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Conserved domains on  [gi|354682045|gb|AER29922|]
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isotocin preprohomone, partial [Xiphophorus nigrensis]

Protein Classification

Hormone_5 domain-containing protein( domain architecture ID 10445984)

Hormone_5 domain-containing protein

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
Hormone_5 pfam00184
Neurohypophysial hormones, C-terminal Domain; N-terminal Domain is in hormone5
 21-92 3.15e-27

Neurohypophysial hormones, C-terminal Domain; N-terminal Domain is in hormone5


:

Pssm-ID: 459704  Cd Length: 79  Bit Score: 94.70  E-value: 3.15e-27
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 354682045  21 RKCMSCGPGDRGRCYGPSICCGEGIGCLMGSPESAHCVEENYLLTPCQAGGRACGSEGGRCAAAGLCCDAEG 92
Cdd:pfam00184  1 RQCMSCGPGGKGRCFGPSICCGEELGCLVGTAETLRCQEENYLPSPCQAGGKPCGSNGGRCAAPGICCTSES 72
 
Name Accession Description Interval E-value
Hormone_5 pfam00184
Neurohypophysial hormones, C-terminal Domain; N-terminal Domain is in hormone5
 21-92 3.15e-27

Neurohypophysial hormones, C-terminal Domain; N-terminal Domain is in hormone5


Pssm-ID: 459704  Cd Length: 79  Bit Score: 94.70  E-value: 3.15e-27
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 354682045  21 RKCMSCGPGDRGRCYGPSICCGEGIGCLMGSPESAHCVEENYLLTPCQAGGRACGSEGGRCAAAGLCCDAEG 92
Cdd:pfam00184  1 RQCMSCGPGGKGRCFGPSICCGEELGCLVGTAETLRCQEENYLPSPCQAGGKPCGSNGGRCAAPGICCTSES 72
NH smart00003
Neurohypophysial hormones; Vasopressin/oxytocin gene family.
 21-92 6.42e-24

Neurohypophysial hormones; Vasopressin/oxytocin gene family.


Pssm-ID: 128323  Cd Length: 78  Bit Score: 86.32  E-value: 6.42e-24
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 354682045   21 RKCMSCGPGDRGRCYGPSICCGEGIGCLMGSPESAHCVEENYLLTPCQAGGRACGSeGGRCAAAGLCCDAEG 92
Cdd:smart00003  1 RQCLPCGPGGRGRCFGPSICCGEELGCYVGTPETARCQEENYLPSPCQSGGKPCGS-GGRCAAPGVCCSSES 71
 
Name Accession Description Interval E-value
Hormone_5 pfam00184
Neurohypophysial hormones, C-terminal Domain; N-terminal Domain is in hormone5
 21-92 3.15e-27

Neurohypophysial hormones, C-terminal Domain; N-terminal Domain is in hormone5


Pssm-ID: 459704  Cd Length: 79  Bit Score: 94.70  E-value: 3.15e-27
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 354682045  21 RKCMSCGPGDRGRCYGPSICCGEGIGCLMGSPESAHCVEENYLLTPCQAGGRACGSEGGRCAAAGLCCDAEG 92
Cdd:pfam00184  1 RQCMSCGPGGKGRCFGPSICCGEELGCLVGTAETLRCQEENYLPSPCQAGGKPCGSNGGRCAAPGICCTSES 72
NH smart00003
Neurohypophysial hormones; Vasopressin/oxytocin gene family.
 21-92 6.42e-24

Neurohypophysial hormones; Vasopressin/oxytocin gene family.


Pssm-ID: 128323  Cd Length: 78  Bit Score: 86.32  E-value: 6.42e-24
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 354682045   21 RKCMSCGPGDRGRCYGPSICCGEGIGCLMGSPESAHCVEENYLLTPCQAGGRACGSeGGRCAAAGLCCDAEG 92
Cdd:smart00003  1 RQCLPCGPGGRGRCFGPSICCGEELGCYVGTPETARCQEENYLPSPCQSGGKPCGS-GGRCAAPGVCCSSES 71
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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