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Conserved domains on  [gi|351715501|gb|EHB18420|]
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hypothetical protein GW7_21813, partial [Heterocephalus glaber]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
fliH super family cl30579
flagellar assembly protein H; Provisional
 16-65 1.57e-07

flagellar assembly protein H; Provisional


The actual alignment was detected with superfamily member PRK13386:

Pssm-ID: 237372 [Multi-domain]  Cd Length: 236  Bit Score: 46.94  E-value: 1.57e-07
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|
gi 351715501  16 KEGRKEGRKEGRKEGRKEGRKEGRKEGRKEGRKEGRKEGRKEGRKEGRKE 65
Cdd:PRK13386  45 MAGFQEGIQQGFDQGLEEGEEEGRQEGHAAGFAQGRQKGRIEGRQSIRQQ 94
 
Name Accession Description Interval E-value
fliH PRK13386
flagellar assembly protein H; Provisional
 16-65 1.57e-07

flagellar assembly protein H; Provisional


Pssm-ID: 237372 [Multi-domain]  Cd Length: 236  Bit Score: 46.94  E-value: 1.57e-07
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|
gi 351715501  16 KEGRKEGRKEGRKEGRKEGRKEGRKEGRKEGRKEGRKEGRKEGRKEGRKE 65
Cdd:PRK13386  45 MAGFQEGIQQGFDQGLEEGEEEGRQEGHAAGFAQGRQKGRIEGRQSIRQQ 94
2A1904 TIGR00927
K+-dependent Na+/Ca+ exchanger; [Transport and binding proteins, Cations and iron carrying ...
 1-97 6.70e-04

K+-dependent Na+/Ca+ exchanger; [Transport and binding proteins, Cations and iron carrying compounds]


Pssm-ID: 273344 [Multi-domain]  Cd Length: 1096  Bit Score: 36.90  E-value: 6.70e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 351715501     1 GERKEGRKVGRKEGRKEGRKEGRKEGRKEGRKEGRKEGRKEGRKEGRKEGRKEGRKEGR-KEGRKEGRKEGRKEGVRGEG 79
Cdd:TIGR00927  642 GERTGEEGERPTEAEGENGEESGGEAEQEGETETKGENESEGEIPAERKGEQEGEGEIEaKEADHKGETEAEEVEHEGET 721

                           90
                   ....*....|....*...
gi 351715501    80 EGGDREGERQRQRQGEGE 97
Cdd:TIGR00927  722 EAEGTEDEGEIETGEEGE 739
RpnC COG5464
Recombination-promoting DNA endonuclease RpnC/YadD [Replication, recombination and repair];
13-41 2.20e-03

Recombination-promoting DNA endonuclease RpnC/YadD [Replication, recombination and repair];


Pssm-ID: 444215 [Multi-domain]  Cd Length: 301  Bit Score: 35.32  E-value: 2.20e-03
                         10        20
                 ....*....|....*....|....*....
gi 351715501  13 EGRKEGRKEGRKEGRkEGRKEGRKEGRKE 41
Cdd:COG5464  237 ELLQEGREEGRQEGR-EGRQEGRQEGKLE 264
 
Name Accession Description Interval E-value
fliH PRK13386
flagellar assembly protein H; Provisional
 16-65 1.57e-07

flagellar assembly protein H; Provisional


Pssm-ID: 237372 [Multi-domain]  Cd Length: 236  Bit Score: 46.94  E-value: 1.57e-07
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|
gi 351715501  16 KEGRKEGRKEGRKEGRKEGRKEGRKEGRKEGRKEGRKEGRKEGRKEGRKE 65
Cdd:PRK13386  45 MAGFQEGIQQGFDQGLEEGEEEGRQEGHAAGFAQGRQKGRIEGRQSIRQQ 94
fliH PRK13386
flagellar assembly protein H; Provisional
 20-69 1.57e-07

flagellar assembly protein H; Provisional


Pssm-ID: 237372 [Multi-domain]  Cd Length: 236  Bit Score: 46.94  E-value: 1.57e-07
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|
gi 351715501  20 KEGRKEGRKEGRKEGRKEGRKEGRKEGRKEGRKEGRKEGRKEGRKEGRKE 69
Cdd:PRK13386  45 MAGFQEGIQQGFDQGLEEGEEEGRQEGHAAGFAQGRQKGRIEGRQSIRQQ 94
fliH PRK13386
flagellar assembly protein H; Provisional
 12-61 1.57e-07

flagellar assembly protein H; Provisional


Pssm-ID: 237372 [Multi-domain]  Cd Length: 236  Bit Score: 46.94  E-value: 1.57e-07
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|
gi 351715501  12 KEGRKEGRKEGRKEGRKEGRKEGRKEGRKEGRKEGRKEGRKEGRKEGRKE 61
Cdd:PRK13386  45 MAGFQEGIQQGFDQGLEEGEEEGRQEGHAAGFAQGRQKGRIEGRQSIRQQ 94
fliH PRK13386
flagellar assembly protein H; Provisional
 10-57 4.89e-07

flagellar assembly protein H; Provisional


Pssm-ID: 237372 [Multi-domain]  Cd Length: 236  Bit Score: 45.40  E-value: 4.89e-07
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|....*...
gi 351715501  10 GRKEGRKEGRKEGRKEGRKEGRKEGRKEGRKEGRKEGRKEGRKEGRKE 57
Cdd:PRK13386  47 GFQEGIQQGFDQGLEEGEEEGRQEGHAAGFAQGRQKGRIEGRQSIRQQ 94
fliH PRK13386
flagellar assembly protein H; Provisional
 4-53 1.99e-06

flagellar assembly protein H; Provisional


Pssm-ID: 237372 [Multi-domain]  Cd Length: 236  Bit Score: 43.86  E-value: 1.99e-06
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|
gi 351715501   4 KEGRKVGRKEGRKEGRKEGRKEGRKEGRKEGRKEGRKEGRKEGRKEGRKE 53
Cdd:PRK13386  45 MAGFQEGIQQGFDQGLEEGEEEGRQEGHAAGFAQGRQKGRIEGRQSIRQQ 94
fliH PRK05687
flagellar assembly protein FliH;
11-53 2.53e-06

flagellar assembly protein FliH;


Pssm-ID: 235562 [Multi-domain]  Cd Length: 246  Bit Score: 43.77  E-value: 2.53e-06
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|...
gi 351715501  11 RKEGRKEGRKEGRKEGRKEGRKEGRKEGRKEGRKEGRKEGRKE 53
Cdd:PRK05687  65 RQQAHEEGFAAGKAEGRAEGYEAGYQEGLAQGLEQGLAEGQAQ 107
fliH PRK05687
flagellar assembly protein FliH;
15-57 2.53e-06

flagellar assembly protein FliH;


Pssm-ID: 235562 [Multi-domain]  Cd Length: 246  Bit Score: 43.77  E-value: 2.53e-06
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|...
gi 351715501  15 RKEGRKEGRKEGRKEGRKEGRKEGRKEGRKEGRKEGRKEGRKE 57
Cdd:PRK05687  65 RQQAHEEGFAAGKAEGRAEGYEAGYQEGLAQGLEQGLAEGQAQ 107
fliH PRK05687
flagellar assembly protein FliH;
19-61 2.53e-06

flagellar assembly protein FliH;


Pssm-ID: 235562 [Multi-domain]  Cd Length: 246  Bit Score: 43.77  E-value: 2.53e-06
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|...
gi 351715501  19 RKEGRKEGRKEGRKEGRKEGRKEGRKEGRKEGRKEGRKEGRKE 61
Cdd:PRK05687  65 RQQAHEEGFAAGKAEGRAEGYEAGYQEGLAQGLEQGLAEGQAQ 107
fliH PRK05687
flagellar assembly protein FliH;
23-65 2.53e-06

flagellar assembly protein FliH;


Pssm-ID: 235562 [Multi-domain]  Cd Length: 246  Bit Score: 43.77  E-value: 2.53e-06
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|...
gi 351715501  23 RKEGRKEGRKEGRKEGRKEGRKEGRKEGRKEGRKEGRKEGRKE 65
Cdd:PRK05687  65 RQQAHEEGFAAGKAEGRAEGYEAGYQEGLAQGLEQGLAEGQAQ 107
fliH PRK05687
flagellar assembly protein FliH;
27-69 2.53e-06

flagellar assembly protein FliH;


Pssm-ID: 235562 [Multi-domain]  Cd Length: 246  Bit Score: 43.77  E-value: 2.53e-06
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|...
gi 351715501  27 RKEGRKEGRKEGRKEGRKEGRKEGRKEGRKEGRKEGRKEGRKE 69
Cdd:PRK05687  65 RQQAHEEGFAAGKAEGRAEGYEAGYQEGLAQGLEQGLAEGQAQ 107
fliH PRK05687
flagellar assembly protein FliH;
31-71 4.27e-06

flagellar assembly protein FliH;


Pssm-ID: 235562 [Multi-domain]  Cd Length: 246  Bit Score: 43.00  E-value: 4.27e-06
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|.
gi 351715501  31 RKEGRKEGRKEGRKEGRKEGRKEGRKEGRKEGRKEGRKEGR 71
Cdd:PRK05687  65 RQQAHEEGFAAGKAEGRAEGYEAGYQEGLAQGLEQGLAEGQ 105
fliH PRK05687
flagellar assembly protein FliH;
7-49 1.38e-05

flagellar assembly protein FliH;


Pssm-ID: 235562 [Multi-domain]  Cd Length: 246  Bit Score: 41.45  E-value: 1.38e-05
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|...
gi 351715501   7 RKVGRKEGRKEGRKEGRKEGRKEGRKEGRKEGRKEGRKEGRKE 49
Cdd:PRK05687  65 RQQAHEEGFAAGKAEGRAEGYEAGYQEGLAQGLEQGLAEGQAQ 107
fliH PRK05687
flagellar assembly protein FliH;
3-45 6.10e-05

flagellar assembly protein FliH;


Pssm-ID: 235562 [Multi-domain]  Cd Length: 246  Bit Score: 39.91  E-value: 6.10e-05
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|...
gi 351715501   3 RKEGRKVGRKEGRKEGRKEGRKEGRKEGRKEGRKEGRKEGRKE 45
Cdd:PRK05687  65 RQQAHEEGFAAGKAEGRAEGYEAGYQEGLAQGLEQGLAEGQAQ 107
2A1904 TIGR00927
K+-dependent Na+/Ca+ exchanger; [Transport and binding proteins, Cations and iron carrying ...
 1-97 6.70e-04

K+-dependent Na+/Ca+ exchanger; [Transport and binding proteins, Cations and iron carrying compounds]


Pssm-ID: 273344 [Multi-domain]  Cd Length: 1096  Bit Score: 36.90  E-value: 6.70e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 351715501     1 GERKEGRKVGRKEGRKEGRKEGRKEGRKEGRKEGRKEGRKEGRKEGRKEGRKEGRKEGR-KEGRKEGRKEGRKEGVRGEG 79
Cdd:TIGR00927  642 GERTGEEGERPTEAEGENGEESGGEAEQEGETETKGENESEGEIPAERKGEQEGEGEIEaKEADHKGETEAEEVEHEGET 721

                           90
                   ....*....|....*...
gi 351715501    80 EGGDREGERQRQRQGEGE 97
Cdd:TIGR00927  722 EAEGTEDEGEIETGEEGE 739
RpnC COG5464
Recombination-promoting DNA endonuclease RpnC/YadD [Replication, recombination and repair];
13-41 2.20e-03

Recombination-promoting DNA endonuclease RpnC/YadD [Replication, recombination and repair];


Pssm-ID: 444215 [Multi-domain]  Cd Length: 301  Bit Score: 35.32  E-value: 2.20e-03
                         10        20
                 ....*....|....*....|....*....
gi 351715501  13 EGRKEGRKEGRKEGRkEGRKEGRKEGRKE 41
Cdd:COG5464  237 ELLQEGREEGRQEGR-EGRQEGRQEGKLE 264
RpnC COG5464
Recombination-promoting DNA endonuclease RpnC/YadD [Replication, recombination and repair];
29-57 2.20e-03

Recombination-promoting DNA endonuclease RpnC/YadD [Replication, recombination and repair];


Pssm-ID: 444215 [Multi-domain]  Cd Length: 301  Bit Score: 35.32  E-value: 2.20e-03
                         10        20
                 ....*....|....*....|....*....
gi 351715501  29 EGRKEGRKEGRKEGRkEGRKEGRKEGRKE 57
Cdd:COG5464  237 ELLQEGREEGRQEGR-EGRQEGRQEGKLE 264
PRK12678 PRK12678
transcription termination factor Rho; Provisional
 1-96 2.45e-03

transcription termination factor Rho; Provisional


Pssm-ID: 237171 [Multi-domain]  Cd Length: 672  Bit Score: 35.26  E-value: 2.45e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 351715501   1 GERKEGRKVGRKEGRKEGRKEGRKEGRKEGRKEGRKEGRKEGRKEGRKEGRKEGRKEGRKEGRKEGRKEGRKEGVRGEGE 80
Cdd:PRK12678 143 RKAGEGGEQPATEARADAAERTEEEERDERRRRGDREDRQAEAERGERGRREERGRDGDDRDRRDRREQGDRREERGRRD 222

                         90
                 ....*....|....*.
gi 351715501  81 GGDREGERQRQRQGEG 96
Cdd:PRK12678 223 GGDRRGRRRRRDRRDA 238
RpnC COG5464
Recombination-promoting DNA endonuclease RpnC/YadD [Replication, recombination and repair];
11-37 2.81e-03

Recombination-promoting DNA endonuclease RpnC/YadD [Replication, recombination and repair];


Pssm-ID: 444215 [Multi-domain]  Cd Length: 301  Bit Score: 34.94  E-value: 2.81e-03
                         10        20
                 ....*....|....*....|....*..
gi 351715501  11 RKEGRKEGRKEGRkEGRKEGRKEGRKE 37
Cdd:COG5464  239 LQEGREEGRQEGR-EGRQEGRQEGKLE 264
RpnC COG5464
Recombination-promoting DNA endonuclease RpnC/YadD [Replication, recombination and repair];
45-71 5.39e-03

Recombination-promoting DNA endonuclease RpnC/YadD [Replication, recombination and repair];


Pssm-ID: 444215 [Multi-domain]  Cd Length: 301  Bit Score: 34.17  E-value: 5.39e-03
                         10        20
                 ....*....|....*....|....*..
gi 351715501  45 EGRKEGRKEGRKEGRkEGRKEGRKEGR 71
Cdd:COG5464  237 ELLQEGREEGRQEGR-EGRQEGRQEGK 262
2A1904 TIGR00927
K+-dependent Na+/Ca+ exchanger; [Transport and binding proteins, Cations and iron carrying ...
 1-97 8.51e-03

K+-dependent Na+/Ca+ exchanger; [Transport and binding proteins, Cations and iron carrying compounds]


Pssm-ID: 273344 [Multi-domain]  Cd Length: 1096  Bit Score: 33.82  E-value: 8.51e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 351715501     1 GERKEGRKVGRKEGrKEGRKEGRKEGRKEGRKEGRKEgrKEGRKEGRKEGRKEGRKEGRKEGRKEGRKEGRKEGVRGEGE 80
Cdd:TIGR00927  633 GDVAEAEHTGERTG-EEGERPTEAEGENGEESGGEAE--QEGETETKGENESEGEIPAERKGEQEGEGEIEAKEADHKGE 709

                           90
                   ....*....|....*..
gi 351715501    81 GGDREGERQRQRQGEGE 97
Cdd:TIGR00927  710 TEAEEVEHEGETEAEGT 726
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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