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Conserved domains on  [gi|354586478|gb|AER28858|]
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integrase, partial [Pan troglodytes troglodytes foamy virus]

Protein Classification

integrase zinc binding domain-containing protein( domain architecture ID 16053682)

integrase zinc binding domain-containing protein;

Gene Ontology:  GO:0008270
PubMed:  11774877|20118915

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
Integrase_H2C2 pfam17921
Integrase zinc binding domain; This zinc binding domain is found in a wide variety of ...
 35-91 4.40e-15

Integrase zinc binding domain; This zinc binding domain is found in a wide variety of integrase proteins.


:

Pssm-ID: 465569 [Multi-domain]  Cd Length: 58  Bit Score: 64.96  E-value: 4.40e-15
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*...
gi 354586478   35 PPQSDRQKIVLQAHNLA-HTGREATLLKLANLYWWPNMRKDVVKQLGRCQQCLITNAS 91
Cdd:pfam17921   1 VPKSLRKEILKEAHDSGgHLGIEKTLARLRRRYWWPGMRKDVKKYVKSCETCQRRKPS 58
 
Name Accession Description Interval E-value
Integrase_H2C2 pfam17921
Integrase zinc binding domain; This zinc binding domain is found in a wide variety of ...
 35-91 4.40e-15

Integrase zinc binding domain; This zinc binding domain is found in a wide variety of integrase proteins.


Pssm-ID: 465569 [Multi-domain]  Cd Length: 58  Bit Score: 64.96  E-value: 4.40e-15
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*...
gi 354586478   35 PPQSDRQKIVLQAHNLA-HTGREATLLKLANLYWWPNMRKDVVKQLGRCQQCLITNAS 91
Cdd:pfam17921   1 VPKSLRKEILKEAHDSGgHLGIEKTLARLRRRYWWPGMRKDVKKYVKSCETCQRRKPS 58
 
Name Accession Description Interval E-value
Integrase_H2C2 pfam17921
Integrase zinc binding domain; This zinc binding domain is found in a wide variety of ...
 35-91 4.40e-15

Integrase zinc binding domain; This zinc binding domain is found in a wide variety of integrase proteins.


Pssm-ID: 465569 [Multi-domain]  Cd Length: 58  Bit Score: 64.96  E-value: 4.40e-15
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*...
gi 354586478   35 PPQSDRQKIVLQAHNLA-HTGREATLLKLANLYWWPNMRKDVVKQLGRCQQCLITNAS 91
Cdd:pfam17921   1 VPKSLRKEILKEAHDSGgHLGIEKTLARLRRRYWWPGMRKDVKKYVKSCETCQRRKPS 58
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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