAFFLLRQRDIKRLFAYSSIEHMGLIAF 322
PRK05846 PRK05846
NADH:ubiquinone oxidoreductase subunit M; Reviewed
 50-194 3.38e-07

NADH:ubiquinone oxidoreductase subunit M; Reviewed


Pssm-ID: 235622 [Multi-domain]  Cd Length: 497  Bit Score: 51.74  E-value: 3.38e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 354804677  50 PRSIEAATKYFLTQSAASALVLFSSMTNAWH----TGQWDITQLSHPTSG--------LILTSAIAMKLGLVPFHFWFPE 117
Cdd:PRK05846 157 KNRIYAATKFFLYTLLGSLLMLVAIIYLVVVyynaTGTFDIADLLNLPLPpgvqywlfLAFFIAFAVKMPMFPLHTWLPD 236

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 354804677 118 VLQGSPLSTGLLLSTIM-KLPPMTLLYMTSPsLNP-------TLLTTLSILSVALGGWMGLNQTQIRKILAFSSISHLGW 189
Cdd:PRK05846 237 AHVQAPTAGSVLLAGILlKMGAYGLLRFSLP-LFPdashefaPIIITLGVIAIIYGALVALAQTDIKKLIAYSSISHMGF 315


                 ....*
gi 354804677 190 MAIII 194
Cdd:PRK05846 316 VTLGI 320
NDH_I_M TIGR01972
proton-translocating NADH-quinone oxidoreductase, chain M; This model describes the 13th ...
 50-268 4.12e-07

proton-translocating NADH-quinone oxidoreductase, chain M; This model describes the 13th (based on E. coli) structural gene, M, of bacterial NADH dehydrogenase I, as well as chain 4 of the corresponding mitochondrial complex I and of the chloroplast NAD(P)H dehydrogenase complex. [Energy metabolism, Electron transport]


Pssm-ID: 273903 [Multi-domain]  Cd Length: 481  Bit Score: 51.48  E-value: 4.12e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 354804677   50 PRSIEAATKYFLTQSAASALVLFSSMTNAWHTGQW----DITQLSHPTSG-----LILTSAIAMKLGLVPFHFWFPEVLQ 120
Cdd:TIGR01972 152 PNRIYAAMKFFLYTLAGSLLMLLAILGLYFLGGGTfdllELLNLPLPFGVqtwlfLAFFIAFAVKVPLFPLHTWLPDAHV 231

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 354804677  121 GSPLSTGLLLSTIM-KLPP-------MTLLYMTSPSLNPtLLTTLSILSVALGGWMGLNQTQIRKILAFSSISHLGWMAI 192
Cdd:TIGR01972 232 EAPTAGSVILAGVLlKMGTygflrfnLPLFPDASLYFAP-VLAALGVIAIIYGALIALAQTDIKRLIAYSSISHMGFVLL 310

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 354804677  193 IIIYNPKLTLLNFYLYT----MMTAAVFLTLNSI----KVLKLSTLMTAWTKMPSLNAMLLLTLLSLAGLPPLTGFLPKW 264
Cdd:TIGR01972 311 GIFSFNELGISGAVFQMishgLITAALFLLVGVLyeraHTRDIAKYGGLANKMPVLAAFFMLFAMASLGLPGTSGFVGEF 390


                  ....
gi 354804677  265 LIIQ 268
Cdd:TIGR01972 391 LILL 394
PRK08676 PRK08676
hydrogenase membrane subunit; Validated
 13-194 7.59e-07

hydrogenase membrane subunit; Validated


Pssm-ID: 181537 [Multi-domain]  Cd Length: 485  Bit Score: 50.52  E-value: 7.59e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 354804677  13 LLLGTAMPMSSNHWIMAWAGLEINTLAILPLISKSHHPRSIEAATKYFLTQSAA------SALVLFSSMTNAWHTGQWDI 86
Cdd:PRK08676 111 LLSVITFAFFSDNLALFWIFAELTTVFSAMLIAILSARENIDAALKYIFIASTAmifafiGLIFLFSLTRQALGTGTLNW 190

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 354804677  87 TQL----SHPTSGLILTSAIAM------KLGLVPFHFWFPEVLQGSPLSTGLLLS-TIMKLPPMTLLYMTS-------PS 148
Cdd:PRK08676 191 TELaahaSLLSPSVLGASFLFIfigflaKSGLVPFHTWLPAAYAKAPSVVSALLSgTVLNIGIYGILRLSAllrqsgaAE 270

                        170       180       190       200
                 ....*....|....*....|....*....|....*....|....*.
gi 354804677 149 LNPTLLTTLSILSVALGGWMGLNQTQIRKILAFSSISHLGWMAIII 194
Cdd:PRK08676 271 QFSNVLIGLGIFSIAVAAFSMLSQRNLKKLIAFSSIEHMGLMLLGI 316
PRK12667 PRK12667
putative monovalent cation/H+ antiporter subunit D; Reviewed
 96-336 7.41e-06

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 237167 [Multi-domain]  Cd Length: 520  Bit Score: 47.66  E-value: 7.41e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 354804677  96 LILTSAIAMKLGLVPFHFWFPEVLQGSPLSTGLLLSTIMK-------LPPMTLLYMTSPSLNPTLLTTLSIL------SV 162
Cdd:PRK12667 227 ALALWAFTIKAAIFPNHFWLPDAHPAAPSPVSAMLSGLVVnvgayaiIRFLYTIFGISPSLIDFRAALSPILiilgavSA 306

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 354804677 163 ALGGWMGLNQTQIRKILAFSSISHLGWMAIIIIYNPKLTLLNFYLYTM----------MTAAVFL-TLNSIKVLKLSTLM 231
Cdd:PRK12667 307 IIGALMMVVQKDVKRLLAYSTISHMGYIFMGIGIGTQLGLAAALFHIInhaiaksllfLASGVFIhAAGTRDIDELAGLG 386

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 354804677 232 TawtKMPSLNAMLLLTLLSLAGLPPLTGFLPKWLIIQELTKQEMIPAATLISLLSLLSLFFYLRLAYCTTITLPPHTTNH 311
Cdd:PRK12667 387 R---KMPIASFAFLIGALSLVGIPPLNGFFSKLLLFNALLESGFYLPALVLLIASAISLVGYFRAWYSLFFGKPKSGEEV 463

                        250       260
                 ....*....|....*....|....*
gi 354804677 312 MKQWRTGKPVNILVAILTTLSVTLL 336
Cdd:PRK12667 464 EHKESPSMSVVILVLALAVLILGIL 488
NuoL COG1009
Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ ...
 7-190 8.78e-06

Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ antiporter, MnhA subunit [Energy production and conversion]; Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ antiporter, MnhA subunit is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440633 [Multi-domain]  Cd Length: 608  Bit Score: 47.45  E-value: 8.78e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 354804677   7 LIFMTSLLlGTAMpmsSNHWIMAWAGLEINTLAILPLISKSHH-PRSIEAATKYFLTQSAASALVLFSSMTNAWHTGQWD 85
Cdd:COG1009  118 LLFMAAML-GLVL---SDNLLLLFVFWELVGLCSYLLIGFWYEkPSARRAARKAFLVTRVGDLGLLLGILLLGAIAGTLN 193

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 354804677  86 ITQL-----SHPTSGLILTSAIAM------KLGLVPFHFWFPEVLQG-SPLSTgLLLSTIMKLPPMTLLYMTSP--SLNP 151
Cdd:COG1009  194 FSELlaaapTILSSPLLTLILLLLllgafgKSAQFPLHFWLPDAMEGpTPVSA-LLHAATMVKAGVYLLARLSPlfALSP 272

                        170       180       190       200
                 ....*....|....*....|....*....|....*....|..
gi 354804677 152 TLLTTLSILSVA---LGGWMGLNQTQIRKILAFSSISHLGWM 190
Cdd:COG1009  273 VWLTVVAIIGAItalFAALIALAQTDIKRVLAYSTVSQLGYM 314
ND4 MTH00204
NADH dehydrogenase subunit 4; Provisional
 53-219 5.41e-05

NADH dehydrogenase subunit 4; Provisional


Pssm-ID: 164750 [Multi-domain]  Cd Length: 485  Bit Score: 44.67  E-value: 5.41e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 354804677  53 IEAATKYFLTQSAASALVLFSSMTNAWHTGQWD-----ITQLSHPTSGLILTS---AIAMKLGLVPFHFWFPEVLQGSPL 124
Cdd:MTH00204 162 VRASYYFFFYTFAGSVFMLLGIFQLYSITGTTDyqillNIKLPLSIQKWLLVGfflSLAVKIPQIPFHIWLPQAHVEAPV 241

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 354804677 125 STGLLLSTI-MKLPPMTLLYMTSPSL-------NPtLLTTLSILSVALGGWMGLNQTQIRKILAFSSISHLGwmaiiiiy 196
Cdd:MTH00204 242 AGSVILAGIlLKLGGYGFLRFSWPLFpaaseyfAP-LIVMLSVIAVIYGSLTTCRQVDFKRLIAYSSVAHMG-------- 312

                        170       180
                 ....*....|....*....|....*
gi 354804677 197 npkLTLLNFYLYTM--MTAAVFLTL 219
Cdd:MTH00204 313 ---LVPLGLFTHTIegLVAAVFLML 334
PRK12663 PRK12663
Na+/H+ antiporter subunit D;
92-268 6.93e-05

Na+/H+ antiporter subunit D;


Pssm-ID: 237163 [Multi-domain]  Cd Length: 497  Bit Score: 44.56  E-value: 6.93e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 354804677  92 PTSGLILTSAIAMKLGLVPFhFWFPEVLQGSPLSTGLLLSTIMK-------LPPMTLLYMTSPSLNPTLLTTLSILSVAL 164
Cdd:PRK12663 207 TTIALLFLLAFGMKAALFPF-MWLPAAYHTPNTEVAALFAALLTkvgiyalIRVFTLLFPQERELLHPLLATMAAITMVI 285

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 354804677 165 GGWMGLNQTQIRKILAFSSISHLGWM-AIIIIYNPK-LTLLNFYLYTMMT--AAVFLTLNSIKVL----KLSTLMTAWTK 236
Cdd:PRK12663 286 GALGALAYKDIRRIAGYQVISSIGFIlLGLALGTPAgINGAIFYLVHDMVvkTALFLIAGSLVRLtgyrSLQYLGGLYRK 365

                        170       180       190
                 ....*....|....*....|....*....|..
gi 354804677 237 MPSLNAMLLLTLLSLAGLPPLTGFLPKWLIIQ 268
Cdd:PRK12663 366 EPLFGALFLILIFAIGGLPPFSGFWGKVLLVQ 397
PRK12662 PRK12662
putative monovalent cation/H+ antiporter subunit D; Reviewed
 96-267 7.45e-05

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 183662 [Multi-domain]  Cd Length: 492  Bit Score: 44.34  E-value: 7.45e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 354804677  96 LILTSAIAMKLGLVPFHFWFPEVLQGSP---------LSTGLLLSTIMKLPPMTL---LYMTSPSLNpTLLTTLSILSVA 163
Cdd:PRK12662 213 LFIMVGLFIKAALFPFHKWLIQAYSEAPsfisvffsgTSTKVMIYLIIRIVYDVFkanFVFTTLPFN-NVFMILAALAIV 291

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 354804677 164 LGGWMGLNQTQIRKILAFSSISHLGWMAIIIIYNPKLTLLNFYLY----TMMTAAVFLTLNSIKV----LKLSTLMTAWT 235
Cdd:PRK12662 292 FGSVLAILSKDIKRIFAYSSISHIGYIILAVSLNTYYGLAAAVAYivnhSIVKSALFMVSGSISYhfgtTKLEDCLNLWK 371

                        170       180       190
                 ....*....|....*....|....*....|..
gi 354804677 236 KMPSLNAMLLLTLLSLAGLPPLTGFLPKWLII 267
Cdd:PRK12662 372 SMPKITLAFVLLSLSLIGMPPTSGFVAKWYIL 403
PRK08667 PRK08667
hydrogenase membrane subunit; Validated
 55-188 1.18e-04

hydrogenase membrane subunit; Validated


Pssm-ID: 236331 [Multi-domain]  Cd Length: 644  Bit Score: 43.95  E-value: 1.18e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 354804677  55 AATKYFLTQSAASALVLFSSMTNAWHTGQWDITQLSHPT-----SGLILTSAIAMKLGLVPFHFWFPEVLQGSPLSTGLL 129
Cdd:PRK08667 163 AGIFYFVMTQLSTVFLMLGIIVLFIQTGSFELSPLGASAgilslVFLLLFLGFGIKAGIIPFHKWLPYAHPASPSNVSAL 242

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 354804677 130 LSTIM-KLPPMTLLYMTSPSLNP-----TLLTTLSILSVALGGWMGLNQTQIRKILAFSSISHLG 188
Cdd:PRK08667 243 MSGVMlKVAVYGLVRFLMDVLSPelwwgVLILLAGSISALLGVIYALKEHDLKGLLAYSSIENIG 307
PRK06473 PRK06473
NADH-quinone oxidoreductase subunit M;
55-190 1.55e-04

NADH-quinone oxidoreductase subunit M;


Pssm-ID: 235810 [Multi-domain]  Cd Length: 500  Bit Score: 43.54  E-value: 1.55e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 354804677  55 AATKYFLTQSAASALVLFSSMTNAWHTGQWDI---TQLSHP---TSGLILTSAI----AMKLGLVPFHFWFPE--VLQGS 122
Cdd:PRK06473 158 AATKFLLYTAISGILILVSFLGLVWLSGASSFdyePLRSHTlplSTQLLLLAPIlvgfGIKIPLVPFHTWLPDahVEAST 237

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 354804677 123 PLSTgLLLSTIMKLPPMTLL------YMTSPSLNPTLLTTLSILSVALGGWMGLNQTQIRKILAFSSISHLGWM 190
Cdd:PRK06473 238 PVSV-LLAGVLLKLGTYGLLrfgvglFPEAWVYLAPWLATWAVVSVLYGASCAIAQKDMKKMVAYSSIGHMGYI 310
PRK12647 PRK12647
putative monovalent cation/H+ antiporter subunit A; Reviewed
 109-266 1.88e-04

putative monovalent cation/H+ antiporter subunit A; Reviewed


Pssm-ID: 237156 [Multi-domain]  Cd Length: 761  Bit Score: 43.37  E-value: 1.88e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 354804677 109 VPFHFWFPEVLQG-SPLSTGLLLSTIMKLPpMTLLYMTSPSLNPT-----LLTTLSILSVALGGWMGLNQTQIRKILAFS 182
Cdd:PRK12647 212 FPFHFWLPNAMEApTPVSAYLHSATMVKAG-IYLLARLNPVLGGTplwqtILPLFGGLTMLTGALLAVRQTDLKLILAYS 290

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 354804677 183 SISHLGWMAIIIIYNPKLTLLNFYLY----TMMTAAVFLTLNSIK-------VLKLSTLmtaWTKMPSLNAMLLLTLLSL 251
Cdd:PRK12647 291 TVSALGTLVMLLGLGSELAIKAAVLFlvahSLYKGALFMVAGIIDhetgtrdITKLGGL---RRAMPITAAAALLAALSM 367

                        170
                 ....*....|....*
gi 354804677 252 AGLPPLTGFLPKWLI 266
Cdd:PRK12647 368 AGLPPLFGFLAKELI 382
PRK12561 PRK12561
NAD(P)H-quinone oxidoreductase subunit 4; Provisional
 55-194 1.95e-04

NAD(P)H-quinone oxidoreductase subunit 4; Provisional


Pssm-ID: 237137 [Multi-domain]  Cd Length: 504  Bit Score: 43.10  E-value: 1.95e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 354804677  55 AATKYFLTQSAASALVLFSSMTNAWHTGQ--WDITQLSHPTSGLILT--------SAIAMKLGLVPFHFWFPE------- 117
Cdd:PRK12561 138 AATKFILYTALASIFILVAGLALALSGDTftFDLAELGAKSYPLALElllyagflIAFGVKLPIFPLHTWLPDahgeasa 217

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 354804677 118 ----VLQGSPLSTG--LLLSTIMKLPPMTLLYMTSpslnptLLTTLSILSVALGGWMGLNQTQIRKILAFSSISHLGWMA 191
Cdd:PRK12561 218 pvsmILAGVLLKMGgyALIRFNVQMLPDAHVYFAP------ALAILGVVNIIYGALNAFAQDNVKRRLAYSSVSHMGFVL 291


                 ...
gi 354804677 192 III 194
Cdd:PRK12561 292 LGI 294
ND4 MTH00226
NADH dehydrogenase subunit 4; Provisional
 101-195 2.59e-04

NADH dehydrogenase subunit 4; Provisional


Pssm-ID: 214466 [Multi-domain]  Cd Length: 505  Bit Score: 42.60  E-value: 2.59e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 354804677 101 AIAMKLGLVPFHFWFPEVLQGSPLSTGLLLSTI-MKLPPMTLLYMTSP-------SLNPTLLtTLSILSVALGGWMGLNQ 172
Cdd:MTH00226 239 AMAVKIPIFPFHIWLPKAHVEAPVAGSVLLAGIlLKLGGYGLVRLSWPilplgaqNLAPAVI-AMGIVGIVYGSFATCRQ 317

                         90       100
                 ....*....|....*....|...
gi 354804677 173 TQIRKILAFSSISHLGWMAIIII 195
Cdd:MTH00226 318 IDVKRLVAYSSVAHMGLVSITLV 340
PRK06277 PRK06277
energy conserving hydrogenase EhbF;
34-268 4.36e-04

energy conserving hydrogenase EhbF;


Pssm-ID: 235767 [Multi-domain]  Cd Length: 478  Bit Score: 41.94  E-value: 4.36e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 354804677  34 EINTLAILPLISKSHHPRSIEAATKYFLTQSAASALVLFSSMTNAWHTGQWDITQ-----LSHPTSGLILTSAIAMKLGL 108
Cdd:PRK06277 130 EIAAIVQVGLVIASGTEEAYKAALKYMILGNVAGSILLLGIGFLLASTGTLNITDihnalLVNPTSPVIYGGLLLLIFGL 209

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 354804677 109 V------PFHFWFPEVLQGSPLSTGLLLSTIMK-------LPPMTLLYMTS--PSLNpTLLTTLSILSVALGGWMGLNQT 173
Cdd:PRK06277 210 LygsglpPFHTIKSDIYAKAKPFGSALLQTFSKfvlvalmLVIFKLFGGLSyfPSAQ-GVLIALSVLAMVFGVVMALLQT 288

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 354804677 174 QIRKILAFSSISHLGWMAIIIIYNPKLTL-------LNFYLYTmmtAAVFLTLNSI----KVLKLSTLMTAWTKMPSLNA 242
Cdd:PRK06277 289 DYKRLLAYHAISQGGYVAAGLALGTPLGIvagifhaINHVIYK---SALFLGAGIVsyrtKTSNLRKLGGLLPVMPVVAF 365

                        250       260
                 ....*....|....*....|....*.
gi 354804677 243 MLLLTLLSLAGLPPLTGFLPKWLIIQ 268
Cdd:PRK06277 366 MVLCAKLAISGVPPFNGFQSKLMLAQ 391
PRK12650 PRK12650
DUF4040 family protein;
98-263 5.83e-04

DUF4040 family protein;


Pssm-ID: 237158 [Multi-domain]  Cd Length: 962  Bit Score: 41.95  E-value: 5.83e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 354804677  98 LTSAIAM--------KLGLVPFHFWFPEVLQG-SPLSTGLLLSTIMKlPPMTLLYMTSPSL--NPT---LLTTLSILSVA 163
Cdd:PRK12650 206 LTTVVAVliavaaftKSAQFPFHFWLPEAMAAiTPVSAFLHAAAVVK-AGIYLLLRFSPVFhdVAVwnwLLIIVGMITAL 284

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 354804677 164 LGGWMGLNQTQIRKILAFSSISHLGWM-AIIIIYNPkltllnfylyTMMTAAVFLTLnSIKVLKLSTLMTA--------- 233
Cdd:PRK12650 285 MGAVFAVQKTDLKKLTAYSTVSQLGWIvATIGVGTP----------FALTAAVVHTL-AHALFKSSLFMLIgvvdhqagt 353

                        170       180       190
                 ....*....|....*....|....*....|....*....
gi 354804677 234 ---------WTKMPSLNAMLLLTLLSLAGLPPLTGFLPK 263
Cdd:PRK12650 354 rdirrlgslWRRMPFTFVSVTIAALSMAAVPPLFGFVSK 392
ND4 MTH00217
NADH dehydrogenase subunit 4; Provisional
 101-219 1.27e-03

NADH dehydrogenase subunit 4; Provisional


Pssm-ID: 214462 [Multi-domain]  Cd Length: 482  Bit Score: 40.42  E-value: 1.27e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 354804677 101 AIAMKLGLVPFHFWFPEVLQGSPLSTGLLLSTIM-KLPPMTLLYMTSPSLN------PTLLTTLSILSVALGGWMGLNQT 173
Cdd:MTH00217 215 SLAIKIPKIPFHIWLPQAHVEAPVAGSVILAGVLlKLGGYGFIRFSWPLLPeaseyfSPLIQTLSLLAIIYGSLTTCRQV 294

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|....*...
gi 354804677 174 QIRKILAFSSISHLGwmaiiiiynpkLTLLNFYLYTMM--TAAVFLTL 219
Cdd:MTH00217 295 DLKRIIAYSSVAHMG-----------LVTLGIFSHTIQglVAAIFLML 331
ND5 MTH00032
NADH dehydrogenase subunit 5; Provisional
 95-268 2.56e-03

NADH dehydrogenase subunit 5; Provisional


Pssm-ID: 214407 [Multi-domain]  Cd Length: 669  Bit Score: 39.56  E-value: 2.56e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 354804677  95 GLILTSAIAMKLGLVPFHFWFPEVLQGSPLSTGLLLSTIMKLPPMTLLYMTSPSLNPTLLTTLSI-----LSVALGGWMG 169
Cdd:MTH00032 228 GILLLIGCIGKSAQLGLHTWLPDAMEGPTPVSALIHAATMVTAGVFLMIRSFPLFEKAPLTLLIItifgaLTAFFAATVG 307

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 354804677 170 LNQTQIRKILAFSSISHLGWMAIIIIY--NPKLTLLNFYLYTMMTAAVFLTLNSIkVLKLSTLMTAWTKM-------PSL 240
Cdd:MTH00032 308 LVQNDLKKVIAYSTCSQLGYMVLIIGIegSHNVGLFHLVNHAFFKALLFLSAGSV-IHSTTVDEQDMRKMgglihsiPFT 386

                        170       180
                 ....*....|....*....|....*...
gi 354804677 241 NAMLLLTLLSLAGLPPLTGFLPKWLIIQ 268
Cdd:MTH00032 387 YTMMLIGSFSIMGLPYLTGFYSKDLILE 414
PRK12649 PRK12649
putative monovalent cation/H+ antiporter subunit A; Reviewed
 48-263 3.90e-03

putative monovalent cation/H+ antiporter subunit A; Reviewed


Pssm-ID: 183649 [Multi-domain]  Cd Length: 789  Bit Score: 39.04  E-value: 3.90e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 354804677  48 HHPRSIEAATKYFLTQSAASALVLFSSMTNAWHTGQWDITQLSHPTSG---------------LILTSAiAMKLGLVPFH 112
Cdd:PRK12649 156 HRPESVYGATKSLLITAGGGLFMFAGFLLLHVITGTYDIATILQDSELienikghplflitliLIFIGA-AAKSAQGPFY 234

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 354804677 113 FWFPEVLQGSPLSTGLLLSTIMKLPPMTLLYMTSPSLNPT-----LLTTLSILSVALGGWMGLNQTQIRKILAFSSISHL 187
Cdd:PRK12649 235 IWLPNAMEAPTPVSAFLHSATMVKAGVYLVARIHPIFSGTeawfiLVSGTGMITMVLAGFLAFRQTDIKAILAYSTISQL 314

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 354804677 188 GWMAIIIIYNPK------LTLLNFYLYTMMT--AAVFLTLNSI-------KVLKLSTLMTawtKMPSLNAMLLLTLLSLA 252
Cdd:PRK12649 315 AYLMTMYGYTTYhepglgVAAATFHLLNHATfkACLFLVAGIVaheaatrDIRKLGGLRK---EMPITFIVASIAALAMA 391

                        250
                 ....*....|.
gi 354804677 253 GLPPLTGFLPK 263
Cdd:PRK12649 392 GIPPLNGFLSK 402
PRK07691 PRK07691
putative monovalent cation/H+ antiporter subunit D; Reviewed
 86-268 7.71e-03

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 181085 [Multi-domain]  Cd Length: 496  Bit Score: 38.01  E-value: 7.71e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 354804677  86 ITQLSHPTSGLILTSAI------AMKLGLVPFHFWFPEVLQGSP-----LSTGLL----LSTIMKLppMTLLYMTSPSLN 150
Cdd:PRK07691 197 IAELSAGQTGLITVVAIlflfvfATKAGLFPLYFWLPGSYYAPPiaiaaLFGALLtkvgVYAIART--FTLFFSHDTSFT 274

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 354804677 151 PTLLTTLSILSVALGGWMGLNQTQIRKILAFSSISHLGWMAIIIIYNPKLTLLNFYLYTM----MTAAVFLTLNSIKVL- 225
Cdd:PRK07691 275 HYLILILALLTIIFGVIGAVAYFDIKKIIIYNIMIAVGVILVGVAMMTESGMIGAIYYLIhdmiVKAALFLLIGIMIKIt 354

                        170       180       190       200
                 ....*....|....*....|....*....|....*....|....*....
gi 354804677 226 ------KLSTLMTAWtkmPSLNAMLLLTLLSLAGLPPLTGFLPKWLIIQ 268
Cdd:PRK07691 355 gttdlkKMGGLIKRY---PVLGWMFFIAALSLAGIPPLSGFYGKFFIVE 400
ND5 MTH00020
NADH dehydrogenase subunit 5; Reviewed
 111-331 8.20e-03

NADH dehydrogenase subunit 5; Reviewed


Pssm-ID: 214400 [Multi-domain]  Cd Length: 610  Bit Score: 38.13  E-value: 8.20e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 354804677 111 FHFWFPEVLQGSPLSTGLLLSTIMKLPPMTLLYMTSP--SLNPTLLTTLSI---LSVALGGWMGLNQTQIRKILAFSSIS 185
Cdd:MTH00020 229 LHTWLPDAMEGPTPVSALIHAATMVTAGVFLLIRSSPlfEQAPLALIIVTIvgsLTVFFAATVGLVQNDLKKVIAYSTCS 308

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 354804677 186 HLGWMAIII-IYNPKLTLLNFYLYTMMTAAVFLTLNSI--------KVLKLSTLMTAwtkMPSLNAMLLLTLLSLAGLPP 256
Cdd:MTH00020 309 QLGYMVVACgLSHYSISLFHLMNHAFFKALLFLSAGSVihalsdeqDMRKMGGLISF---LPLTYIFFLIGSLSLMGFPY 385

                        170       180       190       200       210       220       230
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 354804677 257 LTGFLPKWLIIQELTKQEMIPAATLISLLSLLSLFFY-LRLAYCTTITLPPHTTNHMKQWRTGKPVNILVAILTTL 331
Cdd:MTH00020 386 LTGFYSKDLILELAFGQYYLIFAYWLGCFSALLTAFYsIRLIYLTFLSNTNLKKAVFFHLHEGDWNLLLPLGILAL 461
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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