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Conserved domains on  [gi|350430919|gb|AEQ28427|]
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NADH dehydrogenase subunit 2, partial (mitochondrion) [Hapalopsittaca pyrrhops]

Protein Classification

NADH dehydrogenase subunit 2( domain architecture ID 11475904)

NADH dehydrogenase subunit 2 is the core subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I), which functions in the transfer of electrons from NADH to the respiratory chain

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
ND2 MTH00112
NADH dehydrogenase subunit 2; Provisional
 1-340 4.55e-138

NADH dehydrogenase subunit 2; Provisional


:

Pssm-ID: 214423 [Multi-domain]  Cd Length: 346  Bit Score: 395.35  E-value: 4.55e-138
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 350430919   1 LISTLSILLGTTLTITSNHWATAWAGLEINTLSIIPMISKSHHPRAIEAATKYFLVQATASTLVLFSSTANAQHTGQWDI 80
Cdd:MTH00112   7 LIITTSLILGTIITISSNHWLMAWTGLEINTLAIIPLISKPHHPRATEAATKYFLTQAAASALILFSSTTNAWNTGQWDI 86

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 350430919  81 TQLTYPPACALLTIAIAIKLGLTPFHFWFPEVLQGSSLTTAMLLSTVMKLPPTTLLLTSSHSLNPTLLTTMSIMSIALGG 160
Cdd:MTH00112  87 TQLTNPTSCTLLTLALAMKLGLAPFHFWLPEVLQGSTTTTALILSTWQKLAPLTLLLMTSNSLNPTLLLTLAILSTLIGG 166

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 350430919 161 WMGLNQTQTRKIMAFSSISHLGWMMTTITYNPKLTLLAFLTYTLMTSSIFLTMNTTNTLKLSTLMIAWTKAPMLSTTLML 240
Cdd:MTH00112 167 WGGLNQTQLRKIMAFSSIAHLGWMIAIITYSPKLTLLTFYIYILMTTPMFLTLNTTSTKTLKDMMTSWTKSPTLNTTLML 246

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 350430919 241 TLLSLSGLPPLTGFLPKWLIMQELIKQETTTTATTISTLSLLGLFFYLRLAYCSTITLPPNPSSKTKQWSTKSSTNPLIS 320
Cdd:MTH00112 247 TLLSLAGLPPLTGFMPKWLILQELTKQNMTPTATIMAMLSLLSLFFYLRLTYISTITLPPNTTNMMMKWRTKPKKNTLTA 326

                        330       340
                 ....*....|....*....|
gi 350430919 321 MLTSLSISLLPLSPMVLTII 340
Cdd:MTH00112 327 TLTTLSTLLLPLSPMILTII 346
 
Name Accession Description Interval E-value
ND2 MTH00112
NADH dehydrogenase subunit 2; Provisional
 1-340 4.55e-138

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214423 [Multi-domain]  Cd Length: 346  Bit Score: 395.35  E-value: 4.55e-138
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 350430919   1 LISTLSILLGTTLTITSNHWATAWAGLEINTLSIIPMISKSHHPRAIEAATKYFLVQATASTLVLFSSTANAQHTGQWDI 80
Cdd:MTH00112   7 LIITTSLILGTIITISSNHWLMAWTGLEINTLAIIPLISKPHHPRATEAATKYFLTQAAASALILFSSTTNAWNTGQWDI 86

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 350430919  81 TQLTYPPACALLTIAIAIKLGLTPFHFWFPEVLQGSSLTTAMLLSTVMKLPPTTLLLTSSHSLNPTLLTTMSIMSIALGG 160
Cdd:MTH00112  87 TQLTNPTSCTLLTLALAMKLGLAPFHFWLPEVLQGSTTTTALILSTWQKLAPLTLLLMTSNSLNPTLLLTLAILSTLIGG 166

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 350430919 161 WMGLNQTQTRKIMAFSSISHLGWMMTTITYNPKLTLLAFLTYTLMTSSIFLTMNTTNTLKLSTLMIAWTKAPMLSTTLML 240
Cdd:MTH00112 167 WGGLNQTQLRKIMAFSSIAHLGWMIAIITYSPKLTLLTFYIYILMTTPMFLTLNTTSTKTLKDMMTSWTKSPTLNTTLML 246

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 350430919 241 TLLSLSGLPPLTGFLPKWLIMQELIKQETTTTATTISTLSLLGLFFYLRLAYCSTITLPPNPSSKTKQWSTKSSTNPLIS 320
Cdd:MTH00112 247 TLLSLAGLPPLTGFMPKWLILQELTKQNMTPTATIMAMLSLLSLFFYLRLTYISTITLPPNTTNMMMKWRTKPKKNTLTA 326

                        330       340
                 ....*....|....*....|
gi 350430919 321 MLTSLSISLLPLSPMVLTII 340
Cdd:MTH00112 327 TLTTLSTLLLPLSPMILTII 346
NuoN COG1007
NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH: ...
 4-211 1.70e-21

NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 2 (chain N) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440631 [Multi-domain]  Cd Length: 473  Bit Score: 94.80  E-value: 1.70e-21
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 350430919   4 TLSILLGTTLTITSNHWATAWAGLEINTLSIIPMIS-KSHHPRAIEAATKYFLVQATASTLVLF--------SSTAN--- 71
Cdd:COG1007  108 LLFATLGMMLMASANDLLTLFLGLELLSLSLYVLVAfRRDDRRSSEAALKYFLLGALSSGFLLYgisllygaTGSLNlag 187

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 350430919  72 -AQHTGQWDITQLTYPPACALLTIAIAIKLGLTPFHFWFPEVLQGSSLTTAMLLSTVMKL----PPTTLLLTSSHSLNP- 145
Cdd:COG1007  188 iAAALAAGGANSPLLLLGLVLVLAGLAFKLSAVPFHMWTPDVYEGAPTPVTAFLATAPKIaafaALLRLLVEAFPGLAAd 267

                        170       180       190       200       210       220       230
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 350430919 146 --TLLTTMSIMSIALGGWMGLNQTQTRKIMAFSSISHLGWMMTTITYNPKL----TLLAFLTYTLMTSSIFL 211
Cdd:COG1007  268 wqLLLAVLAVLSMTVGNLAALAQTNVKRMLAYSSIAHAGYLLLGLAAGTPLgvsaALFYLLAYLFMNLGAFA 339
Proton_antipo_M pfam00361
Proton-conducting membrane transporter; This is a family of membrane transporters that ...
 17-262 3.13e-18

Proton-conducting membrane transporter; This is a family of membrane transporters that inlcudes some 7 of potentially 14-16 TM regions. In many instances the family forms part of complex I that catalyzes the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane, and in this context is a combination predominantly of subunits 2, 4, 5, 14, L, M and N. In many bacterial species these proteins are probable stand-alone transporters not coupled with oxidoreduction. The family in total represents homologs across the phyla.


Pssm-ID: 425636 [Multi-domain]  Cd Length: 291  Bit Score: 83.52  E-value: 3.13e-18
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 350430919   17 SNHWATAWAGLEINTLSIIPMI-SKSHHPRAIEAATKYFLVQATASTLVLFSSTANAQHTGQWDITQL-TYPPACA---- 90
Cdd:pfam00361   1 ANDLLLMYLGWEAVLLPSYLLIgYWGKSPRSSEAGMKYFLLTLLGSSILLFGISLMYNYTGTLSFDELsKALTGGLnssg 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 350430919   91 ------LLTIAIAIKLGLTPFHFWFPEVLQGSSLT-TAMLLSTVMKLPPTTLLLTSS--HSLNPT---LLTTMSIMSIAL 158
Cdd:pfam00361  81 llllflLILVGFLFKSAQVPFHTWLPDAYEGAPTPvSALLAATLVKAGGYGLIRRSLlyLPSSPFiqqILLILAIISMLL 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 350430919  159 GGWMGLNQTQTRKIMAFSSISHLGWM----MTTITYNPKLTLLAFLTYTLMTSSIFLTMNTTNTLKLSTLMIA-----WT 229
Cdd:pfam00361 161 GSLAALVQTDIKRLLAYSSISHMGYMlialGAGTIYGIQAAIFHLLTHGLFSAGLFLCAGSVIYRRVHTRNIRdygglAK 240

                         250       260       270
                  ....*....|....*....|....*....|...
gi 350430919  230 KAPMLSTTLMLTLLSLSGLPPLTGFLPKWLIMQ 262
Cdd:pfam00361 241 TMPILALVFLVAMLSLAGLPPTAGFLGKFLILA 273
NDH_I_N TIGR01770
proton-translocating NADH-quinone oxidoreductase, chain N; This model describes the 14th ...
 5-291 1.12e-17

proton-translocating NADH-quinone oxidoreductase, chain N; This model describes the 14th (based on E. coli) structural gene, N, of bacterial and chloroplast energy-transducing NADH (or NADPH) dehydrogenases. This model does not describe any subunit of the mitochondrial complex I (for which the subunit composition is very different), nor NADH dehydrogenases that are not coupled to ion transport. The Enzyme Commission designation 1.6.5.3, for NADH dehydrogenase (ubiquinone), is applied broadly, perhaps unfortunately, even if the quinone is menaquinone (Thermus, Mycobacterium) or plastoquinone (chloroplast). For chloroplast members, the name NADH-plastoquinone oxidoreductase is used for the complex and this protein is designated as subunit 2 or B. This model also includes a subunit of a related complex in the archaeal methanogen, Methanosarcina mazei, in which F420H2 replaces NADH and 2-hydroxyphenazine replaces the quinone. [Energy metabolism, Electron transport]


Pssm-ID: 273795 [Multi-domain]  Cd Length: 468  Bit Score: 83.46  E-value: 1.12e-17
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 350430919    5 LSILLGTTLTITSNHWATAWAGLEINTLSI-IPMISKSHHPRAIEAATKYFLVQATASTLVLFSST-------------- 69
Cdd:TIGR01770 109 LFALLGIFLLVSSNDLLSIYLGLELQSLCFyVLAGLKRKSRFSTEAGLKYFILGAFSSGLLLFGISliygftgslnfedl 188

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 350430919   70 ANAQHTGQWDITQLTYppACALLTIAIAIKLGLTPFHFWFPEVLQGSSLTTAMLLSTVMKL----PPTTLLLTSSHSLNP 145
Cdd:TIGR01770 189 LLFLSNGMLNISLLLL--GIVLILVGLLFKLSAVPFHMWVPDVYEGAPTPVTAFFSIVPKIaifaVFLRLFLYILFGFSE 266

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 350430919  146 T---LLTTMSIMSIALGGWMGLNQTQTRKIMAFSSISHLGWMMTTITYNPKL----TLLAFLTYTLMTSSIFLTM----- 213
Cdd:TIGR01770 267 AwqiFLAIIAFLSMLIGNFGALAQKKVKRLLAYSSISHVGYILIGLLAGTLEgikaVLFYIFIYALMSLGAFGVLsllrs 346

                         250       260       270       280       290       300       310
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 350430919  214 -NTTNTLKLSTLMIAWTKAPMLSTTLMLTLLSLSGLPPLTGFLPKWLIMQELIKQETTTTATTISTLSLLGLFFYLRLA 291
Cdd:TIGR01770 347 yKDEWIEYISDFAGLFKTNPILAILILIFMFSLAGIPPLAGFFGKFYVFFALLKSGLYWLAVIAVLTSVIGAFYYLRVV 425
 
Name Accession Description Interval E-value
ND2 MTH00112
NADH dehydrogenase subunit 2; Provisional
 1-340 4.55e-138

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214423 [Multi-domain]  Cd Length: 346  Bit Score: 395.35  E-value: 4.55e-138
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 350430919   1 LISTLSILLGTTLTITSNHWATAWAGLEINTLSIIPMISKSHHPRAIEAATKYFLVQATASTLVLFSSTANAQHTGQWDI 80
Cdd:MTH00112   7 LIITTSLILGTIITISSNHWLMAWTGLEINTLAIIPLISKPHHPRATEAATKYFLTQAAASALILFSSTTNAWNTGQWDI 86

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 350430919  81 TQLTYPPACALLTIAIAIKLGLTPFHFWFPEVLQGSSLTTAMLLSTVMKLPPTTLLLTSSHSLNPTLLTTMSIMSIALGG 160
Cdd:MTH00112  87 TQLTNPTSCTLLTLALAMKLGLAPFHFWLPEVLQGSTTTTALILSTWQKLAPLTLLLMTSNSLNPTLLLTLAILSTLIGG 166

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 350430919 161 WMGLNQTQTRKIMAFSSISHLGWMMTTITYNPKLTLLAFLTYTLMTSSIFLTMNTTNTLKLSTLMIAWTKAPMLSTTLML 240
Cdd:MTH00112 167 WGGLNQTQLRKIMAFSSIAHLGWMIAIITYSPKLTLLTFYIYILMTTPMFLTLNTTSTKTLKDMMTSWTKSPTLNTTLML 246

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 350430919 241 TLLSLSGLPPLTGFLPKWLIMQELIKQETTTTATTISTLSLLGLFFYLRLAYCSTITLPPNPSSKTKQWSTKSSTNPLIS 320
Cdd:MTH00112 247 TLLSLAGLPPLTGFMPKWLILQELTKQNMTPTATIMAMLSLLSLFFYLRLTYISTITLPPNTTNMMMKWRTKPKKNTLTA 326

                        330       340
                 ....*....|....*....|
gi 350430919 321 MLTSLSISLLPLSPMVLTII 340
Cdd:MTH00112 327 TLTTLSTLLLPLSPMILTII 346
ND2 MTH00135
NADH dehydrogenase subunit 2; Provisional
 5-318 1.83e-111

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177193 [Multi-domain]  Cd Length: 347  Bit Score: 327.92  E-value: 1.83e-111
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 350430919   5 LSILLGTTLTITSNHWATAWAGLEINTLSIIPMISKSHHPRAIEAATKYFLVQATASTLVLFSSTANAQHTGQWDITQLT 84
Cdd:MTH00135  11 FSLGLGTTLTFASSHWLLAWMGLEINTLAIIPLMAQHHHPRAVEATTKYFLTQATAAAMILFASTTNAWLTGQWDIQQMS 90

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 350430919  85 YPPACALLTIAIAIKLGLTPFHFWFPEVLQGSSLTTAMLLSTVMKLPPTTLLLTSSHSlNPTLLTTMSIMSIALGGWMGL 164
Cdd:MTH00135  91 HPLPTTMITLALALKIGLAPLHFWLPEVLQGLDLTTGLILSTWQKLAPFALILQIAPT-NPTLLITLGLTSTLVGGWGGL 169

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 350430919 165 NQTQTRKIMAFSSISHLGWMMTTITYNPKLTLLAFLTYTLMTSSIFLTMNTTNTLKLSTLMIAWTKAPMLSTTLMLTLLS 244
Cdd:MTH00135 170 NQTQLRKILAYSSIAHLGWMILVLQFSPSLTLLALLTYIIMTSSAFLTFKLNSSTKINTLATSWTKAPALTALTPLILLS 249

                        250       260       270       280       290       300       310
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 350430919 245 LSGLPPLTGFLPKWLIMQELIKQETTTTATTISTLSLLGLFFYLRLAYCSTITLPPNPSSKTKQWSTKSSTNPL 318
Cdd:MTH00135 250 LGGLPPLTGFMPKWLILQELTKQDLPLTATLAALSALLSLYFYLRLSYAMTLTISPNTLNGTTPWRLPSTQLTL 323
ND2 MTH00070
NADH dehydrogenase subunit 2; Provisional
 6-340 4.48e-110

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177142 [Multi-domain]  Cd Length: 346  Bit Score: 324.18  E-value: 4.48e-110
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 350430919   6 SILLGTTLTITSNHWATAWAGLEINTLSIIPMISKSHHPRAIEAATKYFLVQATASTLVLFSSTANAQHTGQWDITQLTY 85
Cdd:MTH00070  12 SLALGTMITLSSNHWFLAWMGLEINTLAIIPLMTKTHHPRATEAATKYFLTQASASALILFSSTINAWFTGEWTIMNMQT 91

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 350430919  86 PPACALLTIAIAIKLGLTPFHFWFPEVLQGSSLTTAMLLSTVMKLPPTTLLLTSSHSLNPTLLTTMSIMSIALGGWMGLN 165
Cdd:MTH00070  92 PLPTIMLTIALMMKLGIAPFHFWLPEVLQGLDLTTGLILSTWQKLAPMALLIQISHLLNSNLLIIMGLLSTLIGGWGGLN 171

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 350430919 166 QTQTRKIMAFSSISHLGWMMTTITYNPKLTLLAFLTYTLMTSSIFLTMNTTNTLKLSTLMIAWTKAPMLSTTLMLTLLSL 245
Cdd:MTH00070 172 QTQLRKIMAYSSIAHLGWMIIILTFSPHLTLLNLLIYLIMTSSMFLMLMNLNSTNINKLSSSWSKNPTLTSMMMLTLLSL 251

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 350430919 246 SGLPPLTGFLPKWLIMQELIKQETTTTATTISTLSLLGLFFYLRLAYCSTITLPPNPSSKTKQWSTKSSTNPLISMLTSL 325
Cdd:MTH00070 252 GGLPPTTGFIPKWLILQELTKQNLTTLATLMALSALLSLFFYLRLSYAMSLTTSPNTSNSKLYWRFKNKTNNLLSLTIIL 331

                        330
                 ....*....|....*
gi 350430919 326 SISLLPLSPMVLTII 340
Cdd:MTH00070 332 SLMLLPITPTILNLF 346
ND2 MTH00105
NADH dehydrogenase subunit 2; Provisional
 1-339 4.68e-99

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177167 [Multi-domain]  Cd Length: 347  Bit Score: 296.37  E-value: 4.68e-99
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 350430919   1 LISTLSILLGTTLTITSNHWATAWAGLEINTLSIIPMISKSHHPRAIEAATKYFLVQATASTLVLFSSTANAQHTGQWDI 80
Cdd:MTH00105   7 IIIYLTLFLGTMITMISSHWLLAWIGLEMNMLAIIPILMKKHNPRSTEAATKYFLTQATASMLLMMAIIINLMYSGQWTI 86

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 350430919  81 TQLTYPPACALLTIAIAIKLGLTPFHFWFPEVLQGSSLTTAMLLSTVMKLPPTTLLLTSSHSLNPTLLTTMSIMSIALGG 160
Cdd:MTH00105  87 TKLTNPTASTLMTIALAMKLGLAPFHFWVPEVTQGIPLSSGMILLTWQKLAPLSILYQISPSINPNLLLTLAILSILIGG 166

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 350430919 161 WMGLNQTQTRKIMAFSSISHLGWMMTTITYNPKLTLLAFLTYTLMTSSIFLTMNTTNTLKLSTLMIAWTKAPMLSTTLML 240
Cdd:MTH00105 167 WGGLNQTQLRKILAYSSIAHMGWMTAILPYNPTLTLLNLLIYIIMTLTMFMLLMLNSSTTTLSLSHTWNKTPLMTSLILL 246

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 350430919 241 TLLSLSGLPPLTGFLPKWLIMQELIKQETTTTATTISTLSLLGLFFYLRLAYCSTITL-PPNPSSKTKQWSTKSSTNPLI 319
Cdd:MTH00105 247 TLLSLGGLPPLTGFMPKWMIIQELTKNNNIILPTLMAITALLNLYFYMRLIYSTSLTMfPSTNNMKMKWQFENTKPMTLL 326

                        330       340
                 ....*....|....*....|
gi 350430919 320 SMLTSLSISLLPLSPMVLTI 339
Cdd:MTH00105 327 PTLIILSTMLLPLTPMLSIL 346
ND2 MTH00200
NADH dehydrogenase subunit 2; Provisional
 5-340 6.92e-84

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177246 [Multi-domain]  Cd Length: 347  Bit Score: 257.59  E-value: 6.92e-84
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 350430919   5 LSILLGTTLTITSNHWATAWAGLEINTLSIIPMISKSHHPRAIEAATKYFLVQATASTLVLFSSTANAQHTGQWDITQLT 84
Cdd:MTH00200  11 LSLGLGTLLTFSSSHWFLIWLGLEINTLAIIPLLIKQHHPRKVEATTKYFIIQATASALLLFGGLLNAWTSGQWGISEML 90

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 350430919  85 YPPACALLTIAIAIKLGLTPFHFWFPEVLQGSSLTTAMLLSTVMKLPPTTLLLTSSHSLNPTLLTTMSIMSIALGGWMGL 164
Cdd:MTH00200  91 GPLSETLILLALALKLGLAPGHFWVPDVLQGLSLQTGLILSTWQKLAPFALLIQLAPALNSNILLLLGLLSVLVGGWGGL 170

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 350430919 165 NQTQTRKIMAFSSISHLGWMMTTITYNPKLTLLAFLTYTLMTSSIFLTMNTTNTLKLSTLMIAWTKAPMLSTTLMLTLLS 244
Cdd:MTH00200 171 NQTQLRKILAYSSIAHLGWLLSGLVYSPNLALLYLLLYVIITLTVFLLLNLLNSTKINSLSSSKTKNPILSMLLGLTLLS 250

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 350430919 245 LSGLPPLTGFLPKWLIMQELIKQETTTTATTISTLSLLGLFFYLRLAYCSTITLPPNPSSKTKQWSTKSSTNPLISMLTS 324
Cdd:MTH00200 251 LGGLPPLTGFFPKWLILQELSKQGLFIYATILLLGSLLSLFFYLRLSYLTLLTLSPNQINMMSSWRTKSNSNLLVGLLLL 330

                        330
                 ....*....|....*.
gi 350430919 325 LSISLLPLSPMVLTII 340
Cdd:MTH00200 331 LSILGLPLTPQLLFLF 346
ND2 MTH00041
NADH dehydrogenase subunit 2; Validated
 5-303 9.88e-74

NADH dehydrogenase subunit 2; Validated


Pssm-ID: 177116 [Multi-domain]  Cd Length: 349  Bit Score: 231.36  E-value: 9.88e-74
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 350430919   5 LSILLGTTLTITSNHWATAWAGLEINTLSIIPMISKSHHPRAIEAATKYFLVQATASTLVLFSSTANAQHTGQWDITQLT 84
Cdd:MTH00041  11 TSIILGTIIVISSNHWFLIWLGLELNTLSIIPILSSNFSPRSVEATIKYFLVQAFSAAILLNGALIQAWLSGSWSINGPL 90

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 350430919  85 YPPACALLTIAIAIKLGLTPFHFWFPEVLQGSSLTTAMLLSTVMKLPPTTLLLTSSHSLNPTLLTTMSIMSIALGGWMGL 164
Cdd:MTH00041  91 NTLSSIIITLALALKLGLAPCHFWFPDVLQGLPFLQGLIIATWQKIAPLILLISISNLLNSNILILCGILSVLVGGWGGL 170

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 350430919 165 NQTQTRKIMAFSSISHLGWMMTTITYNPKLTLLAFLTYTLMTSSIFLTMNTTNTLKLSTLMIAWTKAPMLSTTLMLTLLS 244
Cdd:MTH00041 171 NQTQTRKILAFSSIAHLGWIIITSAYSPNASIIMFLIYIIINTSIFLIGNNFSLSTLSHLNKLSQLNPISAFLFILSILS 250

                        250       260       270       280       290
                 ....*....|....*....|....*....|....*....|....*....|....*....
gi 350430919 245 LSGLPPLTGFLPKWLIMQELIKQETTTTATTISTLSLLGLFFYLRLAYCSTITLPPNPS 303
Cdd:MTH00041 251 LGGLPPLTGFLNKFISLYCLIQNNSILISIILIIGSLLSLFFYLRISFNTSLTLFPQHS 309
ND2 MTH00160
NADH dehydrogenase subunit 2; Provisional
 7-319 2.03e-50

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214442 [Multi-domain]  Cd Length: 335  Bit Score: 170.77  E-value: 2.03e-50
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 350430919   7 ILLGTTLTITSNHWATAWAGLEINTLSIIPMISKSHHPRAIEAATKYFLVQATASTLVLFSSTANAQHTGQWDITQLTyp 86
Cdd:MTH00160  14 LIMGTLISISSNSWFGAWMGLEINLLSFIPLISNKKNLMSSESSLKYFLIQALASIILLFSIILNMLNLMLFNNISSM-- 91

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 350430919  87 pacaLLTIAIAIKLGLTPFHFWFPEVLQGSSLTTAMLLSTVMKLPPTTLLltsSHSLNPTLLTTMSIMSIALGGWMGLNQ 166
Cdd:MTH00160  92 ----LINSSLLLKLGAAPFHFWFPEVMEGLSWINCFILMTWQKIAPLILL---SYLINNNFIIIIIILSAIIGAIGGLNQ 164

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 350430919 167 TQTRKIMAFSSISHLGWMMTTITYNPKLTLLAFLTYTLMTSSIFLTMNTTNTLKLSTLMIAWTKAPMLSTTLMLTLLSLS 246
Cdd:MTH00160 165 TSLRKILAYSSINHLGWMLSSMMISENLWLIYFLIYSIISLSIILLFNKFNIFFLNQLFNSNNKSKKIKFLLFLNLLSLG 244

                        250       260       270       280       290       300       310
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 350430919 247 GLPPLTGFLPKWLIMQELIKQETTTTATTISTLSLLGLFFYLRLAYCSTITLPPNPSSKTKQWSTKSSTNPLI 319
Cdd:MTH00160 245 GLPPFLGFLPKWIIIQLLISNNMFFLLFILIMSSLITLYFYLRISYSSLMLNYNKNKWNLKKKKNKFSLILNF 317
ND2 MTH00144
NADH dehydrogenase subunit 2; Provisional
 7-314 3.69e-41

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214432 [Multi-domain]  Cd Length: 328  Bit Score: 146.18  E-value: 3.69e-41
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 350430919   7 ILLGTTLTITSNHWATAWAGLEINTLSIIPMISKSHHPRAIEAATKYFLVQATASTLVLFSSTANAQHTGQWDITqltyp 86
Cdd:MTH00144  13 MVMGTLLSLSSSHWLGVWVGLEINLIGFLPLLVYKKKSSESESVVKYFIIQSLGSSLLIFGSLIMYNLSFSWFSM----- 87

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 350430919  87 pacALLTIAIAIKLGLTPFHFWFPEVLQGSSLTTAMLLSTVMKLPPttLLLTSSHSLNPTLLTT---MSIMSIALGGWMG 163
Cdd:MTH00144  88 ---SLLLLGLCLKLGLFPFHFWVPSVMAGLSWLSCFLLLTWQKVAP--LFLLSNFLDLYWLAYLlcvISVLSALVGSIGG 162

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 350430919 164 LNQTQTRKIMAFSSISHLGWMMTTITYNPKLTLLAFLTYTLMTSSIFLTMNTTNTLKLSTlMIAWTKAPMLSTTLMLTLL 243
Cdd:MTH00144 163 LNQTQVRALLAYSSISHTGWMLVAILHGSWLMWMYFLIYIVSSGFLFFSLWSGDSGSMKD-LGSLKPSYKTGLSIISLLL 241

                        250       260       270       280       290       300       310
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 350430919 244 SLSGLPPLTGFLPKWLIMQELIKQETTTTATTISTLSLLGLFFYLRLAYCSTITLPPNPSSKTKQWSTKSS 314
Cdd:MTH00144 242 SLGGLPPFLGFCSKLLVLISSMESSPLLLILLLLLGSLISLFFYLSVFFSSFLSSSKSKKSNSSKVLNSSI 312
ND2 MTH00011
NADH dehydrogenase subunit 2; Validated
 6-304 1.18e-40

NADH dehydrogenase subunit 2; Validated


Pssm-ID: 164587 [Multi-domain]  Cd Length: 330  Bit Score: 145.31  E-value: 1.18e-40
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 350430919   6 SILLGTTLTITSNHWATAWAGLEINTLSIIPMISKSHHPRAIEAATKYFLVQATASTLVLFSSTAnaqhtgQWDITQLTY 85
Cdd:MTH00011  14 TMTLGTLMALSSNNWLFLWMGMELNLLSFVPLMTSSKMNQESEAAVKYFLAQALGSGLLLLGMTM------MWSFPSLLK 87

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 350430919  86 PPACALLTIAIAIKLGLTPFHFWFPEVLQGSSLTTAMLLSTVMKLPPTTLLLTSSHSLNPTLLTTMSIMSIALGGWMGLN 165
Cdd:MTH00011  88 NITALMLLVSLMLKLGMAPCHFWFPSVMSSISWTLCLILSTWQKIAPLSILFFFTSHNILPMMTSMAAMSALAGGLGGMN 167

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 350430919 166 QTQTRKIMAFSSISHLGWMMTTITYNPKLTLLAFLTYTLMTSSIFLTMNTTNTLKLSTLMIAWTKAPMLSTTLMLTLLSL 245
Cdd:MTH00011 168 QTQLRPLLAYSSIGHMGWMTMISVFSPSMAILYFMTYIIITTPLMLLFAYLNAFSTKFNSKISSMSQTTSMSLFIMLLSL 247

                        250       260       270       280       290
                 ....*....|....*....|....*....|....*....|....*....|....*....
gi 350430919 246 SGLPPLTGFLPKWLIMQELIKQETTTTATTISTLSLLGLFFYLRLAYcSTITLPPNPSS 304
Cdd:MTH00011 248 GGLPPFTGFMPKLMAIETLTSNSMILILLVLIVGSLMNLFYYLNLIF-NFMYLSPTFSS 305
ND2 MTH00197
NADH dehydrogenase subunit 2; Provisional
 5-296 8.72e-36

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177244 [Multi-domain]  Cd Length: 323  Bit Score: 132.10  E-value: 8.72e-36
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 350430919   5 LSILLGTTLTITSNHWATAWAGLEINTLSIIPMISKSHHPRAIEAATKYFLVQATASTLVLFSSTANAQHTgqwditqLT 84
Cdd:MTH00197   5 FIIFGGVLFSLSSSNWFLVWIGMELNLIGFIPLLSQNKSITENEGAMKYFLFQEFGSALLLMGGSLSFSNL-------YL 77

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 350430919  85 YPPACALLTIAIAIKLGLTPFHFWFPEVLQGSSLTTAMLLSTVMKLPPTTLLLTSSHslNPTLLTTMSIMSIALGGWMGL 164
Cdd:MTH00197  78 SLLSVVLVILGLLLKLGAFPFHFWVPSVMESLSWFNCFLLATWQKLAPLLILAFNSS--SFMGLLICSVLSSLIGGIGGM 155

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 350430919 165 NQTQTRKIMAFSSISHLGWMMTTITYNPKLTLLAFLTYTLMTSSIFLTMNTTNTLKLSTLMIAWTKAPMLSTTLMLTLLS 244
Cdd:MTH00197 156 NQSNIRQLLAYSSIGHTGWMLMSLVYSPSIFMLYYLIYFVIMFMLFLFLSKNNLSSLNQQYSNPESMSSNLVFLGLSFLS 235

                        250       260       270       280       290
                 ....*....|....*....|....*....|....*....|....*....|..
gi 350430919 245 LSGLPPLTGFLPKWLIMQELIKQETTTTATTISTLSLLGLFFYLRLAYCSTI 296
Cdd:MTH00197 236 LGGLPPLSGFFLKWLILTSLLSSNISLITFMLILSTCFSLYYYLSLAYKSLI 287
NuoN COG1007
NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH: ...
 4-211 1.70e-21

NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 2 (chain N) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440631 [Multi-domain]  Cd Length: 473  Bit Score: 94.80  E-value: 1.70e-21
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 350430919   4 TLSILLGTTLTITSNHWATAWAGLEINTLSIIPMIS-KSHHPRAIEAATKYFLVQATASTLVLF--------SSTAN--- 71
Cdd:COG1007  108 LLFATLGMMLMASANDLLTLFLGLELLSLSLYVLVAfRRDDRRSSEAALKYFLLGALSSGFLLYgisllygaTGSLNlag 187

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 350430919  72 -AQHTGQWDITQLTYPPACALLTIAIAIKLGLTPFHFWFPEVLQGSSLTTAMLLSTVMKL----PPTTLLLTSSHSLNP- 145
Cdd:COG1007  188 iAAALAAGGANSPLLLLGLVLVLAGLAFKLSAVPFHMWTPDVYEGAPTPVTAFLATAPKIaafaALLRLLVEAFPGLAAd 267

                        170       180       190       200       210       220       230
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 350430919 146 --TLLTTMSIMSIALGGWMGLNQTQTRKIMAFSSISHLGWMMTTITYNPKL----TLLAFLTYTLMTSSIFL 211
Cdd:COG1007  268 wqLLLAVLAVLSMTVGNLAALAQTNVKRMLAYSSIAHAGYLLLGLAAGTPLgvsaALFYLLAYLFMNLGAFA 339
ND2 MTH00196
NADH dehydrogenase subunit 2; Provisional
 7-290 3.02e-21

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214453 [Multi-domain]  Cd Length: 365  Bit Score: 93.17  E-value: 3.02e-21
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 350430919   7 ILLGTTLTITSNHWATAWAGLEINTLSIIPMI-SKSHHPRAIEAATKYFLVQATASTLVLFSSTANAQHTGQWDI----- 80
Cdd:MTH00196   2 VALGILCLISSSNWLSVYLAIELQTLSLFILIaQNRGSGYSAEAGLKYFVLGALSSGLFLFGCALLCGTTGGLHLsyinl 81

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 350430919  81 --------TQLTYPPACALLTIAIAIKLGLTPFHFWFPEVLQGSSLTTAMLLSTVMKLPPTTLLLtsSHSLNPTLLTTMS 152
Cdd:MTH00196  82 vlnsgqsfSSVSVPIGYLLIIVALLFKLSVAPFHMWAPDVYEGAPTKTTALLAIVPKLGIFSILV--SIGLNVNILLIGG 159

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 350430919 153 IMSIALGGWMGLNQTQTRKIMAFSSISHLGWMMTTITYNPKLTLLAFLTY----TLMTSSIFLTMNTTNTLKlsTLMIAW 228
Cdd:MTH00196 160 LFSLFVGAIGALNQTKIKRLLAYSGIGHMGFVLWGIEIGSFESIQASLVYlfiyIIMSICVFSIILALNVYK--NLIIEF 237

                        250       260       270       280       290       300
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 350430919 229 T----KAPMLSTTLMLTLLSLSGLPPLTGFLPKWLIMQELIKQETTTTATTISTLSLLGLFFYLRL 290
Cdd:MTH00196 238 SglsrRLPILAITLALTFLSIAGIPPLVGFLGKWLILLSGVVYQYYLIFLLAVFCSVIAGVYYVRI 303
Proton_antipo_M pfam00361
Proton-conducting membrane transporter; This is a family of membrane transporters that ...
 17-262 3.13e-18

Proton-conducting membrane transporter; This is a family of membrane transporters that inlcudes some 7 of potentially 14-16 TM regions. In many instances the family forms part of complex I that catalyzes the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane, and in this context is a combination predominantly of subunits 2, 4, 5, 14, L, M and N. In many bacterial species these proteins are probable stand-alone transporters not coupled with oxidoreduction. The family in total represents homologs across the phyla.


Pssm-ID: 425636 [Multi-domain]  Cd Length: 291  Bit Score: 83.52  E-value: 3.13e-18
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 350430919   17 SNHWATAWAGLEINTLSIIPMI-SKSHHPRAIEAATKYFLVQATASTLVLFSSTANAQHTGQWDITQL-TYPPACA---- 90
Cdd:pfam00361   1 ANDLLLMYLGWEAVLLPSYLLIgYWGKSPRSSEAGMKYFLLTLLGSSILLFGISLMYNYTGTLSFDELsKALTGGLnssg 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 350430919   91 ------LLTIAIAIKLGLTPFHFWFPEVLQGSSLT-TAMLLSTVMKLPPTTLLLTSS--HSLNPT---LLTTMSIMSIAL 158
Cdd:pfam00361  81 llllflLILVGFLFKSAQVPFHTWLPDAYEGAPTPvSALLAATLVKAGGYGLIRRSLlyLPSSPFiqqILLILAIISMLL 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 350430919  159 GGWMGLNQTQTRKIMAFSSISHLGWM----MTTITYNPKLTLLAFLTYTLMTSSIFLTMNTTNTLKLSTLMIA-----WT 229
Cdd:pfam00361 161 GSLAALVQTDIKRLLAYSSISHMGYMlialGAGTIYGIQAAIFHLLTHGLFSAGLFLCAGSVIYRRVHTRNIRdygglAK 240

                         250       260       270
                  ....*....|....*....|....*....|...
gi 350430919  230 KAPMLSTTLMLTLLSLSGLPPLTGFLPKWLIMQ 262
Cdd:pfam00361 241 TMPILALVFLVAMLSLAGLPPTAGFLGKFLILA 273
PRK05777 PRK05777
NADH-quinone oxidoreductase subunit NuoN;
8-186 4.91e-18

NADH-quinone oxidoreductase subunit NuoN;


Pssm-ID: 235603 [Multi-domain]  Cd Length: 476  Bit Score: 84.49  E-value: 4.91e-18
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 350430919   8 LLGTTLTITSNHWATAWAGLEINTLSIIPMIS-KSHHPRAIEAATKYFLVQATASTLVL--------------FSSTANA 72
Cdd:PRK05777 113 LLGMMVMVSANDLLTLFLGLELLSLPLYALAAlRRDRRRSLEAAIKYFVLGALASGFLLygmsllygatgslsFAGIAKA 192

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 350430919  73 QHTGQWDITQLTYppACALLTIAIAIKLGLTPFHFWFPEVLQGSSLTTAMLLSTVMKL----PPTTLLLTSSHSLNPT-- 146
Cdd:PRK05777 193 LADGSGNSLLLLF--GLVFLLVGLAFKLSAVPFHMWTPDVYEGAPTPVTAFLATAPKIaafaVLLRLLVVAFGGLSEDwq 270

                        170       180       190       200
                 ....*....|....*....|....*....|....*....|.
gi 350430919 147 -LLTTMSIMSIALGGWMGLNQTQTRKIMAFSSISHLGWMMT 186
Cdd:PRK05777 271 qVLAIIAIASMLVGNLAALSQTNIKRLLAYSSIAHAGYLLV 311
NDH_I_N TIGR01770
proton-translocating NADH-quinone oxidoreductase, chain N; This model describes the 14th ...
 5-291 1.12e-17

proton-translocating NADH-quinone oxidoreductase, chain N; This model describes the 14th (based on E. coli) structural gene, N, of bacterial and chloroplast energy-transducing NADH (or NADPH) dehydrogenases. This model does not describe any subunit of the mitochondrial complex I (for which the subunit composition is very different), nor NADH dehydrogenases that are not coupled to ion transport. The Enzyme Commission designation 1.6.5.3, for NADH dehydrogenase (ubiquinone), is applied broadly, perhaps unfortunately, even if the quinone is menaquinone (Thermus, Mycobacterium) or plastoquinone (chloroplast). For chloroplast members, the name NADH-plastoquinone oxidoreductase is used for the complex and this protein is designated as subunit 2 or B. This model also includes a subunit of a related complex in the archaeal methanogen, Methanosarcina mazei, in which F420H2 replaces NADH and 2-hydroxyphenazine replaces the quinone. [Energy metabolism, Electron transport]


Pssm-ID: 273795 [Multi-domain]  Cd Length: 468  Bit Score: 83.46  E-value: 1.12e-17
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 350430919    5 LSILLGTTLTITSNHWATAWAGLEINTLSI-IPMISKSHHPRAIEAATKYFLVQATASTLVLFSST-------------- 69
Cdd:TIGR01770 109 LFALLGIFLLVSSNDLLSIYLGLELQSLCFyVLAGLKRKSRFSTEAGLKYFILGAFSSGLLLFGISliygftgslnfedl 188

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 350430919   70 ANAQHTGQWDITQLTYppACALLTIAIAIKLGLTPFHFWFPEVLQGSSLTTAMLLSTVMKL----PPTTLLLTSSHSLNP 145
Cdd:TIGR01770 189 LLFLSNGMLNISLLLL--GIVLILVGLLFKLSAVPFHMWVPDVYEGAPTPVTAFFSIVPKIaifaVFLRLFLYILFGFSE 266

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 350430919  146 T---LLTTMSIMSIALGGWMGLNQTQTRKIMAFSSISHLGWMMTTITYNPKL----TLLAFLTYTLMTSSIFLTM----- 213
Cdd:TIGR01770 267 AwqiFLAIIAFLSMLIGNFGALAQKKVKRLLAYSSISHVGYILIGLLAGTLEgikaVLFYIFIYALMSLGAFGVLsllrs 346

                         250       260       270       280       290       300       310
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 350430919  214 -NTTNTLKLSTLMIAWTKAPMLSTTLMLTLLSLSGLPPLTGFLPKWLIMQELIKQETTTTATTISTLSLLGLFFYLRLA 291
Cdd:TIGR01770 347 yKDEWIEYISDFAGLFKTNPILAILILIFMFSLAGIPPLAGFFGKFYVFFALLKSGLYWLAVIAVLTSVIGAFYYLRVV 425
ND2 MTH00199
NADH dehydrogenase subunit 2; Provisional
 5-182 6.74e-15

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177245 [Multi-domain]  Cd Length: 460  Bit Score: 75.05  E-value: 6.74e-15
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 350430919   5 LSILLGTTLTITSNHWATAWAGLEINTLSIIPMIS-KSHHPRAIEAATKYFLVQATASTLVLFSSTANAQHTGQWDITQL 83
Cdd:MTH00199 104 LIVALGSLLLVSSINWLSIYLAIELQTLTLFILVAlKRDSAYSTEAGLKYFVLGAVSSGLFLFGCALLYGLTGETSIQGI 183

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 350430919  84 TYPPAC----ALLTIAIAIKLGLTPFHFWFPEVLQGSSLTTAMLLSTVMKLPPTTLLLTSSHSLNPTLLTtmSIMSIALG 159
Cdd:MTH00199 184 NSILTGdvgkILITISLLFKLSAAPFHMWAPDVYEGAPTITTALLATVPKIGVFSILVQIGPVTNVVLIC--AVLSIIYG 261

                        170       180
                 ....*....|....*....|...
gi 350430919 160 GWMGLNQTQTRKIMAFSSISHLG 182
Cdd:MTH00199 262 AIGALNQTKIKRLLAYSGIGHMG 284
HyfB COG0651
Formate hydrogenlyase subunit 3/Multisubunit Na+/H+ antiporter, MnhD subunit [Energy ...
 8-290 4.57e-14

Formate hydrogenlyase subunit 3/Multisubunit Na+/H+ antiporter, MnhD subunit [Energy production and conversion, Inorganic ion transport and metabolism];


Pssm-ID: 440416 [Multi-domain]  Cd Length: 430  Bit Score: 72.49  E-value: 4.57e-14
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 350430919   8 LLGTTLTITSNHWATAWAGLEINTLSIIPMISKSHHPRAIEAATKYFLVQATASTLVLFSSTANAQHTGQWDITQL---- 83
Cdd:COG0651  117 LAGMNGAFLTGDLFNLFVFFEVMLLASYGLVALGGTKEALRAGLKYLILNLVGSALFLLGVGLLYGATGTLNMADLaarl 196

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 350430919  84 -TYPP-----ACALLTIAIAIKLGLTPFHFWFPEVLQGSSLTTAMLLSTVM-KLPP-------TTLLLTSSHSLNPTLLT 149
Cdd:COG0651  197 aELDPglllaAFALLLVGFGIKAALFPLHFWLPDAYPAAPSPVSALLSGLLtKVGVyailrvlTLLFGADPALFLGTLLL 276

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 350430919 150 TMSIMSIALGGWMGLNQTQTRKIMAFSSISHLGWMMTTITYNPKLTLLAFLTY----TLMTSSIFLT----MNTTNTLKL 221
Cdd:COG0651  277 VLGLLTMLVGALGALAQRDLKRLLAYSSVSQIGYILLGLGLGTPLGLAGALFHllnhALAKALLFLAagaiERATGTRDL 356

                        250       260       270       280       290       300
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 350430919 222 STLMIAWTKAPMLSTTLMLTLLSLSGLPPLTGFLPKWLIMQELIKQETTTTATTISTLSLLGLFFYLRL 290
Cdd:COG0651  357 DKLGGLGKRMPLTAAAFLIGALALAGLPPLSGFVSKWLLLQAALEAGAWLLAAVLLLSSLLTLAYFVRI 425
ND2 MTH00198
NADH dehydrogenase subunit 2; Provisional
 9-204 4.42e-13

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214454 [Multi-domain]  Cd Length: 607  Bit Score: 69.89  E-value: 4.42e-13
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 350430919   9 LGTTLTITSNHWATAWAGLEINTLSIIPMISKSHHPRAI---------EAATKYFLVQATASTLVLFSSTANAQHTGQ-- 77
Cdd:MTH00198 199 LGGLLLIESANWLTIYLALEFQTLALFILAGEGSQPGSHfpspgntppESGLKYWILGAMSSGFYLFGCALYFGFTGNeg 278

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 350430919  78 ------------WDITQLTYPPACALLTIAIAIKLGLTPFHFWFPEVLQGSSLTTAMLLSTVMKLppTTLLLTSSHSLNP 145
Cdd:MTH00198 279 mlgtilsatletTNIELRQGSLGYLFITVAILFKLAAAPFHMWTPDVYEGAPTPTTALIAIIPKF--TVYILLTSLVITS 356

                        170       180       190       200       210
                 ....*....|....*....|....*....|....*....|....*....|....*....
gi 350430919 146 TLLTTMSIMSIALGGWMGLNQTQTRKIMAFSSISHLGWMMTTITYNPKLTLLAFLTYTL 204
Cdd:MTH00198 357 KLLLSVAIISLVVGAFGALNQTRIKRLLAYSGIGHIGFILIGVSAGTYESLQASWTYAV 415
NuoM COG1008
NADH:ubiquinone oxidoreductase subunit 4 (chain M) [Energy production and conversion]; NADH: ...
 32-185 1.16e-11

NADH:ubiquinone oxidoreductase subunit 4 (chain M) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 4 (chain M) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440632 [Multi-domain]  Cd Length: 488  Bit Score: 65.49  E-value: 1.16e-11
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 350430919  32 LSIIPM---ISKSHHPRAIEAATKYFLVQATASTLVLFSSTANAQHTGQW-----DITQLTYPPA-----CALLTIAIAI 98
Cdd:COG1008  142 LMLIPMyflIGIWGGERRIYAAIKFFLYTLAGSLLMLVAILALYFLAGALtfdiaELAAAPLPLTaqlllFLAFFIAFAV 221

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 350430919  99 KLGLTPFHFWFPEVLQGSSLTTAMLLSTVMK-----------LPpttLLLTSSHSLNPTLLTtMSIMSIALGGWMGLNQT 167
Cdd:COG1008  222 KVPMFPFHTWLPDAHVEAPTAGSVLLAGVLLkmggygllrfaLP---LFPEASAYFAPLLAA-LGVIGIIYGALVALAQT 297

                        170
                 ....*....|....*...
gi 350430919 168 QTRKIMAFSSISHLGWMM 185
Cdd:COG1008  298 DLKRLIAYSSVSHMGFVL 315
PRK08676 PRK08676
hydrogenase membrane subunit; Validated
 7-209 3.98e-09

hydrogenase membrane subunit; Validated


Pssm-ID: 181537 [Multi-domain]  Cd Length: 485  Bit Score: 57.46  E-value: 3.98e-09
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 350430919   7 ILLGTTLTITSNHWATAWAGLEINTLSIIPMISKSHHPRAIEAATKYFLVQATA------STLVLFSSTANAQHTGQWDI 80
Cdd:PRK08676 111 LLSVITFAFFSDNLALFWIFAELTTVFSAMLIAILSARENIDAALKYIFIASTAmifafiGLIFLFSLTRQALGTGTLNW 190

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 350430919  81 TQLT-----YPPACALLT-----IAIAIKLGLTPFHFWFPEV-LQGSSLTTAMLLSTVMKLPPTTLLL-------TSSHS 142
Cdd:PRK08676 191 TELAahaslLSPSVLGASflfifIGFLAKSGLVPFHTWLPAAyAKAPSVVSALLSGTVLNIGIYGILRlsallrqSGAAE 270

                        170       180       190       200       210       220
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 350430919 143 LNPTLLTTMSIMSIALGGWMGLNQTQTRKIMAFSSISHLGWMMTTITYNPKLTLLAFLTYTLMTSSI 209
Cdd:PRK08676 271 QFSNVLIGLGIFSIAVAAFSMLSQRNLKKLIAFSSIEHMGLMLLGIGIGTPLALFWMLFHMLAHSLV 337
PRK12561 PRK12561
NAD(P)H-quinone oxidoreductase subunit 4; Provisional
 49-188 1.04e-08

NAD(P)H-quinone oxidoreductase subunit 4; Provisional


Pssm-ID: 237137 [Multi-domain]  Cd Length: 504  Bit Score: 56.19  E-value: 1.04e-08
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 350430919  49 AATKYFLVQATASTLVLFSSTANAQHTGQ--WDITQLT---YPPACALLT-----IAIAIKLGLTPFHFWFPEVLQGSSL 118
Cdd:PRK12561 138 AATKFILYTALASIFILVAGLALALSGDTftFDLAELGaksYPLALELLLyagflIAFGVKLPIFPLHTWLPDAHGEASA 217

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 350430919 119 TTAMLLSTVM-KLPPTTL------LLTSSHSLNPTLLTTMSIMSIALGGWMGLNQTQTRKIMAFSSISHLGWMMTTI 188
Cdd:PRK12561 218 PVSMILAGVLlKMGGYALirfnvqMLPDAHVYFAPALAILGVVNIIYGALNAFAQDNVKRRLAYSSVSHMGFVLLGI 294
PRK08375 PRK08375
putative monovalent cation/H+ antiporter subunit D; Reviewed
 27-292 2.67e-08

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 236251 [Multi-domain]  Cd Length: 487  Bit Score: 54.89  E-value: 2.67e-08
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 350430919  27 LEINTLSIIPMISKSHHPRAIEAATKYFLVQATASTLVLFSSTANAQHTGQWDITQLT--YPPACALLT------IAIAI 98
Cdd:PRK08375 135 LEIMSLSSYALVAMGGDRRALAAARKYLIVGLIGSTFLLIGVGLLYGVTGTLNMADLAgaLAENPTVVTafgfvlLALAL 214

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 350430919  99 KLGLTPFHFWFPEVLQG-SSLTTAMLLSTVMKLPPTTLLLTSSHSLNP---------TLLTTMSIMSIALGGWMGLNQTQ 168
Cdd:PRK08375 215 KAAVFPLHTWLPRAYPAaPPVVTALLSGLVTKVAVYALIRIYFTVFGGdfrfalglgWLLAVLALLSMLVGSLAALGQDD 294

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 350430919 169 TRKIMAFSSISHLGWMMTTITYNPKLTLLAFLTYT----LMTSSIFLT----MNTTNTLKLSTLMIAWTKAPMLSTTLML 240
Cdd:PRK08375 295 VKRVLAYSTVSQMGYILLGLALLTPLALAAGLLHLlhhaLMKGALFLAagaiEVTYGTRRLSELSGLGRRMPLTAAAFAV 374

                        250       260       270       280       290
                 ....*....|....*....|....*....|....*....|....*....|..
gi 350430919 241 TLLSLSGLPPLTGFLPKWLIMQELIKQETTTTATTISTLSLLGLFFYLRLAY 292
Cdd:PRK08375 375 ASLSLIGVPPTSGFVSKWYLVVGAVEAGQWLVLAVLLASSLLALLYFLRIWY 426
PRK06458 PRK06458
hydrogenase 4 subunit F; Validated
 13-207 8.86e-08

hydrogenase 4 subunit F; Validated


Pssm-ID: 235805 [Multi-domain]  Cd Length: 490  Bit Score: 53.40  E-value: 8.86e-08
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 350430919  13 LTITSNHWATAWAGLEINTLSIIPMISKSHHPRAIEAATKYFLV------QATASTLVLFSS--------------TANA 72
Cdd:PRK06458 123 LALTSNNLGLMWVAIEATTLSSALLVGIYRTRASLEAAWKYIIIcsvgvaFALFGTILVYANaatvmgdgemailwTELL 202

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 350430919  73 QHTGQWDITQLTYppACALLTIAIAIKLGLTPFHFWFPEV-LQGSSLTTAMLLSTVMK------LPPTTLLLTSSHSLNP 145
Cdd:PRK06458 203 KHASLLDPTLMKL--AFVFLLIGFGTKVGLFPMHAWLPDAhSEAPSPVSALLSGVLLNvalyavLRYYILIDAAIGSDFP 280

                        170       180       190       200       210       220
                 ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 350430919 146 -TLLTTMSIMSIALGGWMGLNQTQTRKIMAFSSISHLGWMMTTITYNPKLTLLAFLTYTLMTS 207
Cdd:PRK06458 281 gRLLLIFGLLSVLVAAFFLLRQRDIKRLFAYSSIEHMGLIAFALGIGGPLGIFAALLHMLNHS 343
PRK05846 PRK05846
NADH:ubiquinone oxidoreductase subunit M; Reviewed
 32-185 1.23e-07

NADH:ubiquinone oxidoreductase subunit M; Reviewed


Pssm-ID: 235622 [Multi-domain]  Cd Length: 497  Bit Score: 52.90  E-value: 1.23e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 350430919  32 LSIIPM---ISKSHHPRAIEAATKYFLVQATASTL------VLFSSTANAQHTGQW-DITQLTYPPACALLT-----IAI 96
Cdd:PRK05846 142 AMLIPMyflIGVWGGKNRIYAATKFFLYTLLGSLLmlvaiiYLVVVYYNATGTFDIaDLLNLPLPPGVQYWLflaffIAF 221

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 350430919  97 AIKLGLTPFHFWFPEVLQGSSLTTAMLLSTVM-----------KLPpttLLLTSSHSLNPtLLTTMSIMSIALGGWMGLN 165
Cdd:PRK05846 222 AVKMPMFPLHTWLPDAHVQAPTAGSVLLAGILlkmgaygllrfSLP---LFPDASHEFAP-IIITLGVIAIIYGALVALA 297

                        170       180
                 ....*....|....*....|
gi 350430919 166 QTQTRKIMAFSSISHLGWMM 185
Cdd:PRK05846 298 QTDIKKLIAYSSISHMGFVT 317
NDH_I_M TIGR01972
proton-translocating NADH-quinone oxidoreductase, chain M; This model describes the 13th ...
 44-185 2.65e-07

proton-translocating NADH-quinone oxidoreductase, chain M; This model describes the 13th (based on E. coli) structural gene, M, of bacterial NADH dehydrogenase I, as well as chain 4 of the corresponding mitochondrial complex I and of the chloroplast NAD(P)H dehydrogenase complex. [Energy metabolism, Electron transport]


Pssm-ID: 273903 [Multi-domain]  Cd Length: 481  Bit Score: 51.86  E-value: 2.65e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 350430919   44 PRAIEAATKYFLVQATASTLVLFSSTANA-QHTGQWDIT---QLTYPPACALLT-----IAIAIKLGLTPFHFWFPEV-L 113
Cdd:TIGR01972 152 PNRIYAAMKFFLYTLAGSLLMLLAILGLYfLGGGTFDLLellNLPLPFGVQTWLflaffIAFAVKVPLFPLHTWLPDAhV 231

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 350430919  114 QGSSLTTAMLLSTVMKLPPTTLLLTS-------SHSLNPtLLTTMSIMSIALGGWMGLNQTQTRKIMAFSSISHLGWMM 185
Cdd:TIGR01972 232 EAPTAGSVILAGVLLKMGTYGFLRFNlplfpdaSLYFAP-VLAALGVIAIIYGALIALAQTDIKRLIAYSSISHMGFVL 309
ndhB CHL00049
NADH dehydrogenase subunit 2
 45-257 2.84e-06

NADH dehydrogenase subunit 2


Pssm-ID: 176990 [Multi-domain]  Cd Length: 494  Bit Score: 48.85  E-value: 2.84e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 350430919  45 RAIEAATKYFLVQATASTLVL--FSST--ANAQHTGQWDI------TQLTYPPAC----ALLTIAIAIKLGLTPFHFWFP 110
Cdd:CHL00049 159 RSNEATMKYLLMGGASSSILVygFSWLygLSGGEIELQEIvnglinTQMYNSPGIsialIFITVGIGFKLSLAPFHQWTP 238

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 350430919 111 EVLQGSSLTTAMLLSTVMK---LPPTTLLLTSSHSLNPT----LLTTMSIMSIALGGWMGLNQTQTRKIMAFSSISHLGW 183
Cdd:CHL00049 239 DVYEGSPTPVVAFLSVTSKvaaSALATRIFDIPFYFSSNewhlLLEILAILSMILGNLIAITQTSMKRMLAYSSIGQIGY 318

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 350430919 184 MMT-TITYNPKLTLLAFLTYTLmtssIFLTMN-------TTNTLKLSTLMI-----AWTKAPMLSTTLMLTLLSLSGLPP 250
Cdd:CHL00049 319 VIIgIIVGDSNDGYASMITYML----FYIFMNlgtfaciVLFGLRTGTDNIrdyagLYTKDPFLALSLALCLLSLGGIPP 394


                 ....*..
gi 350430919 251 LTGFLPK 257
Cdd:CHL00049 395 LAGFFGK 401
PRK12649 PRK12649
putative monovalent cation/H+ antiporter subunit A; Reviewed
 42-190 1.64e-05

putative monovalent cation/H+ antiporter subunit A; Reviewed


Pssm-ID: 183649 [Multi-domain]  Cd Length: 789  Bit Score: 46.75  E-value: 1.64e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 350430919  42 HHPRAIEAATKYFLVQATASTLVLFSSTANAQHTGQWDITQLTYPPAC--------------ALLTIAIAIKLGLTPFHF 107
Cdd:PRK12649 156 HRPESVYGATKSLLITAGGGLFMFAGFLLLHVITGTYDIATILQDSELienikghplflitlILIFIGAAAKSAQGPFYI 235

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 350430919 108 WFPEVLQGSSLTTAMLLSTVMKLPPTTLLLTSSHSLNPT-----LLTTMSIMSIALGGWMGLNQTQTRKIMAFSSISHLG 182
Cdd:PRK12649 236 WLPNAMEAPTPVSAFLHSATMVKAGVYLVARIHPIFSGTeawfiLVSGTGMITMVLAGFLAFRQTDIKAILAYSTISQLA 315


                 ....*...
gi 350430919 183 WMMTTITY 190
Cdd:PRK12649 316 YLMTMYGY 323
PRK08376 PRK08376
putative monovalent cation/H+ antiporter subunit D; Reviewed
 27-260 2.82e-05

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 236252 [Multi-domain]  Cd Length: 521  Bit Score: 45.86  E-value: 2.82e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 350430919  27 LEINTLSIIPMIS-KSHHPRAIEAATKYFLVQATASTLVLFsstANAQHTGQWDITQLTYPP-------------ACALL 92
Cdd:PRK08376 150 LEIMSIASYALVAfRNDTWEAIEAGIKYMFVGSLASSMVLL---GIALLYGQYGTLNMAYLAvkmsenptvvakiALALF 226

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 350430919  93 TIAIAIKLGLTPFHFWFPEVLQG--SSLTTAMLLSTVMKLPPTTLLLTSSHSLNPTLLTTMSIMSI------ALGGWMGL 164
Cdd:PRK08376 227 IAGLAMKSGAVPVHMWLPDAYPAapSSISAMLLVIKQAGLYALARVLFSIYGPAINLATVGWVIIIlgcltmFVGVAMAV 306

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 350430919 165 NQTQTRKIMAFSSISHLGWMM------TTITYNPKLTLLAFLT----------YTLMTSSIFLT----MNTTNTLKLSTL 224
Cdd:PRK08376 307 VQKDVKRLLAYHSVSQIGYMLlglgvgLAALGDPAMASYGEIAlaggiyhivnHALYKALLFLTagavIYETGTRNLNEL 386

                        250       260       270
                 ....*....|....*....|....*....|....*.
gi 350430919 225 MIAWTKAPMLSTTLMLTLLSLSGLPPLTGFLPKWLI 260
Cdd:PRK08376 387 GGLARTMPKTTIAFLIGAAAIVGLPPFNGFASKWLI 422
PRK12650 PRK12650
DUF4040 family protein;
104-212 5.10e-05

DUF4040 family protein;


Pssm-ID: 237158 [Multi-domain]  Cd Length: 962  Bit Score: 45.03  E-value: 5.10e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 350430919 104 PFHFWFPEVLQGSSLTTAMLLSTVMKLPPTTLLLTSSHSL--NPT---LLTTMSIMSIALGGWMGLNQTQTRKIMAFSSI 178
Cdd:PRK12650 226 PFHFWLPEAMAAITPVSAFLHAAAVVKAGIYLLLRFSPVFhdVAVwnwLLIIVGMITALMGAVFAVQKTDLKKLTAYSTV 305

                         90       100       110
                 ....*....|....*....|....*....|....*...
gi 350430919 179 SHLGWMMTTITYNPKLTLLAFLTYT----LMTSSIFLT 212
Cdd:PRK12650 306 SQLGWIVATIGVGTPFALTAAVVHTlahaLFKSSLFML 343
PRK02504 PRK02504
NAD(P)H-quinone oxidoreductase subunit N;
44-257 5.70e-05

NAD(P)H-quinone oxidoreductase subunit N;


Pssm-ID: 235044 [Multi-domain]  Cd Length: 513  Bit Score: 44.66  E-value: 5.70e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 350430919  44 PRAIEAATKYFLVQATASTLVLFSST---------ANAQHTGQWDITQLTYPPACALLTIA--IAIKLGLTPFHFWFPEV 112
Cdd:PRK02504 157 PRSNEAALKYLLIGAASSAIFLYGSSllyglsggsTQLSAIALALITSPSLGLALALVFVIagIAFKISAVPFHQWTPDV 236

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 350430919 113 LQGSSLTTAMLLSTVMKLPPTTL---LLTSSHSLNPT----LLTTMSIMSIALGGWMGLNQTQTRKIMAFSSISHLGWMM 185
Cdd:PRK02504 237 YEGSPTPVVAFLSVGSKAAGFALairLLVTAFPSFDEqwklLFTALAILSMVLGNVVALAQTSMKRMLAYSSIGQAGFVM 316

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 350430919 186 TTITYNPKLTLLAFLTYTLmtssIFLTMN------------TTNTLKLSTLMIAWTKAPMLSTTLMLTLLSLSGLPPLTG 253
Cdd:PRK02504 317 IGLVAGTEAGYASMVFYLL----AYLFMNlgafacvilfslRTGTDQISDYAGLYQKDPLLTLGLSLCLLSLGGIPPLAG 392


                 ....
gi 350430919 254 FLPK 257
Cdd:PRK02504 393 FFGK 396
PRK08668 PRK08668
NADH dehydrogenase subunit M; Validated
 17-267 5.79e-05

NADH dehydrogenase subunit M; Validated


Pssm-ID: 236332 [Multi-domain]  Cd Length: 610  Bit Score: 44.60  E-value: 5.79e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 350430919  17 SNHWATAWAGLEINTLS---IIPMISKshhpRAIEAATKYFLVQATASTLVLFSSTANAQHTGQWDI----------TQL 83
Cdd:PRK08668 117 ANDLLTLYIFWEIMTFSsfmMVPMGKK----ESRKASLKYFVLSAIGAYAMLYAIFLIYAKTGTFDFadisqglindTST 192

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 350430919  84 TYPPACALLTIAIAI-KLGLTPFHFWFPE-----------VLQGS-SLTTAMLLSTVMKLPPTTLLLT-----SSHSLNP 145
Cdd:PRK08668 193 GFALIVFLFLLAFGVaKAGIFPLHVWAPDayseapqsfsaVLSGQlSKLGAYGFLLVLYVLPGTKLFSefgtyRGVPLFN 272

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 350430919 146 TLLTTMSIMSIALGGWMGLNQTQTRKIMAFSSISHLGWMMTTITYnpkLTLLAF-------LTYTLMTSSIFLTMNT--- 215
Cdd:PRK08668 273 YILAWLGNISIIVGTLMAILQEDIKKLIAYSSVANGGYILVGLGL---GTSLGFagglfhvFNHALFKGLFFLIFAAviy 349

                        250       260       270       280       290
                 ....*....|....*....|....*....|....*....|....*....|...
gi 350430919 216 -TNTLKLSTLMIAWTKAPMLSTTLMLTLLSLSGLPPLTGFLPKWLIMQELIKQ 267
Cdd:PRK08668 350 rTGTTKISEMGGLIEKMPFTFAMYLVAIISLAGIPPMSGFASKWLIFEALISK 402
PRK06473 PRK06473
NADH-quinone oxidoreductase subunit M;
90-198 1.64e-04

NADH-quinone oxidoreductase subunit M;


Pssm-ID: 235810 [Multi-domain]  Cd Length: 500  Bit Score: 43.15  E-value: 1.64e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 350430919  90 ALLTIAIAIKLGLTPFHFWFPEVLQGSSLTTAMLLSTVMKLPPTTLLLTSSHSLNPTL-------LTTMSIMSIALGGWM 162
Cdd:PRK06473 209 APILVGFGIKIPLVPFHTWLPDAHVEASTPVSVLLAGVLLKLGTYGLLRFGVGLFPEAwvylapwLATWAVVSVLYGASC 288

                         90       100       110
                 ....*....|....*....|....*....|....*.
gi 350430919 163 GLNQTQTRKIMAFSSISHLGWMMTTITYNPKLTLLA 198
Cdd:PRK06473 289 AIAQKDMKKMVAYSSIGHMGYILLAAAAATPLSILA 324
PRK02546 PRK02546
NAD(P)H-quinone oxidoreductase subunit 4; Provisional
 49-222 2.46e-04

NAD(P)H-quinone oxidoreductase subunit 4; Provisional


Pssm-ID: 235050 [Multi-domain]  Cd Length: 525  Bit Score: 42.77  E-value: 2.46e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 350430919  49 AATKYFLVQATASTLVLFSSTANAQHTG--QWDITQL---TYPPACALLT-----IAIAIKLGLTPFHFWFPEVLQGSSL 118
Cdd:PRK02546 166 AATKFILYTAGSSLFILLAALAMAFYGDtpTFDMTALaakDFGLGFQLLCyagllIAYGVKLPIVPLHTWLPDAHGEATA 245

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 350430919 119 TTAMLLSTVM-KLPPTTLL------LTSSHSLNPTLLTTMSIMSIALGGWMGLNQTQTRKIMAFSSISHLGWMMTTITYN 191
Cdd:PRK02546 246 PVHMLLAGILlKMGGYALLrmnagmLPDAHAQFAPLLIVLGVVNIIYAALTSFAQRNLKRKIAYSSISHMGFVLIGIGSF 325

                        170       180       190
                 ....*....|....*....|....*....|....*....
gi 350430919 192 PKL----TLLAFLTYTLMTSSIFL----TMNTTNTLKLS 222
Cdd:PRK02546 326 TDLgtsgAMLQMISHGLIGASLFFlvgaTYDRTHTLMLD 364
NuoL COG1009
Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ ...
 42-185 4.21e-04

Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ antiporter, MnhA subunit [Energy production and conversion]; Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ antiporter, MnhA subunit is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440633 [Multi-domain]  Cd Length: 608  Bit Score: 42.06  E-value: 4.21e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 350430919  42 HHPRAIEAATKYFLVQATASTLVLFSSTANAQHTGQWDITQL-----------TYPPACALLTIAIAIKLGLTPFHFWFP 110
Cdd:COG1009  156 EKPSARRAARKAFLVTRVGDLGLLLGILLLGAIAGTLNFSELlaaaptilsspLLTLILLLLLLGAFGKSAQFPLHFWLP 235

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 350430919 111 EVLQG----SSL----T--TA-----MLLSTVMKLPPTTLlltsshslnpTLLTTMSIMSIALGGWMGLNQTQTRKIMAF 175
Cdd:COG1009  236 DAMEGptpvSALlhaaTmvKAgvyllARLSPLFALSPVWL----------TVVAIIGAITALFAALIALAQTDIKRVLAY 305

                        170
                 ....*....|
gi 350430919 176 SSISHLGWMM 185
Cdd:COG1009  306 STVSQLGYMF 315
PRK07234 PRK07234
putative monovalent cation/H+ antiporter subunit D; Reviewed
 27-265 1.53e-03

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 235978 [Multi-domain]  Cd Length: 470  Bit Score: 40.32  E-value: 1.53e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 350430919  27 LEINTLSIIPMISKSHHPRAIEAATKYFLVQATASTLVLFSSTANAQHTGQWDITQLTY--PPACALLTIAIAIKLGLTP 104
Cdd:PRK07234 123 LEVLSIATFLLVAYPRTDRAIWVGLRYLFYSNVAMLFYLIGAVLVYQANGTFAFSGLATadPEAFALIALGLLVKGGIFV 202

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 350430919 105 FHFWFPEVLQGSSLTTAMLLSTVMKLPPTTLLLTSSHSLNPT--LLTTMSIMSIALGGWMGLNQTQTRKIMAFSSISHLG 182
Cdd:PRK07234 203 SGLWLPLTHSEAEPPVSALLSGVVVKAGVFPLVRCALDVPGLdlIVRIFGVGTALLGVLFALLEKDLKRMLAFSTISQLG 282

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 350430919 183 WmmttITYNPKLTLLAFLTYTLMTSSIFL---TMNTTNTLKLSTLMIAWTKAPMLSTTLMLTLLSLsglpPLTGFLPKWL 259
Cdd:PRK07234 283 F----ILAAPLVGGLYALAHGLVKSTLFLcagALPSRNFTELISQMLGIGKWIPLTMASFSIAGFP----LLAGFVSKVL 354


                 ....*.
gi 350430919 260 IMQELI 265
Cdd:PRK07234 355 TLKNLL 360
PRK12646 PRK12646
DUF4040 family protein;
85-188 1.61e-03

DUF4040 family protein;


Pssm-ID: 183646 [Multi-domain]  Cd Length: 800  Bit Score: 40.12  E-value: 1.61e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 350430919  85 YPPACALLTIAIAIKLGLTPFHFWFPEVLQGSSLTTAMLLSTVMKLPPTTLLLTSSHSLNPT-----LLTTMSIMSIALG 159
Cdd:PRK12646 209 FIPMIFMFLLGAFTKSAQFPFHIWLPRAMAAPTPVSAYLHSATMVKAGIFLLFRFTPLLGLSnmyiyIVTFVGLITMLFG 288

                         90       100
                 ....*....|....*....|....*....
gi 350430919 160 GWMGLNQTQTRKIMAFSSISHLGWMMTTI 188
Cdd:PRK12646 289 SITALKQWDLKGILAYSTISQLGMIMAMV 317
ndhD CHL00011
NADH dehydrogenase subunit 4
 94-188 1.63e-03

NADH dehydrogenase subunit 4


Pssm-ID: 176954 [Multi-domain]  Cd Length: 498  Bit Score: 39.93  E-value: 1.63e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 350430919  94 IAIAIKLGLTPFHFWFPEVLQGSSLTTAMLLSTVM-KLPPTTL------LLTSSHSLNPTLLTTMSIMSIALGGWMGLNQ 166
Cdd:CHL00011 219 IAYAVKLPIIPLHTWLPDTHGEAHYSTCMLLAGILlKMGAYGLirinmeLLPHAHSIFSPWLVIVGAIQIIYAASTSLGQ 298

                         90       100
                 ....*....|....*....|..
gi 350430919 167 TQTRKIMAFSSISHLGWMMTTI 188
Cdd:CHL00011 299 RNLKKRIAYSSVSHMGFIIIGI 320
ND5 MTH00207
NADH dehydrogenase subunit 5; Provisional
 76-211 2.53e-03

NADH dehydrogenase subunit 5; Provisional


Pssm-ID: 164753 [Multi-domain]  Cd Length: 572  Bit Score: 39.75  E-value: 2.53e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 350430919  76 GQWDITQLTYPPACALLTIAIAI----KLGLTPFHFWFPEVLQGSSLTTAMLLSTVMKLPPTTLL------LTSSHSLNP 145
Cdd:MTH00207 165 GHWSITNMWQTDMNNYIALSIMIaamtKSAQMPFSSWLPAAMAAPTPVSALVHSSTLVTAGVFLLirfypfLSSTYWFNP 244

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 350430919 146 TLLTTMSiMSIALGGWMGLNQTQTRKIMAFSSISHLGWMMTTITYN-PKLTLLAFLTYTLMTSSIFL 211
Cdd:MTH00207 245 ALLLTAS-LTMLMAGLSAMTECDMKKIIALSTLSQLGVMMASLGLGmPKLALFHLITHALFKALLFV 310
PRK08667 PRK08667
hydrogenase membrane subunit; Validated
 53-188 5.04e-03

hydrogenase membrane subunit; Validated


Pssm-ID: 236331 [Multi-domain]  Cd Length: 644  Bit Score: 38.56  E-value: 5.04e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 350430919  53 YFLVQATASTLVLFSSTANA-QHTGQWDITQLTYPPAC-----ALLTIAIAIKLGLTPFHFWFPEVLQGSSLTTAMLLST 126
Cdd:PRK08667 166 FYFVMTQLSTVFLMLGIIVLfIQTGSFELSPLGASAGIlslvfLLLFLGFGIKAGIIPFHKWLPYAHPASPSNVSALMSG 245

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 350430919 127 VM-KLPPTTLLLTSSHSLNP-----TLLTTMSIMSIALGGWMGLNQTQTRKIMAFSSISHLGWMMTTI 188
Cdd:PRK08667 246 VMlKVAVYGLVRFLMDVLSPelwwgVLILLAGSISALLGVIYALKEHDLKGLLAYSSIENIGIILMGI 313
PRK12662 PRK12662
putative monovalent cation/H+ antiporter subunit D; Reviewed
 146-266 5.93e-03

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 183662 [Multi-domain]  Cd Length: 492  Bit Score: 38.18  E-value: 5.93e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 350430919 146 TLLTTMSIMSIALGGWMGLNQTQTRKIMAFSSISHLGWMMTTITYNPKLTLLAFLTY----TLMTSSIFLTMNTT----N 217
Cdd:PRK12662 280 NVFMILAALAIVFGSVLAILSKDIKRIFAYSSISHIGYIILAVSLNTYYGLAAAVAYivnhSIVKSALFMVSGSIsyhfG 359

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|....*....
gi 350430919 218 TLKLSTLMIAWTKAPMLSTTLMLTLLSLSGLPPLTGFLPKWLIMQELIK 266
Cdd:PRK12662 360 TTKLEDCLNLWKSMPKITLAFVLLSLSLIGMPPTSGFVAKWYILDAFIK 408
ND4 MTH00226
NADH dehydrogenase subunit 4; Provisional
 94-188 5.99e-03

NADH dehydrogenase subunit 4; Provisional


Pssm-ID: 214466 [Multi-domain]  Cd Length: 505  Bit Score: 38.36  E-value: 5.99e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 350430919  94 IAIAIKLGLTPFHFWFPEVLQGSSLTTAMLLSTV-MKLPPTTLLLTS-------SHSLNPTLLtTMSIMSIALGGWMGLN 165
Cdd:MTH00226 238 LAMAVKIPIFPFHIWLPKAHVEAPVAGSVLLAGIlLKLGGYGLVRLSwpilplgAQNLAPAVI-AMGIVGIVYGSFATCR 316

                         90       100
                 ....*....|....*....|...
gi 350430919 166 QTQTRKIMAFSSISHLGWMMTTI 188
Cdd:MTH00226 317 QIDVKRLVAYSSVAHMGLVSITL 339
PRK07363 PRK07363
NADH-quinone oxidoreductase subunit M;
90-197 7.21e-03

NADH-quinone oxidoreductase subunit M;


Pssm-ID: 180945 [Multi-domain]  Cd Length: 501  Bit Score: 38.15  E-value: 7.21e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 350430919  90 ALLTIAIAIKLGLTPFHFWFPEVLQGSSLTTAMLLSTVMKLPPTTLLLTSSHSLNPTL-------LTTMSIMSIALGGWM 162
Cdd:PRK07363 209 TGLLLGFGIKIPLVPLHTWLPDAYTEASPAVAILLGGVLAKLGTYGLLRFGLQLFPQTwslvapgLAIIGTISVIYGALS 288

                         90       100       110
                 ....*....|....*....|....*....|....*
gi 350430919 163 GLNQTQTRKIMAFSSISHLGWMMTTITYNPKLTLL 197
Cdd:PRK07363 289 AIAQKDIKRMVAYSSIGHMGYILVAAAAGTQLSLL 323
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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