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Conserved domains on  [gi|34811370]
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Chain B, Troponin T

Protein Classification

troponin( domain architecture ID 12013160)

troponin such as troponin I (TnI, inhibitory) and T (TnT, tropomyosin binding) subunits, which together with troponin C (TnC, Ca2+ binding) subunit, form the troponin complex that regulates Ca2+ induced muscle contraction

CATH:  1.20.5.350
Gene Ontology:  GO:0005861|GO:0003009
PubMed:  18154728

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
Troponin pfam00992
Troponin; Troponin (Tn) contains three subunits, Ca2+ binding (TnC), inhibitory (TnI), and ...
 8-91 1.61e-05

Troponin; Troponin (Tn) contains three subunits, Ca2+ binding (TnC), inhibitory (TnI), and tropomyosin binding (TnT). this Pfam contains members of the TnT subunit. Troponin is a complex of three proteins, Ca2+ binding (TnC), inhibitory (TnI), and tropomyosin binding (TnT). The troponin complex regulates Ca++ induced muscle contraction. This family includes troponin T and troponin I. Troponin I binds to actin and troponin T binds to tropomyosin.


:

Pssm-ID: 460018 [Multi-domain]  Cd Length: 132  Bit Score: 40.63  E-value: 1.61e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 34811370     8 KQAQTERKSGKRQTEREKKKkILAERRKVLAIDHLNEDQLREKAKELWQTIYNLEAEKFDLQEKFKQQKYEINVLRNRIN 87
Cdd:pfam00992  10 QKAAEELEFEQEKKEEEKLR-YLAERIPPLRLRGLSAEQLQELCEELHERIDKLEEERYDIEEKVAKKDKEINDLKKKVN 88


                  ....
gi 34811370    88 DNQK 91
Cdd:pfam00992  89 DLRG 92
 
Name Accession Description Interval E-value
Troponin pfam00992
Troponin; Troponin (Tn) contains three subunits, Ca2+ binding (TnC), inhibitory (TnI), and ...
 8-91 1.61e-05

Troponin; Troponin (Tn) contains three subunits, Ca2+ binding (TnC), inhibitory (TnI), and tropomyosin binding (TnT). this Pfam contains members of the TnT subunit. Troponin is a complex of three proteins, Ca2+ binding (TnC), inhibitory (TnI), and tropomyosin binding (TnT). The troponin complex regulates Ca++ induced muscle contraction. This family includes troponin T and troponin I. Troponin I binds to actin and troponin T binds to tropomyosin.


Pssm-ID: 460018 [Multi-domain]  Cd Length: 132  Bit Score: 40.63  E-value: 1.61e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 34811370     8 KQAQTERKSGKRQTEREKKKkILAERRKVLAIDHLNEDQLREKAKELWQTIYNLEAEKFDLQEKFKQQKYEINVLRNRIN 87
Cdd:pfam00992  10 QKAAEELEFEQEKKEEEKLR-YLAERIPPLRLRGLSAEQLQELCEELHERIDKLEEERYDIEEKVAKKDKEINDLKKKVN 88


                  ....
gi 34811370    88 DNQK 91
Cdd:pfam00992  89 DLRG 92
ESP1 COG5155
Separase, a protease involved in sister chromatid separation [Cell division and chromosome ...
 6-97 6.99e-03

Separase, a protease involved in sister chromatid separation [Cell division and chromosome partitioning / Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 227484 [Multi-domain]  Cd Length: 1622  Bit Score: 34.59  E-value: 6.99e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 34811370    6 IQKQAQTERKSGKRQTEREKKKKILAERRkvlAIDHLNEdQLREKAKELW----QTIYNLEAEKFDLQEKFKQQKYEInv 81
Cdd:COG5155 1226 INRSNQNLALKDEMSNLREIRKTWWLERF---ALDRPSQ-QLLDNIEISWrlgrYGVFSPYCIDGSLFIKFFKGFIRI-- 1299

                         90
                 ....*....|....*.
gi 34811370   82 lrnrINDNQKVSKTRG 97
Cdd:COG5155 1300 ----DKDNFRGAKTRM 1311
 
Name Accession Description Interval E-value
Troponin pfam00992
Troponin; Troponin (Tn) contains three subunits, Ca2+ binding (TnC), inhibitory (TnI), and ...
 8-91 1.61e-05

Troponin; Troponin (Tn) contains three subunits, Ca2+ binding (TnC), inhibitory (TnI), and tropomyosin binding (TnT). this Pfam contains members of the TnT subunit. Troponin is a complex of three proteins, Ca2+ binding (TnC), inhibitory (TnI), and tropomyosin binding (TnT). The troponin complex regulates Ca++ induced muscle contraction. This family includes troponin T and troponin I. Troponin I binds to actin and troponin T binds to tropomyosin.


Pssm-ID: 460018 [Multi-domain]  Cd Length: 132  Bit Score: 40.63  E-value: 1.61e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 34811370     8 KQAQTERKSGKRQTEREKKKkILAERRKVLAIDHLNEDQLREKAKELWQTIYNLEAEKFDLQEKFKQQKYEINVLRNRIN 87
Cdd:pfam00992  10 QKAAEELEFEQEKKEEEKLR-YLAERIPPLRLRGLSAEQLQELCEELHERIDKLEEERYDIEEKVAKKDKEINDLKKKVN 88


                  ....
gi 34811370    88 DNQK 91
Cdd:pfam00992  89 DLRG 92
ESP1 COG5155
Separase, a protease involved in sister chromatid separation [Cell division and chromosome ...
 6-97 6.99e-03

Separase, a protease involved in sister chromatid separation [Cell division and chromosome partitioning / Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 227484 [Multi-domain]  Cd Length: 1622  Bit Score: 34.59  E-value: 6.99e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 34811370    6 IQKQAQTERKSGKRQTEREKKKKILAERRkvlAIDHLNEdQLREKAKELW----QTIYNLEAEKFDLQEKFKQQKYEInv 81
Cdd:COG5155 1226 INRSNQNLALKDEMSNLREIRKTWWLERF---ALDRPSQ-QLLDNIEISWrlgrYGVFSPYCIDGSLFIKFFKGFIRI-- 1299

                         90
                 ....*....|....*.
gi 34811370   82 lrnrINDNQKVSKTRG 97
Cdd:COG5155 1300 ----DKDNFRGAKTRM 1311
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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