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Conserved domains on  [gi|351650711|gb|AEQ58806|]
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cytochrome b, partial (mitochondrion) [Stenobothrus nigromaculatus]

Protein Classification

cytochrome b( domain architecture ID 999997)

cytochrome b is a component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex) that is part of the mitochondrial respiratory chain; contributes to the generation of a proton gradient across the mitochondrial membrane that is then used for ATP synthesis

CATH:  1.20.810.10
Gene Symbol:  CYTB
Gene Ontology:  GO:0009055|GO:0046872|GO:0022904|GO:0005743|GO:0020037
PubMed:  2509716|8329437
SCOP:  4002208

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
CYTB super family cl33360
cytochrome b; Provisional
 1-83 1.96e-46

cytochrome b; Provisional


The actual alignment was detected with superfamily member MTH00156:

Pssm-ID: 214440 [Multi-domain]  Cd Length: 356  Bit Score: 151.09  E-value: 1.96e-46
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 351650711   1 VWGGFAVDNATLNRFFTFHFVLPFVIAAMAAIHLFFLHQTGSNNPIGLNSNIDKIPFHPYFTFKDSITFVIMTSLLIFLC 80
Cdd:MTH00156 154 IWGGFSVDNATLTRFFTFHFLLPFIILAMVMIHLLFLHQTGSNNPLGLNSNIDKIPFHPYFTFKDLVGFIIMLMLLILLT 233


                 ...
gi 351650711  81 LIN 83
Cdd:MTH00156 234 LIN 236
 
Name Accession Description Interval E-value
CYTB MTH00156
cytochrome b; Provisional
 1-83 1.96e-46

cytochrome b; Provisional


Pssm-ID: 214440 [Multi-domain]  Cd Length: 356  Bit Score: 151.09  E-value: 1.96e-46
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 351650711   1 VWGGFAVDNATLNRFFTFHFVLPFVIAAMAAIHLFFLHQTGSNNPIGLNSNIDKIPFHPYFTFKDSITFVIMTSLLIFLC 80
Cdd:MTH00156 154 IWGGFSVDNATLTRFFTFHFLLPFIILAMVMIHLLFLHQTGSNNPLGLNSNIDKIPFHPYFTFKDLVGFIIMLMLLILLT 233


                 ...
gi 351650711  81 LIN 83
Cdd:MTH00156 234 LIN 236
QcrB/PetB COG1290
Cytochrome b subunit of the bc complex [Energy production and conversion];
1-79 3.81e-19

Cytochrome b subunit of the bc complex [Energy production and conversion];


Pssm-ID: 440901 [Multi-domain]  Cd Length: 393  Bit Score: 79.45  E-value: 3.81e-19
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 351650711   1 VWGGFAVDNATLNRFFTFH-FVLPFVIAAMAAIHLFFLHQTGSNNPIG----LNSNIDKIPFHPYFTFKDSITFVIMTSL 75
Cdd:COG1290  175 LFGGEFPGDATLNRFFALHvLLLPALLLALVVLHLWLLHRHGHNNPPGperkKTEKVDGVPFHPYYTVKDGFGFFVFLGV 254


                 ....
gi 351650711  76 LIFL 79
Cdd:COG1290  255 FALL 258
Cytochrom_B_N_2 pfam13631
Cytochrome b(N-terminal)/b6/petB;
1-83 1.48e-18

Cytochrome b(N-terminal)/b6/petB;


Pssm-ID: 433364  Cd Length: 169  Bit Score: 74.59  E-value: 1.48e-18
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 351650711    1 VWGGFAVDNATLNRFFTFHF-VLPFVIAAMAAIHLFFLHQTGSNNPIGLNSNIDKIPFHPYFTFKDSITFVIMTSLLIFL 79
Cdd:pfam13631  79 LFGGPFPGTATIPRFYALHIlLLPGLILALIVAHLLLVEKHGQFPPPGTEKNVVGVPFWPVFAVKMLLFFLITVALLIGL 158


                  ....
gi 351650711   80 CLIN 83
Cdd:pfam13631 159 AQIN 162
Cytochrome_b_N cd00284
Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit ...
 1-43 1.64e-12

Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit mitochondrial respiratory enzyme. Cytochrome b spans the mitochondrial membrane with 8 transmembrane helices (A-H) in eukaryotes. In plants and cyanobacteria, cytochrome b6 is analogous to eukaryote cytochrome b, containing two chains: helices A-D are encoded by the petB gene and helices E-H are encoded by the petD gene in these organisms. Cytochrome b/b6 contains two bound hemes and two ubiquinol/ubiquinone binding sites. The C-terminal portion of cytochrome b is described in a separate CD.


Pssm-ID: 238176  Cd Length: 200  Bit Score: 59.30  E-value: 1.64e-12
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|...
gi 351650711   1 VWGGFAVDNATLNRFFTFHFVLPFVIAAMAAIHLFFLHQTGSN 43
Cdd:cd00284  158 LWGGFSVDNATLTRFFALHFLLPFIIAVIVILHLLFLHEQGSS 200
 
Name Accession Description Interval E-value
CYTB MTH00156
cytochrome b; Provisional
 1-83 1.96e-46

cytochrome b; Provisional


Pssm-ID: 214440 [Multi-domain]  Cd Length: 356  Bit Score: 151.09  E-value: 1.96e-46
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 351650711   1 VWGGFAVDNATLNRFFTFHFVLPFVIAAMAAIHLFFLHQTGSNNPIGLNSNIDKIPFHPYFTFKDSITFVIMTSLLIFLC 80
Cdd:MTH00156 154 IWGGFSVDNATLTRFFTFHFLLPFIILAMVMIHLLFLHQTGSNNPLGLNSNIDKIPFHPYFTFKDLVGFIIMLMLLILLT 233


                 ...
gi 351650711  81 LIN 83
Cdd:MTH00156 234 LIN 236
CYTB MTH00145
cytochrome b; Provisional
 1-81 6.36e-40

cytochrome b; Provisional


Pssm-ID: 177203 [Multi-domain]  Cd Length: 379  Bit Score: 134.65  E-value: 6.36e-40
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 351650711   1 VWGGFAVDNATLNRFFTFHFVLPFVIAAMAAIHLFFLHQTGSNNPIGLNSNIDKIPFHPYFTFKDSITFVIMTSLLIFLC 80
Cdd:MTH00145 165 VWGGFSVGNATLKRFFSLHFLLPFVILGLSVLHLLFLHETGSNNPLGLDSDGDKVPFHPYYTIKDLVGFVVLLFLLVFLV 244


                 .
gi 351650711  81 L 81
Cdd:MTH00145 245 L 245
CYTB MTH00119
cytochrome b; Provisional
 1-81 1.44e-39

cytochrome b; Provisional


Pssm-ID: 214425 [Multi-domain]  Cd Length: 380  Bit Score: 133.87  E-value: 1.44e-39
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 351650711   1 VWGGFAVDNATLNRFFTFHFVLPFVIAAMAAIHLFFLHQTGSNNPIGLNSNIDKIPFHPYFTFKDSITFVIMTSLLIFLC 80
Cdd:MTH00119 165 IWGGFSVDNPTLTRFFALHFLLPFLIAGLTLIHLLFLHETGSNNPLGLNSNTDKIPFHPYFSYKDLLGLTLMLTLLLTLA 244


                 .
gi 351650711  81 L 81
Cdd:MTH00119 245 L 245
CYTB MTH00131
cytochrome b; Provisional
 1-81 2.42e-39

cytochrome b; Provisional


Pssm-ID: 177189 [Multi-domain]  Cd Length: 380  Bit Score: 133.24  E-value: 2.42e-39
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 351650711   1 VWGGFAVDNATLNRFFTFHFVLPFVIAAMAAIHLFFLHQTGSNNPIGLNSNIDKIPFHPYFTFKDSITFVIMTSLLIFLC 80
Cdd:MTH00131 164 IWGGFSVDNATLTRFFAFHFLFPFVIAAATILHLLFLHETGSNNPLGLNSDADKISFHPYFSYKDLLGFAILLLALTSLA 243


                 .
gi 351650711  81 L 81
Cdd:MTH00131 244 L 244
CYTB MTH00074
cytochrome b; Provisional
 1-83 4.99e-39

cytochrome b; Provisional


Pssm-ID: 177145 [Multi-domain]  Cd Length: 380  Bit Score: 132.50  E-value: 4.99e-39
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 351650711   1 VWGGFAVDNATLNRFFTFHFVLPFVIAAMAAIHLFFLHQTGSNNPIGLNSNIDKIPFHPYFTFKDSITFVIMTSLLIFLC 80
Cdd:MTH00074 165 IWGGFSVDKATLTRFFAFHFLLPFLIAGASIIHLLFLHETGSNNPTGLNSNPDKVPFHPYFSYKDLLGFLIMLTALALLS 244


                 ...
gi 351650711  81 LIN 83
Cdd:MTH00074 245 LFS 247
CYTB MTH00191
cytochrome b; Provisional
 1-81 9.04e-39

cytochrome b; Provisional


Pssm-ID: 177239 [Multi-domain]  Cd Length: 365  Bit Score: 131.58  E-value: 9.04e-39
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 351650711   1 VWGGFAVDNATLNRFFTFHFVLPFVIAAMAAIHLFFLHQTGSNNPIGLNSNIDKIPFHPYFTFKDSITFVIMTSLLIFLC 80
Cdd:MTH00191 161 LWGGFSVDNATLTRFFTFHFLLPFLIAALSLIHLLFLHETGSNNPLGLNSDSDKIPFHPYFSYKDILGFFILLFLLLFLV 240


                 .
gi 351650711  81 L 81
Cdd:MTH00191 241 L 241
CYTB MTH00100
cytochrome b; Provisional
 1-81 4.35e-37

cytochrome b; Provisional


Pssm-ID: 177162 [Multi-domain]  Cd Length: 379  Bit Score: 127.45  E-value: 4.35e-37
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 351650711   1 VWGGFAVDNATLNRFFTFHFVLPFVIAAMAAIHLFFLHQTGSNNPIGLNSNIDKIPFHPYFTFKDSITFVIMTSLLIFLC 80
Cdd:MTH00100 164 IWGGFSVDKATLTRFFAFHFILPFIITALAMVHLLFLHETGSNNPSGIPSDSDKIPFHPYYTIKDILGLLLLILTLMLLV 243


                 .
gi 351650711  81 L 81
Cdd:MTH00100 244 L 244
CYTB MTH00016
cytochrome b; Validated
 1-83 2.00e-35

cytochrome b; Validated


Pssm-ID: 177102 [Multi-domain]  Cd Length: 378  Bit Score: 122.86  E-value: 2.00e-35
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 351650711   1 VWGGFAVDNATLNRFFTFHFVLPFVIAAMAAIHLFFLHQTGSNNPIGLNSNIDKIPFHPYFTFKDSITFVIMTSLLIFLC 80
Cdd:MTH00016 165 LWGGFSVDNATLTRFFALHFLLPFVIAALSMIHLLFLHQTGSNNPLGVNSNSDKVPFHPYYTSKDIVGFIVMLFLLLSVV 244


                 ...
gi 351650711  81 LIN 83
Cdd:MTH00016 245 LLW 247
CYTB MTH00034
cytochrome b; Validated
 1-82 1.64e-33

cytochrome b; Validated


Pssm-ID: 177109 [Multi-domain]  Cd Length: 379  Bit Score: 117.88  E-value: 1.64e-33
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 351650711   1 VWGGFAVDNATLNRFFTFHFVLPFVIAAMAAIHLFFLHQTGSNNPIGLNSNIDKIPFHPYFTFKDSITFVIMTSLLIFLC 80
Cdd:MTH00034 164 IWGGFSVDNATLTRFFAFHFLFPFIIAALSIIHLLFLHQTGSNNPTGLNSNYDKVPFHTYFTTKDLVGFLILFAALSSLA 243


                 ..
gi 351650711  81 LI 82
Cdd:MTH00034 244 LL 245
CYTB MTH00224
cytochrome b; Provisional
 1-81 1.31e-30

cytochrome b; Provisional


Pssm-ID: 164767 [Multi-domain]  Cd Length: 379  Bit Score: 110.40  E-value: 1.31e-30
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 351650711   1 VWGGFAVDNATLNRFFTFHFVLPFVIAAMAAIHLFFLHQTGSNNPIGLNSNIDKIPFHPYFTFKDSITFVIMTSLLIFLC 80
Cdd:MTH00224 165 IWGGFAVDNATLNRFFSFHFLLPFAIMGATILHIMFLHQTGSNNPIGINADSARIPFHPYYSIKDALGYLIAILLLSLMV 244


                 .
gi 351650711  81 L 81
Cdd:MTH00224 245 L 245
CYTB MTH00053
cytochrome b; Provisional
 1-79 2.61e-28

cytochrome b; Provisional


Pssm-ID: 164624 [Multi-domain]  Cd Length: 381  Bit Score: 104.02  E-value: 2.61e-28
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 351650711   1 VWGGFAVDNATLNRFFTFHFVLPFVIAAMAAIHLFFLHQTGSNNPIGLNSNIDKIPFHPYFTFKD---SITFVIMTSLLI 77
Cdd:MTH00053 165 VWGGFSVSNATLNRFYSLHYLLPFILAGLALVHLIALHEDGSNNPIGVRSDIDKIPFHYYYVLKDlygAVILLIILSIIV 244


                 ..
gi 351650711  78 FL 79
Cdd:MTH00053 245 FL 246
CYTB MTH00022
cytochrome b; Validated
 1-80 1.61e-26

cytochrome b; Validated


Pssm-ID: 164595 [Multi-domain]  Cd Length: 379  Bit Score: 99.39  E-value: 1.61e-26
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 351650711   1 VWGGFAVDNATLNRFFTFHFVLPFVIAAMAAIHLFFLHQTGSNNPIGLNSNIDKIPFHPYFTFKDSITFVIMTSLLIFLC 80
Cdd:MTH00022 163 VWGGFSVSNATLNRFFSLHFLFPFILAFLVIVHLIYLHVDGSNNPIGLNSSVDKVSFHVYYTSKDWYGIVVLFFLLSFIV 242
CYTB MTH00033
cytochrome b; Provisional
 1-79 2.06e-19

cytochrome b; Provisional


Pssm-ID: 133672 [Multi-domain]  Cd Length: 383  Bit Score: 79.98  E-value: 2.06e-19
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 351650711   1 VWGGFAVDNATLNRFFTFHFVLPFVIAAMAAIHLFFLHQTGSNNPIGLNSNIDKIPFHPYFTFKDSITFVIMTSLLIFL 79
Cdd:MTH00033 161 IWGGFSVSNCTLNRFFSLHYLLPFVLVGLVLAHLLTLHEKGSNEPLGLVGLSDRTAFHVYFTIKDILGFLILFGVFVII 239
QcrB/PetB COG1290
Cytochrome b subunit of the bc complex [Energy production and conversion];
1-79 3.81e-19

Cytochrome b subunit of the bc complex [Energy production and conversion];


Pssm-ID: 440901 [Multi-domain]  Cd Length: 393  Bit Score: 79.45  E-value: 3.81e-19
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 351650711   1 VWGGFAVDNATLNRFFTFH-FVLPFVIAAMAAIHLFFLHQTGSNNPIG----LNSNIDKIPFHPYFTFKDSITFVIMTSL 75
Cdd:COG1290  175 LFGGEFPGDATLNRFFALHvLLLPALLLALVVLHLWLLHRHGHNNPPGperkKTEKVDGVPFHPYYTVKDGFGFFVFLGV 254


                 ....
gi 351650711  76 LIFL 79
Cdd:COG1290  255 FALL 258
Cytochrom_B_N_2 pfam13631
Cytochrome b(N-terminal)/b6/petB;
1-83 1.48e-18

Cytochrome b(N-terminal)/b6/petB;


Pssm-ID: 433364  Cd Length: 169  Bit Score: 74.59  E-value: 1.48e-18
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 351650711    1 VWGGFAVDNATLNRFFTFHF-VLPFVIAAMAAIHLFFLHQTGSNNPIGLNSNIDKIPFHPYFTFKDSITFVIMTSLLIFL 79
Cdd:pfam13631  79 LFGGPFPGTATIPRFYALHIlLLPGLILALIVAHLLLVEKHGQFPPPGTEKNVVGVPFWPVFAVKMLLFFLITVALLIGL 158


                  ....
gi 351650711   80 CLIN 83
Cdd:pfam13631 159 AQIN 162
CYTB MTH00086
cytochrome b; Provisional
 1-78 2.01e-16

cytochrome b; Provisional


Pssm-ID: 177151 [Multi-domain]  Cd Length: 355  Bit Score: 71.51  E-value: 2.01e-16
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 351650711   1 VWGGFAVDNATLNRFFTFHFVLPFVIAAMAAIHLFFLHQTGSNNPIGLNSNIDKIPFHPYFTFKDSITFVIMTSLLIF 78
Cdd:MTH00086 153 IWGGFGVSSATLKFFFVLHFLLPWGLLVLVLFHLIFLHSTGSTSSLYCHGDYDKICFGPEYWNKDAYNIIFWLVFIIF 230
CYTB MTH00046
cytochrome b; Validated
 1-83 4.31e-16

cytochrome b; Validated


Pssm-ID: 177121 [Multi-domain]  Cd Length: 355  Bit Score: 70.78  E-value: 4.31e-16
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 351650711   1 VWGGFAVDNATLNRFFTFHFVLPFVIAAMAAIHLFFLHQTGSNNPIGLNSNI-DKIPFHPYFTFKDSITFVIMTSLLIFL 79
Cdd:MTH00046 155 IVGGFSVTGVTLVRVFSVHICLGFVILGLMVVHLFYLHKSGSSNPLFSSNGYsDVVYFHSYFTVKDLFLFMVVCSLLVFW 234


                 ....
gi 351650711  80 CLIN 83
Cdd:MTH00046 235 LFVS 238
Cytochrome_b_N cd00284
Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit ...
 1-43 1.64e-12

Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit mitochondrial respiratory enzyme. Cytochrome b spans the mitochondrial membrane with 8 transmembrane helices (A-H) in eukaryotes. In plants and cyanobacteria, cytochrome b6 is analogous to eukaryote cytochrome b, containing two chains: helices A-D are encoded by the petB gene and helices E-H are encoded by the petD gene in these organisms. Cytochrome b/b6 contains two bound hemes and two ubiquinol/ubiquinone binding sites. The C-terminal portion of cytochrome b is described in a separate CD.


Pssm-ID: 238176  Cd Length: 200  Bit Score: 59.30  E-value: 1.64e-12
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|...
gi 351650711   1 VWGGFAVDNATLNRFFTFHFVLPFVIAAMAAIHLFFLHQTGSN 43
Cdd:cd00284  158 LWGGFSVDNATLTRFFALHFLLPFIIAVIVILHLLFLHEQGSS 200
Cytochrome_B pfam00033
Cytochrome b/b6/petB;
1-41 1.05e-10

Cytochrome b/b6/petB;


Pssm-ID: 306530  Cd Length: 189  Bit Score: 54.70  E-value: 1.05e-10
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|.
gi 351650711    1 VWGGFAVDNATLNRFFTFHFVLPFVIAAMAAIHLFFLHQTG 41
Cdd:pfam00033 149 IWGSFSVDQATLTRFFSLHFLLPFILAILMLLHLLFLHETG 189
cytochrome_b_C cd00290
Cytochrome b(C-terminus)/b6/petD: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit ...
 44-83 5.36e-04

Cytochrome b(C-terminus)/b6/petD: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit mitochondrial respiratory enzyme. Cytochrome b spans the mitochondrial membrane with 8 transmembrane helices (A-H) in eukaryotes. In plants and cyanobacteria, cytochrome b6 is analogous to eukaryote cytochrome b, containing two chains: helices A-D are encoded by the petB gene and helices E-H are encoded by the petD gene in these organisms. Cytochrome b/b6 contains two bound hemes and two ubiquinol/ubiquinone binding sites. The C-terminal domain is involved in forming the ubiquinol/ubiquinone binding sites, but not the heme binding sites. The N-terminal portion of cytochrome b, which contains both heme binding sites, is described in a separate CD.


Pssm-ID: 238179 [Multi-domain]  Cd Length: 147  Bit Score: 36.08  E-value: 5.36e-04
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|
gi 351650711  44 NPIGLNSNIDKIPFHPYFTFKDSITFVIMTSLLIFLCLIN 83
Cdd:cd00290    1 NPLGLASDMDKISFHPYFWPKDLLGAFPILIIFMILVFYA 40
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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