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Conserved domains on  [gi|346976947|gb|EGY20399|]
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WD repeat domain phosphoinositide-interacting protein [Verticillium dahliae VdLs.17]

Protein Classification

WD40 repeat domain-containing protein( domain architecture ID 1000017)

WD40 repeat domain-containing protein folds into a beta-propeller structure and functions as a scaffold, providing a platform for the interaction and assembly of several proteins into a signalosome; similar to a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly

CATH:  2.130.10.10
Gene Ontology:  GO:0005515
PubMed:  10322433|8090199|30069656|29026209
SCOP:  4002744

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
WD40 super family cl29593
WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions ...
 3-196 8.38e-08

WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment.


The actual alignment was detected with superfamily member cd00200:

Pssm-ID: 475233 [Multi-domain]  Cd Length: 289  Bit Score: 53.11  E-value: 8.38e-08
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 346976947   3 TPTLNFITFNQDHSCLAVAVRLNRKRLAVV---LESEIYLYDISNMSLLYTIPTSPNP-NAICaLSPSSENCYIAyplpk 78
Cdd:cd00200  122 VETGKCLTTLRGHTDWVNSVAFSPDGTFVAsssQDGTIKLWDLRTGKCVATLTGHTGEvNSVA-FSPDGEKLLSS----- 195

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 346976947  79 prdeSGDrrpahapplsnyvaptsGEVLVFDTVALKAVNVIEAHRSPLCCISLNAEGTLLATASETGTiIRVFSIPKGQK 158
Cdd:cd00200  196 ----SSD-----------------GTIKLWDLSTGKCLGTLRGHENGVNSVAFSPDGYLLASGSEDGT-IRVWDLRTGEC 253

                        170       180       190
                 ....*....|....*....|....*....|....*...
gi 346976947 159 LYQFRRGTypSTIYSMSFNLSSTLLCVSSTSDTVHIFR 196
Cdd:cd00200  254 VQTLSGHT--NSVTSLAWSPDGKRLASGSADGTIRIWD 289
 
Name Accession Description Interval E-value
WD40 cd00200
WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions ...
 3-196 8.38e-08

WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment.


Pssm-ID: 238121 [Multi-domain]  Cd Length: 289  Bit Score: 53.11  E-value: 8.38e-08
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 346976947   3 TPTLNFITFNQDHSCLAVAVRLNRKRLAVV---LESEIYLYDISNMSLLYTIPTSPNP-NAICaLSPSSENCYIAyplpk 78
Cdd:cd00200  122 VETGKCLTTLRGHTDWVNSVAFSPDGTFVAsssQDGTIKLWDLRTGKCVATLTGHTGEvNSVA-FSPDGEKLLSS----- 195

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 346976947  79 prdeSGDrrpahapplsnyvaptsGEVLVFDTVALKAVNVIEAHRSPLCCISLNAEGTLLATASETGTiIRVFSIPKGQK 158
Cdd:cd00200  196 ----SSD-----------------GTIKLWDLSTGKCLGTLRGHENGVNSVAFSPDGYLLASGSEDGT-IRVWDLRTGEC 253

                        170       180       190
                 ....*....|....*....|....*....|....*...
gi 346976947 159 LYQFRRGTypSTIYSMSFNLSSTLLCVSSTSDTVHIFR 196
Cdd:cd00200  254 VQTLSGHT--NSVTSLAWSPDGKRLASGSADGTIRIWD 289
WD40 COG2319
WD40 repeat [General function prediction only];
19-197 7.37e-07

WD40 repeat [General function prediction only];


Pssm-ID: 441893 [Multi-domain]  Cd Length: 403  Bit Score: 50.68  E-value: 7.37e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 346976947  19 AVAVRLNRKRLAVVLE-SEIYLYDISNMSLLYTIPTSPNPNAICALSPSSEncYIAyplpkprdeSGDRrpahapplsny 97
Cdd:COG2319  125 SVAFSPDGKTLASGSAdGTVRLWDLATGKLLRTLTGHSGAVTSVAFSPDGK--LLA---------SGSD----------- 182

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 346976947  98 vaptSGEVLVFDTVALKAVNVIEAHRSPLCCISLNAEGTLLATASETGTiIRVFSIPKGQKLYQFRRGTypSTIYSMSFN 177
Cdd:COG2319  183 ----DGTVRLWDLATGKLLRTLTGHTGAVRSVAFSPDGKLLASGSADGT-VRLWDLATGKLLRTLTGHS--GSVRSVAFS 255

                        170       180
                 ....*....|....*....|
gi 346976947 178 LSSTLLCVSSTSDTVHIFRL 197
Cdd:COG2319  256 PDGRLLASGSADGTVRLWDL 275
WD40 smart00320
WD40 repeats; Note that these repeats are permuted with respect to the structural repeats ...
 114-152 5.00e-03

WD40 repeats; Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.


Pssm-ID: 197651 [Multi-domain]  Cd Length: 40  Bit Score: 34.60  E-value: 5.00e-03
                           10        20        30
                   ....*....|....*....|....*....|....*....
gi 346976947   114 KAVNVIEAHRSPLCCISLNAEGTLLATASETGTiIRVFS 152
Cdd:smart00320   3 ELLKTLKGHTGPVTSVAFSPDGKYLASGSDDGT-IKLWD 40
 
Name Accession Description Interval E-value
WD40 cd00200
WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions ...
 3-196 8.38e-08

WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment.


Pssm-ID: 238121 [Multi-domain]  Cd Length: 289  Bit Score: 53.11  E-value: 8.38e-08
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 346976947   3 TPTLNFITFNQDHSCLAVAVRLNRKRLAVV---LESEIYLYDISNMSLLYTIPTSPNP-NAICaLSPSSENCYIAyplpk 78
Cdd:cd00200  122 VETGKCLTTLRGHTDWVNSVAFSPDGTFVAsssQDGTIKLWDLRTGKCVATLTGHTGEvNSVA-FSPDGEKLLSS----- 195

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 346976947  79 prdeSGDrrpahapplsnyvaptsGEVLVFDTVALKAVNVIEAHRSPLCCISLNAEGTLLATASETGTiIRVFSIPKGQK 158
Cdd:cd00200  196 ----SSD-----------------GTIKLWDLSTGKCLGTLRGHENGVNSVAFSPDGYLLASGSEDGT-IRVWDLRTGEC 253

                        170       180       190
                 ....*....|....*....|....*....|....*...
gi 346976947 159 LYQFRRGTypSTIYSMSFNLSSTLLCVSSTSDTVHIFR 196
Cdd:cd00200  254 VQTLSGHT--NSVTSLAWSPDGKRLASGSADGTIRIWD 289
WD40 cd00200
WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions ...
 103-197 2.06e-07

WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment.


Pssm-ID: 238121 [Multi-domain]  Cd Length: 289  Bit Score: 51.95  E-value: 2.06e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 346976947 103 GEVLVFDTVALKAVNVIEAHRSPLCCISLNAEGTLLATASETGTiIRVFSIPKGQKLYQFRRGTYPstIYSMSFNLSSTL 182
Cdd:cd00200  157 GTIKLWDLRTGKCVATLTGHTGEVNSVAFSPDGEKLLSSSSDGT-IKLWDLSTGKCLGTLRGHENG--VNSVAFSPDGYL 233

                         90
                 ....*....|....*
gi 346976947 183 LCVSSTSDTVHIFRL 197
Cdd:cd00200  234 LASGSEDGTIRVWDL 248
WD40 cd00200
WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions ...
 95-197 2.99e-07

WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment.


Pssm-ID: 238121 [Multi-domain]  Cd Length: 289  Bit Score: 51.57  E-value: 2.99e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 346976947  95 SNYVApTSGE---VLVFDTVALKAVNVIEAHRSPLCCISLNAEGTLLATASETGTiIRVFSIPKGQKLYQFRrgTYPSTI 171
Cdd:cd00200   63 GTYLA-SGSSdktIRLWDLETGECVRTLTGHTSYVSSVAFSPDGRILSSSSRDKT-IKVWDVETGKCLTTLR--GHTDWV 138

                         90       100
                 ....*....|....*....|....*.
gi 346976947 172 YSMSFNLSSTLLCVSSTSDTVHIFRL 197
Cdd:cd00200  139 NSVAFSPDGTFVASSSQDGTIKLWDL 164
WD40 COG2319
WD40 repeat [General function prediction only];
19-197 7.37e-07

WD40 repeat [General function prediction only];


Pssm-ID: 441893 [Multi-domain]  Cd Length: 403  Bit Score: 50.68  E-value: 7.37e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 346976947  19 AVAVRLNRKRLAVVLE-SEIYLYDISNMSLLYTIPTSPNPNAICALSPSSEncYIAyplpkprdeSGDRrpahapplsny 97
Cdd:COG2319  125 SVAFSPDGKTLASGSAdGTVRLWDLATGKLLRTLTGHSGAVTSVAFSPDGK--LLA---------SGSD----------- 182

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 346976947  98 vaptSGEVLVFDTVALKAVNVIEAHRSPLCCISLNAEGTLLATASETGTiIRVFSIPKGQKLYQFRRGTypSTIYSMSFN 177
Cdd:COG2319  183 ----DGTVRLWDLATGKLLRTLTGHTGAVRSVAFSPDGKLLASGSADGT-VRLWDLATGKLLRTLTGHS--GSVRSVAFS 255

                        170       180
                 ....*....|....*....|
gi 346976947 178 LSSTLLCVSSTSDTVHIFRL 197
Cdd:COG2319  256 PDGRLLASGSADGTVRLWDL 275
WD40 COG2319
WD40 repeat [General function prediction only];
19-198 5.03e-06

WD40 repeat [General function prediction only];


Pssm-ID: 441893 [Multi-domain]  Cd Length: 403  Bit Score: 48.37  E-value: 5.03e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 346976947  19 AVAVRLNRKRLAVVLE-SEIYLYDISNMSLLYTIPTSPNPnaICALSPSSENCYIAyplpkprdeSGDRrpahapplsny 97
Cdd:COG2319  167 SVAFSPDGKLLASGSDdGTVRLWDLATGKLLRTLTGHTGA--VRSVAFSPDGKLLA---------SGSA----------- 224

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 346976947  98 vaptSGEVLVFDTVALKAVNVIEAHRSPLCCISLNAEGTLLATASETGTIiRVFSIPKGQKLYQFRRGTypSTIYSMSFN 177
Cdd:COG2319  225 ----DGTVRLWDLATGKLLRTLTGHSGSVRSVAFSPDGRLLASGSADGTV-RLWDLATGELLRTLTGHS--GGVNSVAFS 297

                        170       180
                 ....*....|....*....|.
gi 346976947 178 LSSTLLCVSSTSDTVHIFRLG 198
Cdd:COG2319  298 PDGKLLASGSDDGTVRLWDLA 318
WD40 cd00200
WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions ...
 103-197 3.44e-05

WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment.


Pssm-ID: 238121 [Multi-domain]  Cd Length: 289  Bit Score: 45.02  E-value: 3.44e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 346976947 103 GEVLVFDTVALKAVNVIEAHRSPLCCISLNAEGTLLATASETGTIiRVFSIPKGQKLYQFRrgTYPSTIYSMSFNLSSTL 182
Cdd:cd00200  115 KTIKVWDVETGKCLTTLRGHTDWVNSVAFSPDGTFVASSSQDGTI-KLWDLRTGKCVATLT--GHTGEVNSVAFSPDGEK 191

                         90
                 ....*....|....*
gi 346976947 183 LCVSSTSDTVHIFRL 197
Cdd:cd00200  192 LLSSSSDGTIKLWDL 206
WD40 COG2319
WD40 repeat [General function prediction only];
75-197 6.44e-05

WD40 repeat [General function prediction only];


Pssm-ID: 441893 [Multi-domain]  Cd Length: 403  Bit Score: 44.90  E-value: 6.44e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 346976947  75 PLPKPRDESGDRRPAHAPPLSNYVAPTS--GEVLVFDTVALKAVNVIEAHRSPLCCISLNAEGTLLATASETGTiIRVFS 152
Cdd:COG2319   70 LLATLLGHTAAVLSVAFSPDGRLLASASadGTVRLWDLATGLLLRTLTGHTGAVRSVAFSPDGKTLASGSADGT-VRLWD 148

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|....*.
gi 346976947 153 IPKGQKLYQFRRGTypSTIYSMSFNLSSTLLcVSSTSD-TVHIFRL 197
Cdd:COG2319  149 LATGKLLRTLTGHS--GAVTSVAFSPDGKLL-ASGSDDgTVRLWDL 191
WD40 cd00200
WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions ...
 93-195 1.89e-04

WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment.


Pssm-ID: 238121 [Multi-domain]  Cd Length: 289  Bit Score: 43.09  E-value: 1.89e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 346976947  93 PLSNYVAPTS--GEVLVFDTVALKAVNVIEAHRSPLCCISLNAEGTLLATASETGTiIRVFSIPKGQKLYQFRrgTYPST 170
Cdd:cd00200   19 PDGKLLATGSgdGTIKVWDLETGELLRTLKGHTGPVRDVAASADGTYLASGSSDKT-IRLWDLETGECVRTLT--GHTSY 95

                         90       100
                 ....*....|....*....|....*
gi 346976947 171 IYSMSFNLSSTLLCVSSTSDTVHIF 195
Cdd:cd00200   96 VSSVAFSPDGRILSSSSRDKTIKVW 120
WD40 cd00200
WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions ...
 116-197 2.92e-03

WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment.


Pssm-ID: 238121 [Multi-domain]  Cd Length: 289  Bit Score: 39.24  E-value: 2.92e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 346976947 116 VNVIEAHRSPLCCISLNAEGTLLATASETGTiIRVFSIPKGQKLYQFRrgTYPSTIYSMSFNLSSTLLCVSSTSDTVHIF 195
Cdd:cd00200    2 RRTLKGHTGGVTCVAFSPDGKLLATGSGDGT-IKVWDLETGELLRTLK--GHTGPVRDVAASADGTYLASGSSDKTIRLW 78


                 ..
gi 346976947 196 RL 197
Cdd:cd00200   79 DL 80
WD40 smart00320
WD40 repeats; Note that these repeats are permuted with respect to the structural repeats ...
 114-152 5.00e-03

WD40 repeats; Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.


Pssm-ID: 197651 [Multi-domain]  Cd Length: 40  Bit Score: 34.60  E-value: 5.00e-03
                           10        20        30
                   ....*....|....*....|....*....|....*....
gi 346976947   114 KAVNVIEAHRSPLCCISLNAEGTLLATASETGTiIRVFS 152
Cdd:smart00320   3 ELLKTLKGHTGPVTSVAFSPDGKYLASGSDDGT-IKLWD 40
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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