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Conserved domains on  [gi|347453646|gb|AEO95421|]
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ATP7A, partial [Graphiurus murinus]

Protein Classification

heavy metal-associated domain-containing protein( domain architecture ID 10086127)

heavy metal-associated domain-containing protein such as heavy metal-associated isoprenylated plant proteins and Saccharomyces cerevisiae copper transport protein ATX1, which shuttles copper to the transport ATPase CCC2 and protects against oxygen toxicity

Gene Ontology:  GO:0046872
PubMed:  12594858|10404590|8091505|9437429

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
HMA cd00371
Heavy-metal-associated domain (HMA) is a conserved domain of approximately 30 amino acid ...
 168-225 1.81e-17

Heavy-metal-associated domain (HMA) is a conserved domain of approximately 30 amino acid residues found in a number of proteins that transport or detoxify heavy metals, for example, the CPx-type heavy metal ATPases and copper chaperones. HMA domain contains two cysteine residues that are important in binding and transfer of metal ions, such as copper, cadmium, cobalt and zinc. In the case of copper, stoichiometry of binding is one Cu+ ion per binding domain. Repeats of the HMA domain in copper chaperone has been associated with Menkes/Wilson disease due to binding of multiple copper ions.


:

Pssm-ID: 238219 [Multi-domain]  Cd Length: 63  Bit Score: 73.41  E-value: 1.81e-17
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|....*...
gi 347453646 168 VINIDGMTCHSCVQSIEGVISKKAGVKSIRVSLANSNGTVEYDPlLTSPETLREAIED 225
Cdd:cd00371    1 ELSVEGMTCAGCVSKIEKALEKLPGVESVEVDLETGKATVEYDP-EVSPEELLEAIED 57
HMA cd00371
Heavy-metal-associated domain (HMA) is a conserved domain of approximately 30 amino acid ...
 68-125 2.50e-15

Heavy-metal-associated domain (HMA) is a conserved domain of approximately 30 amino acid residues found in a number of proteins that transport or detoxify heavy metals, for example, the CPx-type heavy metal ATPases and copper chaperones. HMA domain contains two cysteine residues that are important in binding and transfer of metal ions, such as copper, cadmium, cobalt and zinc. In the case of copper, stoichiometry of binding is one Cu+ ion per binding domain. Repeats of the HMA domain in copper chaperone has been associated with Menkes/Wilson disease due to binding of multiple copper ions.


:

Pssm-ID: 238219 [Multi-domain]  Cd Length: 63  Bit Score: 68.02  E-value: 2.50e-15
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|....*...
gi 347453646  68 TFIIDGMHCKSCVSNIESTLSTLQYVSSVVVSLENRSAIVTFNAsSVTPEMLRKAIEA 125
Cdd:cd00371    1 ELSVEGMTCAGCVSKIEKALEKLPGVESVEVDLETGKATVEYDP-EVSPEELLEAIED 57
copA super family cl32553
copper-exporting P-type ATPase CopA;
9-131 8.88e-06

copper-exporting P-type ATPase CopA;


The actual alignment was detected with superfamily member PRK10671:

Pssm-ID: 182635 [Multi-domain]  Cd Length: 834  Bit Score: 45.89  E-value: 8.88e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 347453646   9 TVEEIKKQIEAMGFPAYI---KKQPkyLKLGAIDVERLKNTPVKSPEGSQQRSPSYTndttatFIIDGMHCKSCVSNIES 85
Cdd:PRK10671  48 SAEALIETIKQAGYDASVshpKAKP--LTESSIPSEALTAASEELPAATADDDDSQQ------LLLSGMSCASCVSRVQN 119

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|....*.
gi 347453646  86 TLSTLQYVSSVVVSLENRSAIVTFNASsvtPEMLrkaIEAVSPGQY 131
Cdd:PRK10671 120 ALQSVPGVTQARVNLAERTALVMGSAS---PQDL---VQAVEKAGY 159
 
Name Accession Description Interval E-value
HMA cd00371
Heavy-metal-associated domain (HMA) is a conserved domain of approximately 30 amino acid ...
 168-225 1.81e-17

Heavy-metal-associated domain (HMA) is a conserved domain of approximately 30 amino acid residues found in a number of proteins that transport or detoxify heavy metals, for example, the CPx-type heavy metal ATPases and copper chaperones. HMA domain contains two cysteine residues that are important in binding and transfer of metal ions, such as copper, cadmium, cobalt and zinc. In the case of copper, stoichiometry of binding is one Cu+ ion per binding domain. Repeats of the HMA domain in copper chaperone has been associated with Menkes/Wilson disease due to binding of multiple copper ions.


Pssm-ID: 238219 [Multi-domain]  Cd Length: 63  Bit Score: 73.41  E-value: 1.81e-17
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|....*...
gi 347453646 168 VINIDGMTCHSCVQSIEGVISKKAGVKSIRVSLANSNGTVEYDPlLTSPETLREAIED 225
Cdd:cd00371    1 ELSVEGMTCAGCVSKIEKALEKLPGVESVEVDLETGKATVEYDP-EVSPEELLEAIED 57
CopZ COG2608
Copper chaperone CopZ [Inorganic ion transport and metabolism];
164-225 1.55e-16

Copper chaperone CopZ [Inorganic ion transport and metabolism];


Pssm-ID: 442020 [Multi-domain]  Cd Length: 71  Bit Score: 71.09  E-value: 1.55e-16
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 347453646 164 TQETVINIDGMTCHSCVQSIEGVISKKAGVKSIRVSLANSNGTVEYDPLLTSPETLREAIED 225
Cdd:COG2608    1 MKTVTLKVEGMTCGHCVARVEKALKALDGVASVEVDLATGTATVTYDPEKVSLEDIKAAIEE 62
HMA cd00371
Heavy-metal-associated domain (HMA) is a conserved domain of approximately 30 amino acid ...
 68-125 2.50e-15

Heavy-metal-associated domain (HMA) is a conserved domain of approximately 30 amino acid residues found in a number of proteins that transport or detoxify heavy metals, for example, the CPx-type heavy metal ATPases and copper chaperones. HMA domain contains two cysteine residues that are important in binding and transfer of metal ions, such as copper, cadmium, cobalt and zinc. In the case of copper, stoichiometry of binding is one Cu+ ion per binding domain. Repeats of the HMA domain in copper chaperone has been associated with Menkes/Wilson disease due to binding of multiple copper ions.


Pssm-ID: 238219 [Multi-domain]  Cd Length: 63  Bit Score: 68.02  E-value: 2.50e-15
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|....*...
gi 347453646  68 TFIIDGMHCKSCVSNIESTLSTLQYVSSVVVSLENRSAIVTFNAsSVTPEMLRKAIEA 125
Cdd:cd00371    1 ELSVEGMTCAGCVSKIEKALEKLPGVESVEVDLETGKATVEYDP-EVSPEELLEAIED 57
HMA pfam00403
Heavy-metal-associated domain;
68-125 1.55e-14

Heavy-metal-associated domain;


Pssm-ID: 459804 [Multi-domain]  Cd Length: 58  Bit Score: 65.72  E-value: 1.55e-14
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*...
gi 347453646   68 TFIIDGMHCKSCVSNIESTLSTLQYVSSVVVSLENRSAIVTFNASSVTPEMLRKAIEA 125
Cdd:pfam00403   1 TFRVSGMHCGGCAAKVEKALSELPGVLSVSVDLATKTVTVTGDAESTKLEKLVEAIEK 58
CopZ COG2608
Copper chaperone CopZ [Inorganic ion transport and metabolism];
65-126 2.17e-14

Copper chaperone CopZ [Inorganic ion transport and metabolism];


Pssm-ID: 442020 [Multi-domain]  Cd Length: 71  Bit Score: 65.70  E-value: 2.17e-14
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 347453646  65 TTATFIIDGMHCKSCVSNIESTLSTLQYVSSVVVSLENRSAIVTFNASSVTPEMLRKAIEAV 126
Cdd:COG2608    2 KTVTLKVEGMTCGHCVARVEKALKALDGVASVEVDLATGTATVTYDPEKVSLEDIKAAIEEA 63
chaper_CopZ_Bs NF033795
copper chaperone CopZ; This model describes CopZ, a small copper chaperone, as found in ...
 166-225 2.28e-14

copper chaperone CopZ; This model describes CopZ, a small copper chaperone, as found in Bacillus subtilis and related species. A number of longer protein, such as copper-translocating P-type ATPases, contain multiple CopZ-like domains, with its signature invariant CxxC motif. CopZ from other species may be more different in sequence from this family than some of those domains of longer proteins.


Pssm-ID: 411375 [Multi-domain]  Cd Length: 66  Bit Score: 65.19  E-value: 2.28e-14
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|
gi 347453646 166 ETVINIDGMTCHSCVQSIEGVISKKAGVKSIRVSLANSNGTVEYDPLLTSPETLREAIED 225
Cdd:NF033795   1 KVTLNVEGMSCGHCVKAVEGALGELNGVSSVKVNLEEGKVDVEFDESKVTLDQIKEAIED 60
HMA pfam00403
Heavy-metal-associated domain;
168-225 2.55e-13

Heavy-metal-associated domain;


Pssm-ID: 459804 [Multi-domain]  Cd Length: 58  Bit Score: 62.25  E-value: 2.55e-13
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*...
gi 347453646  168 VINIDGMTCHSCVQSIEGVISKKAGVKSIRVSLANSNGTVEYDPLLTSPETLREAIED 225
Cdd:pfam00403   1 TFRVSGMHCGGCAAKVEKALSELPGVLSVSVDLATKTVTVTGDAESTKLEKLVEAIEK 58
TIGR00003 TIGR00003
copper ion binding protein; This model describes an apparently copper-specific subfamily of ...
 68-124 5.50e-07

copper ion binding protein; This model describes an apparently copper-specific subfamily of the metal-binding domain HMA (pfam00403). Closely related sequences outside this model include mercury resistance proteins and repeated domains of eukaryotic eukaryotic copper transport proteins. Members of this family are strictly prokaryotic. The model identifies both small proteins consisting of just this domain and N-terminal regions of cation (probably copper) transporting ATPases. [Transport and binding proteins, Cations and iron carrying compounds]


Pssm-ID: 188014 [Multi-domain]  Cd Length: 66  Bit Score: 45.61  E-value: 5.50e-07
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*..
gi 347453646   68 TFIIDGMHCKSCVSNIESTLSTLQYVSSVVVSLENRSAIVTFNASSVTPEMLRKAIE 124
Cdd:TIGR00003   3 TFQVKGMSCNHCVDKIEKFVGEIEGVSKVKVQLEKEKVVVEFDAPNVSATEICEAIL 59
PRK13748 PRK13748
putative mercuric reductase; Provisional
 166-224 9.86e-07

putative mercuric reductase; Provisional


Pssm-ID: 184298 [Multi-domain]  Cd Length: 561  Bit Score: 48.61  E-value: 9.86e-07
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|....*....
gi 347453646 166 ETVINIDGMTCHSCVQSIEGVISKKAGVKSIRVSLANSNGTVEYDPlLTSPETLREAIE 224
Cdd:PRK13748   1 MTTLKITGMTCDSCAAHVKDALEKVPGVQSADVSYPKGSAQLAIEV-GTSPDALTAAVA 58
TIGR00003 TIGR00003
copper ion binding protein; This model describes an apparently copper-specific subfamily of ...
 169-225 5.49e-06

copper ion binding protein; This model describes an apparently copper-specific subfamily of the metal-binding domain HMA (pfam00403). Closely related sequences outside this model include mercury resistance proteins and repeated domains of eukaryotic eukaryotic copper transport proteins. Members of this family are strictly prokaryotic. The model identifies both small proteins consisting of just this domain and N-terminal regions of cation (probably copper) transporting ATPases. [Transport and binding proteins, Cations and iron carrying compounds]


Pssm-ID: 188014 [Multi-domain]  Cd Length: 66  Bit Score: 42.91  E-value: 5.49e-06
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*..
gi 347453646  169 INIDGMTCHSCVQSIEGVISKKAGVKSIRVSLANSNGTVEYDPLLTSPETLREAIED 225
Cdd:TIGR00003   4 FQVKGMSCNHCVDKIEKFVGEIEGVSKVKVQLEKEKVVVEFDAPNVSATEICEAILD 60
PRK13748 PRK13748
putative mercuric reductase; Provisional
 68-138 5.94e-06

putative mercuric reductase; Provisional


Pssm-ID: 184298 [Multi-domain]  Cd Length: 561  Bit Score: 46.30  E-value: 5.94e-06
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 347453646  68 TFIIDGMHCKSCVSNIESTLSTLQYVSSVVVSLENRSAIVTFNAsSVTPEMLRKAIEAVSpgqYRVSIASE 138
Cdd:PRK13748   3 TLKITGMTCDSCAAHVKDALEKVPGVQSADVSYPKGSAQLAIEV-GTSPDALTAAVAGLG---YRATLADA 69
copA PRK10671
copper-exporting P-type ATPase CopA;
9-131 8.88e-06

copper-exporting P-type ATPase CopA;


Pssm-ID: 182635 [Multi-domain]  Cd Length: 834  Bit Score: 45.89  E-value: 8.88e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 347453646   9 TVEEIKKQIEAMGFPAYI---KKQPkyLKLGAIDVERLKNTPVKSPEGSQQRSPSYTndttatFIIDGMHCKSCVSNIES 85
Cdd:PRK10671  48 SAEALIETIKQAGYDASVshpKAKP--LTESSIPSEALTAASEELPAATADDDDSQQ------LLLSGMSCASCVSRVQN 119

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|....*.
gi 347453646  86 TLSTLQYVSSVVVSLENRSAIVTFNASsvtPEMLrkaIEAVSPGQY 131
Cdd:PRK10671 120 ALQSVPGVTQARVNLAERTALVMGSAS---PQDL---VQAVEKAGY 159
UxxU_metal_bind NF041115
metal-binding (seleno)protein; Known members of this family are selenoproteins with an ...
 163-224 2.20e-03

metal-binding (seleno)protein; Known members of this family are selenoproteins with an exceptional UXXU motif, with two selenocysteines. Known members so far derive primarily from MAGs, and have an N-terminal signal peptide N-terminal to the region represented in the seed alignment. Note that this model represents a specific clade of a more widely distributed domain that frequently appears 3 or 4 times in a single protein, so the domain-specific cutoff is critical to identification. Homologous domains, outside the scope of this model, are found in CopZ family copper chaperones and heavy metal-translocating P-type ATPases.


Pssm-ID: 469038 [Multi-domain]  Cd Length: 74  Bit Score: 35.77  E-value: 2.20e-03
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 347453646 163 LTQETVINIDGMTCHSCVQSIEGVISKKAGVKSIRVSLANSNGTVEYDPLLTSPETLREAIE 224
Cdd:NF041115   2 LAETVILAIEGMTUASUPLIAKKALEGLEGVEKADVSYKEGRAEVAFDPDKVSAAQMVDAVN 63
 
Name Accession Description Interval E-value
HMA cd00371
Heavy-metal-associated domain (HMA) is a conserved domain of approximately 30 amino acid ...
 168-225 1.81e-17

Heavy-metal-associated domain (HMA) is a conserved domain of approximately 30 amino acid residues found in a number of proteins that transport or detoxify heavy metals, for example, the CPx-type heavy metal ATPases and copper chaperones. HMA domain contains two cysteine residues that are important in binding and transfer of metal ions, such as copper, cadmium, cobalt and zinc. In the case of copper, stoichiometry of binding is one Cu+ ion per binding domain. Repeats of the HMA domain in copper chaperone has been associated with Menkes/Wilson disease due to binding of multiple copper ions.


Pssm-ID: 238219 [Multi-domain]  Cd Length: 63  Bit Score: 73.41  E-value: 1.81e-17
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|....*...
gi 347453646 168 VINIDGMTCHSCVQSIEGVISKKAGVKSIRVSLANSNGTVEYDPlLTSPETLREAIED 225
Cdd:cd00371    1 ELSVEGMTCAGCVSKIEKALEKLPGVESVEVDLETGKATVEYDP-EVSPEELLEAIED 57
CopZ COG2608
Copper chaperone CopZ [Inorganic ion transport and metabolism];
164-225 1.55e-16

Copper chaperone CopZ [Inorganic ion transport and metabolism];


Pssm-ID: 442020 [Multi-domain]  Cd Length: 71  Bit Score: 71.09  E-value: 1.55e-16
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 347453646 164 TQETVINIDGMTCHSCVQSIEGVISKKAGVKSIRVSLANSNGTVEYDPLLTSPETLREAIED 225
Cdd:COG2608    1 MKTVTLKVEGMTCGHCVARVEKALKALDGVASVEVDLATGTATVTYDPEKVSLEDIKAAIEE 62
HMA cd00371
Heavy-metal-associated domain (HMA) is a conserved domain of approximately 30 amino acid ...
 68-125 2.50e-15

Heavy-metal-associated domain (HMA) is a conserved domain of approximately 30 amino acid residues found in a number of proteins that transport or detoxify heavy metals, for example, the CPx-type heavy metal ATPases and copper chaperones. HMA domain contains two cysteine residues that are important in binding and transfer of metal ions, such as copper, cadmium, cobalt and zinc. In the case of copper, stoichiometry of binding is one Cu+ ion per binding domain. Repeats of the HMA domain in copper chaperone has been associated with Menkes/Wilson disease due to binding of multiple copper ions.


Pssm-ID: 238219 [Multi-domain]  Cd Length: 63  Bit Score: 68.02  E-value: 2.50e-15
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|....*...
gi 347453646  68 TFIIDGMHCKSCVSNIESTLSTLQYVSSVVVSLENRSAIVTFNAsSVTPEMLRKAIEA 125
Cdd:cd00371    1 ELSVEGMTCAGCVSKIEKALEKLPGVESVEVDLETGKATVEYDP-EVSPEELLEAIED 57
HMA pfam00403
Heavy-metal-associated domain;
68-125 1.55e-14

Heavy-metal-associated domain;


Pssm-ID: 459804 [Multi-domain]  Cd Length: 58  Bit Score: 65.72  E-value: 1.55e-14
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*...
gi 347453646   68 TFIIDGMHCKSCVSNIESTLSTLQYVSSVVVSLENRSAIVTFNASSVTPEMLRKAIEA 125
Cdd:pfam00403   1 TFRVSGMHCGGCAAKVEKALSELPGVLSVSVDLATKTVTVTGDAESTKLEKLVEAIEK 58
CopZ COG2608
Copper chaperone CopZ [Inorganic ion transport and metabolism];
65-126 2.17e-14

Copper chaperone CopZ [Inorganic ion transport and metabolism];


Pssm-ID: 442020 [Multi-domain]  Cd Length: 71  Bit Score: 65.70  E-value: 2.17e-14
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 347453646  65 TTATFIIDGMHCKSCVSNIESTLSTLQYVSSVVVSLENRSAIVTFNASSVTPEMLRKAIEAV 126
Cdd:COG2608    2 KTVTLKVEGMTCGHCVARVEKALKALDGVASVEVDLATGTATVTYDPEKVSLEDIKAAIEEA 63
chaper_CopZ_Bs NF033795
copper chaperone CopZ; This model describes CopZ, a small copper chaperone, as found in ...
 166-225 2.28e-14

copper chaperone CopZ; This model describes CopZ, a small copper chaperone, as found in Bacillus subtilis and related species. A number of longer protein, such as copper-translocating P-type ATPases, contain multiple CopZ-like domains, with its signature invariant CxxC motif. CopZ from other species may be more different in sequence from this family than some of those domains of longer proteins.


Pssm-ID: 411375 [Multi-domain]  Cd Length: 66  Bit Score: 65.19  E-value: 2.28e-14
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|
gi 347453646 166 ETVINIDGMTCHSCVQSIEGVISKKAGVKSIRVSLANSNGTVEYDPLLTSPETLREAIED 225
Cdd:NF033795   1 KVTLNVEGMSCGHCVKAVEGALGELNGVSSVKVNLEEGKVDVEFDESKVTLDQIKEAIED 60
ZntA COG2217
Cation-transporting P-type ATPase [Inorganic ion transport and metabolism];
165-225 1.02e-13

Cation-transporting P-type ATPase [Inorganic ion transport and metabolism];


Pssm-ID: 441819 [Multi-domain]  Cd Length: 717  Bit Score: 69.40  E-value: 1.02e-13
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 347453646 165 QETVINIDGMTCHSCVQSIEGVISKKAGVKSIRVSLANSNGTVEYDPLLTSPETLREAIED 225
Cdd:COG2217    1 ERVRLRIEGMTCAACAWLIEKALRKLPGVLSARVNLATERARVEYDPGKVSLEELIAAVEK 61
HMA pfam00403
Heavy-metal-associated domain;
168-225 2.55e-13

Heavy-metal-associated domain;


Pssm-ID: 459804 [Multi-domain]  Cd Length: 58  Bit Score: 62.25  E-value: 2.55e-13
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*...
gi 347453646  168 VINIDGMTCHSCVQSIEGVISKKAGVKSIRVSLANSNGTVEYDPLLTSPETLREAIED 225
Cdd:pfam00403   1 TFRVSGMHCGGCAAKVEKALSELPGVLSVSVDLATKTVTVTGDAESTKLEKLVEAIEK 58
ZntA COG2217
Cation-transporting P-type ATPase [Inorganic ion transport and metabolism];
65-138 1.48e-12

Cation-transporting P-type ATPase [Inorganic ion transport and metabolism];


Pssm-ID: 441819 [Multi-domain]  Cd Length: 717  Bit Score: 65.93  E-value: 1.48e-12
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 347453646  65 TTATFIIDGMHCKSCVSNIESTLSTLQYVSSVVVSLENRSAIVTFNASSVTPEMLRKAIEAVSpgqYRVSIASE 138
Cdd:COG2217    1 ERVRLRIEGMTCAACAWLIEKALRKLPGVLSARVNLATERARVEYDPGKVSLEELIAAVEKAG---YEAEPADA 71
TIGR00003 TIGR00003
copper ion binding protein; This model describes an apparently copper-specific subfamily of ...
 68-124 5.50e-07

copper ion binding protein; This model describes an apparently copper-specific subfamily of the metal-binding domain HMA (pfam00403). Closely related sequences outside this model include mercury resistance proteins and repeated domains of eukaryotic eukaryotic copper transport proteins. Members of this family are strictly prokaryotic. The model identifies both small proteins consisting of just this domain and N-terminal regions of cation (probably copper) transporting ATPases. [Transport and binding proteins, Cations and iron carrying compounds]


Pssm-ID: 188014 [Multi-domain]  Cd Length: 66  Bit Score: 45.61  E-value: 5.50e-07
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*..
gi 347453646   68 TFIIDGMHCKSCVSNIESTLSTLQYVSSVVVSLENRSAIVTFNASSVTPEMLRKAIE 124
Cdd:TIGR00003   3 TFQVKGMSCNHCVDKIEKFVGEIEGVSKVKVQLEKEKVVVEFDAPNVSATEICEAIL 59
PRK13748 PRK13748
putative mercuric reductase; Provisional
 166-224 9.86e-07

putative mercuric reductase; Provisional


Pssm-ID: 184298 [Multi-domain]  Cd Length: 561  Bit Score: 48.61  E-value: 9.86e-07
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|....*....
gi 347453646 166 ETVINIDGMTCHSCVQSIEGVISKKAGVKSIRVSLANSNGTVEYDPlLTSPETLREAIE 224
Cdd:PRK13748   1 MTTLKITGMTCDSCAAHVKDALEKVPGVQSADVSYPKGSAQLAIEV-GTSPDALTAAVA 58
TIGR00003 TIGR00003
copper ion binding protein; This model describes an apparently copper-specific subfamily of ...
 169-225 5.49e-06

copper ion binding protein; This model describes an apparently copper-specific subfamily of the metal-binding domain HMA (pfam00403). Closely related sequences outside this model include mercury resistance proteins and repeated domains of eukaryotic eukaryotic copper transport proteins. Members of this family are strictly prokaryotic. The model identifies both small proteins consisting of just this domain and N-terminal regions of cation (probably copper) transporting ATPases. [Transport and binding proteins, Cations and iron carrying compounds]


Pssm-ID: 188014 [Multi-domain]  Cd Length: 66  Bit Score: 42.91  E-value: 5.49e-06
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*..
gi 347453646  169 INIDGMTCHSCVQSIEGVISKKAGVKSIRVSLANSNGTVEYDPLLTSPETLREAIED 225
Cdd:TIGR00003   4 FQVKGMSCNHCVDKIEKFVGEIEGVSKVKVQLEKEKVVVEFDAPNVSATEICEAILD 60
PRK13748 PRK13748
putative mercuric reductase; Provisional
 68-138 5.94e-06

putative mercuric reductase; Provisional


Pssm-ID: 184298 [Multi-domain]  Cd Length: 561  Bit Score: 46.30  E-value: 5.94e-06
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 347453646  68 TFIIDGMHCKSCVSNIESTLSTLQYVSSVVVSLENRSAIVTFNAsSVTPEMLRKAIEAVSpgqYRVSIASE 138
Cdd:PRK13748   3 TLKITGMTCDSCAAHVKDALEKVPGVQSADVSYPKGSAQLAIEV-GTSPDALTAAVAGLG---YRATLADA 69
copA PRK10671
copper-exporting P-type ATPase CopA;
9-131 8.88e-06

copper-exporting P-type ATPase CopA;


Pssm-ID: 182635 [Multi-domain]  Cd Length: 834  Bit Score: 45.89  E-value: 8.88e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 347453646   9 TVEEIKKQIEAMGFPAYI---KKQPkyLKLGAIDVERLKNTPVKSPEGSQQRSPSYTndttatFIIDGMHCKSCVSNIES 85
Cdd:PRK10671  48 SAEALIETIKQAGYDASVshpKAKP--LTESSIPSEALTAASEELPAATADDDDSQQ------LLLSGMSCASCVSRVQN 119

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|....*.
gi 347453646  86 TLSTLQYVSSVVVSLENRSAIVTFNASsvtPEMLrkaIEAVSPGQY 131
Cdd:PRK10671 120 ALQSVPGVTQARVNLAERTALVMGSAS---PQDL---VQAVEKAGY 159
copA PRK10671
copper-exporting P-type ATPase CopA;
65-224 4.61e-05

copper-exporting P-type ATPase CopA;


Pssm-ID: 182635 [Multi-domain]  Cd Length: 834  Bit Score: 43.96  E-value: 4.61e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 347453646  65 TTATFIIDGMHCKSCVSNIESTLSTLQYVSSVVVSLENrsAIVTFNASSVTpemlrkAIEAVSPGQYRVSIAS------E 138
Cdd:PRK10671   3 QTIDLTLDGLSCGHCVKRVKESLEQRPDVEQADVSITE--AHVTGTASAEA------LIETIKQAGYDASVSHpkakplT 74

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 347453646 139 VESTSKSPSSSSLQKIPLKTVSQPLTQETVIniDGMTCHSCVQSIEGVISKKAGVKSIRVSLANSNGTVEYDPlltSPET 218
Cdd:PRK10671  75 ESSIPSEALTAASEELPAATADDDDSQQLLL--SGMSCASCVSRVQNALQSVPGVTQARVNLAERTALVMGSA---SPQD 149


                 ....*.
gi 347453646 219 LREAIE 224
Cdd:PRK10671 150 LVQAVE 155
MerP TIGR02052
mercuric transport protein periplasmic component; This model represents the periplasmic ...
 58-124 6.53e-05

mercuric transport protein periplasmic component; This model represents the periplasmic mercury (II) binding protein of the bacterial mercury detoxification system which passes mercuric ion to the MerT transporter for subsequent reduction to Hg(0) by the mercuric reductase MerA. MerP contains a distinctive GMTCXXC motif associated with metal binding. MerP is related to a larger family of metal binding proteins (pfam00403). [Cellular processes, Detoxification]


Pssm-ID: 131107 [Multi-domain]  Cd Length: 92  Bit Score: 40.40  E-value: 6.53e-05
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 347453646   58 SPSYTNDTTATFIIDGMHCKSCVSNIESTLSTLQYVSSVVVSLENRSAIVTFNASSVTPEMLRKAIE 124
Cdd:TIGR02052  16 LPAWAATQTVTLEVPGMTCVACPITVETALQKVDGVSKAEVTFKTKLAVVTFDDEKTNVKALTEATT 82
UxxU_metal_bind NF041115
metal-binding (seleno)protein; Known members of this family are selenoproteins with an ...
 163-224 2.20e-03

metal-binding (seleno)protein; Known members of this family are selenoproteins with an exceptional UXXU motif, with two selenocysteines. Known members so far derive primarily from MAGs, and have an N-terminal signal peptide N-terminal to the region represented in the seed alignment. Note that this model represents a specific clade of a more widely distributed domain that frequently appears 3 or 4 times in a single protein, so the domain-specific cutoff is critical to identification. Homologous domains, outside the scope of this model, are found in CopZ family copper chaperones and heavy metal-translocating P-type ATPases.


Pssm-ID: 469038 [Multi-domain]  Cd Length: 74  Bit Score: 35.77  E-value: 2.20e-03
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 347453646 163 LTQETVINIDGMTCHSCVQSIEGVISKKAGVKSIRVSLANSNGTVEYDPLLTSPETLREAIE 224
Cdd:NF041115   2 LAETVILAIEGMTUASUPLIAKKALEGLEGVEKADVSYKEGRAEVAFDPDKVSAAQMVDAVN 63
zntA PRK11033
zinc/cadmium/mercury/lead-transporting ATPase; Provisional
 171-225 3.95e-03

zinc/cadmium/mercury/lead-transporting ATPase; Provisional


Pssm-ID: 236827 [Multi-domain]  Cd Length: 741  Bit Score: 38.05  E-value: 3.95e-03
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|....*
gi 347453646 171 IDGMTCHSCVQSIEGVISKKAGVKSIRVSLANSNGTVEYDPlltspeTLREAIED 225
Cdd:PRK11033  59 VSGMDCPSCARKVENAVRQLAGVNQVQVLFATEKLVVDADN------DIRAQVES 107
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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