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Conserved domains on  [gi|345493108|ref|XP_003427005|]
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putative protein FAM10A4 isoform X2 [Nasonia vitripennis]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
NlpI COG4785
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];
130-214 2.55e-17

Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];


:

Pssm-ID: 443815 [Multi-domain]  Cd Length: 223  Bit Score: 79.96  E-value: 2.55e-17
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 345493108 130 KDYEKAIKLYTEAIELNPQASLLYAKRGQVYLLLNKPNACIRDCNRALELNPDSAAAHKFRGRANQLLGKFEEATNDLRK 209
Cdd:COG4785   87 GDYDLAIADFDQALELDPDLAEAYNNRGLAYLLLGDYDAALEDFDRALELDPDYAYAYLNRGIALYYLGRYELAIADLEK 166


                 ....*
gi 345493108 210 ACKFD 214
Cdd:COG4785  167 ALELD 171
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
130-318 4.31e-17

Tetratricopeptide (TPR) repeat [General function prediction only];


:

Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 79.67  E-value: 4.31e-17
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 345493108 130 KDYEKAIKLYTEAIELNPQASLLYAKRGQVYLLLNKPNACIRDCNRALELNPDSAAAHKFRGRANQLLGKFEEATNDLRK 209
Cdd:COG0457   56 GRYEEALADYEQALELDPDDAEALNNLGLALQALGRYEEALEDYDKALELDPDDAEALYNLGLALLELGRYDEAIEAYER 135

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 345493108 210 ACKFDFD-EQADEWLREVTPNARKIEEHKRKRERKQMERQEREKLERLRKIREAQAKAREQQQQQQASSPADGEAPGAGV 288
Cdd:COG0457  136 ALELDPDdADALYNLGIALEKLGRYEEALELLEKLEAAALAALLAAALGEAALALAAAEVLLALLLALEQALRKKLAILT 215

                        170       180       190
                 ....*....|....*....|....*....|
gi 345493108 289 GGPGGMPQFAQFLNDPEVLQAFQDPEVAEA 318
Cdd:COG0457  216 LAALAELLLLALALLLALRLAALALYQYRA 245
Hip_N cd14438
N-terminal dimerization domain of the Hsp70-interacting protein (Hip) and similar proteins; ...
 7-47 5.97e-13

N-terminal dimerization domain of the Hsp70-interacting protein (Hip) and similar proteins; The Hsc70/Hsp70-interacting protein (Hip, also p48 or suppressor of tumorigenicity ST13) functions as a regulator of the cyclic action of Hsp70. Hip forms homodimers, and this model characterizes the N-terminal dimerization domain, which may not be directly involved in its regulatory function. A central domain of Hip that contains TPR repeats binds the ATPase domain of Hsp70 and slows the release of ADP.


:

Pssm-ID: 271228  Cd Length: 41  Bit Score: 62.57  E-value: 5.97e-13
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|.
gi 345493108   7 SELLTQFKVFIELCNKQPSIINHPDLAFFKNFVERLGGKVP 47
Cdd:cd14438    1 PEKLKELKAFVELCKQNPSILHTPELSFFKEYLESLGAKIP 41
STI1 super family cl17974
STI1 domain; This entry corresponds to the STI1 domain that is found in two copies in the Sti1 ...
 295-351 3.64e-07

STI1 domain; This entry corresponds to the STI1 domain that is found in two copies in the Sti1 protein.


The actual alignment was detected with superfamily member pfam17830:

Pssm-ID: 450205  Cd Length: 55  Bit Score: 46.40  E-value: 3.64e-07
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*..
gi 345493108  295 PQFAQFLNDPEVLQAFQDPEVAEAFKDISANPSNIFKYQSNPKVMAlinsVFSKNMG 351
Cdd:pfam17830   3 ELLAKLAANPETRALLSDPEFVAKLQQIQKNPSSLQQYMQDPRVMT----KLGVLMG 55
 
Name Accession Description Interval E-value
NlpI COG4785
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];
130-214 2.55e-17

Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 443815 [Multi-domain]  Cd Length: 223  Bit Score: 79.96  E-value: 2.55e-17
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 345493108 130 KDYEKAIKLYTEAIELNPQASLLYAKRGQVYLLLNKPNACIRDCNRALELNPDSAAAHKFRGRANQLLGKFEEATNDLRK 209
Cdd:COG4785   87 GDYDLAIADFDQALELDPDLAEAYNNRGLAYLLLGDYDAALEDFDRALELDPDYAYAYLNRGIALYYLGRYELAIADLEK 166


                 ....*
gi 345493108 210 ACKFD 214
Cdd:COG4785  167 ALELD 171
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
130-318 4.31e-17

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 79.67  E-value: 4.31e-17
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 345493108 130 KDYEKAIKLYTEAIELNPQASLLYAKRGQVYLLLNKPNACIRDCNRALELNPDSAAAHKFRGRANQLLGKFEEATNDLRK 209
Cdd:COG0457   56 GRYEEALADYEQALELDPDDAEALNNLGLALQALGRYEEALEDYDKALELDPDDAEALYNLGLALLELGRYDEAIEAYER 135

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 345493108 210 ACKFDFD-EQADEWLREVTPNARKIEEHKRKRERKQMERQEREKLERLRKIREAQAKAREQQQQQQASSPADGEAPGAGV 288
Cdd:COG0457  136 ALELDPDdADALYNLGIALEKLGRYEEALELLEKLEAAALAALLAAALGEAALALAAAEVLLALLLALEQALRKKLAILT 215

                        170       180       190
                 ....*....|....*....|....*....|
gi 345493108 289 GGPGGMPQFAQFLNDPEVLQAFQDPEVAEA 318
Cdd:COG0457  216 LAALAELLLLALALLLALRLAALALYQYRA 245
PLN03088 PLN03088
SGT1, suppressor of G2 allele of SKP1; Provisional
 121-217 8.52e-14

SGT1, suppressor of G2 allele of SKP1; Provisional


Pssm-ID: 215568 [Multi-domain]  Cd Length: 356  Bit Score: 71.36  E-value: 8.52e-14
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 345493108 121 SQAVSAFVEKDYEKAIKLYTEAIELNPQASLLYAKRGQVYLLLNKPNACIRDCNRALELNPDSAAAHKFRGRANQLLGKF 200
Cdd:PLN03088   7 DKAKEAFVDDDFALAVDLYTQAIDLDPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMKLEEY 86

                         90
                 ....*....|....*..
gi 345493108 201 EEATNDLRKACKFDFDE 217
Cdd:PLN03088  87 QTAKAALEKGASLAPGD 103
Hip_N cd14438
N-terminal dimerization domain of the Hsp70-interacting protein (Hip) and similar proteins; ...
 7-47 5.97e-13

N-terminal dimerization domain of the Hsp70-interacting protein (Hip) and similar proteins; The Hsc70/Hsp70-interacting protein (Hip, also p48 or suppressor of tumorigenicity ST13) functions as a regulator of the cyclic action of Hsp70. Hip forms homodimers, and this model characterizes the N-terminal dimerization domain, which may not be directly involved in its regulatory function. A central domain of Hip that contains TPR repeats binds the ATPase domain of Hsp70 and slows the release of ADP.


Pssm-ID: 271228  Cd Length: 41  Bit Score: 62.57  E-value: 5.97e-13
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|.
gi 345493108   7 SELLTQFKVFIELCNKQPSIINHPDLAFFKNFVERLGGKVP 47
Cdd:cd14438    1 PEKLKELKAFVELCKQNPSILHTPELSFFKEYLESLGAKIP 41
3a0801s09 TIGR00990
mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) ...
 88-244 2.06e-10

mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70); [Transport and binding proteins, Amino acids, peptides and amines]


Pssm-ID: 273380 [Multi-domain]  Cd Length: 615  Bit Score: 61.92  E-value: 2.06e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 345493108   88 TGVIEPDNDPPQPMGDSDLQPTEEQIEESHEK-RSQAVSAFVEKDYEKAIKLYTEAIELNPQAsLLYAKRGQVYLLLNKP 166
Cdd:TIGR00990  98 NAPVEPADELPEIDESSVANLSEEERKKYAAKlKEKGNKAYRNKDFNKAIKLYSKAIECKPDP-VYYSNRAACHNALGDW 176

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 345493108  167 NACIRDCNRALELNPDSAAAHKFRGRANQLLGKFEEATNDLRKACKFD-FDEQADEWLREVTPNARKIEEHKRKRERKQ 244
Cdd:TIGR00990 177 EKVVEDTTAALELDPDYSKALNRRANAYDGLGKYADALLDLTASCIIDgFRNEQSAQAVERLLKKFAESKAKEILETKP 255
HipN pfam18253
Hsp70-interacting protein N N-terminal domain; This is the N-terminal domain, known as HipN, ...
 14-47 1.49e-09

Hsp70-interacting protein N N-terminal domain; This is the N-terminal domain, known as HipN, found in Hsp70-interacting protein (Hip) present in Rattus norvegicus. Hip cooperates with the chaperone Hsp70 in protein folding and prevention of aggregation and may delay substrate release by slowing ADP dissociation from Hsp70. HipN is responsible for N-terminal homo-dimerization which is necessary so that the Hip dimer can interact with Hsp70 molecules.


Pssm-ID: 408069  Cd Length: 42  Bit Score: 53.05  E-value: 1.49e-09
                          10        20        30
                  ....*....|....*....|....*....|....
gi 345493108   14 KVFIELCNKQPSIINHPDLAFFKNFVERLGGKVP 47
Cdd:pfam18253   9 KQFVDLCKANPSILHLPELAFFKEFLESLGATVP 42
STI1 pfam17830
STI1 domain; This entry corresponds to the STI1 domain that is found in two copies in the Sti1 ...
 295-351 3.64e-07

STI1 domain; This entry corresponds to the STI1 domain that is found in two copies in the Sti1 protein.


Pssm-ID: 436075  Cd Length: 55  Bit Score: 46.40  E-value: 3.64e-07
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*..
gi 345493108  295 PQFAQFLNDPEVLQAFQDPEVAEAFKDISANPSNIFKYQSNPKVMAlinsVFSKNMG 351
Cdd:pfam17830   3 ELLAKLAANPETRALLSDPEFVAKLQQIQKNPSSLQQYMQDPRVMT----KLGVLMG 55
STI1 smart00727
Heat shock chaperonin-binding motif;
303-342 1.23e-06

Heat shock chaperonin-binding motif;


Pssm-ID: 128966  Cd Length: 41  Bit Score: 44.57  E-value: 1.23e-06
                           10        20        30        40
                   ....*....|....*....|....*....|....*....|.
gi 345493108   303 DPEVLQAFQDPEVAEAFKDISANPSNIFKY-QSNPKVMALI 342
Cdd:smart00727   1 DPEMALRLQNPQVQSLLQDMQQNPDMLAQMlQENPQLLQLI 41
TPR_11 pfam13414
TPR repeat;
126-163 5.55e-05

TPR repeat;


Pssm-ID: 315977 [Multi-domain]  Cd Length: 42  Bit Score: 39.76  E-value: 5.55e-05
                          10        20        30
                  ....*....|....*....|....*....|....*....
gi 345493108  126 AFVEK-DYEKAIKLYTEAIELNPQASLLYAKRGQVYLLL 163
Cdd:pfam13414   3 AYYEQgKYEEAIEAYKKALKLDPDNPEAYYNLGLAYYKL 41
ACL4-like cd24142
Assembly chaperone of ribosomal protein L4 and similar proteins; Assembly chaperone of RPL4 ...
 121-189 9.09e-05

Assembly chaperone of ribosomal protein L4 and similar proteins; Assembly chaperone of RPL4 (ACL4) acts as a chaperone for the L4 ribosomal subunit, encoded by RPL4A and RPL4B, and is required for hierarchical ribosome assembly. It is required for the soluble expression of newly synthesized RPL4 and for the protection of RPL4 from the Tom1-dependent cellular degradation machinery. ACL4 shields ribosomal protein L4 until timely release and insertion into the pre-ribosome is possible, once ribosomal protein L18 is present.


Pssm-ID: 467942 [Multi-domain]  Cd Length: 306  Bit Score: 43.77  E-value: 9.09e-05
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 345493108 121 SQAVSAFVEKDYEKAIKLYTEAIELNPQASLLYAKRGQVYLLLNKPNACIRDCNRALELNPDSAAAhKF 189
Cdd:cd24142    5 EKAEELLDQGNFELALKFLQRALELEPNNVEALELLGEILLELGDVEEAREVLLRAIELDPDGGYE-KY 72
TPR smart00028
Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum ...
 153-182 1.07e-03

Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.


Pssm-ID: 197478 [Multi-domain]  Cd Length: 34  Bit Score: 36.27  E-value: 1.07e-03
                           10        20        30
                   ....*....|....*....|....*....|
gi 345493108   153 YAKRGQVYLLLNKPNACIRDCNRALELNPD 182
Cdd:smart00028   4 LYNLGNAYLKLGDYDEALEYYEKALELDPN 33
 
Name Accession Description Interval E-value
NlpI COG4785
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];
130-214 2.55e-17

Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 443815 [Multi-domain]  Cd Length: 223  Bit Score: 79.96  E-value: 2.55e-17
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 345493108 130 KDYEKAIKLYTEAIELNPQASLLYAKRGQVYLLLNKPNACIRDCNRALELNPDSAAAHKFRGRANQLLGKFEEATNDLRK 209
Cdd:COG4785   87 GDYDLAIADFDQALELDPDLAEAYNNRGLAYLLLGDYDAALEDFDRALELDPDYAYAYLNRGIALYYLGRYELAIADLEK 166


                 ....*
gi 345493108 210 ACKFD 214
Cdd:COG4785  167 ALELD 171
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
130-318 4.31e-17

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 79.67  E-value: 4.31e-17
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 345493108 130 KDYEKAIKLYTEAIELNPQASLLYAKRGQVYLLLNKPNACIRDCNRALELNPDSAAAHKFRGRANQLLGKFEEATNDLRK 209
Cdd:COG0457   56 GRYEEALADYEQALELDPDDAEALNNLGLALQALGRYEEALEDYDKALELDPDDAEALYNLGLALLELGRYDEAIEAYER 135

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 345493108 210 ACKFDFD-EQADEWLREVTPNARKIEEHKRKRERKQMERQEREKLERLRKIREAQAKAREQQQQQQASSPADGEAPGAGV 288
Cdd:COG0457  136 ALELDPDdADALYNLGIALEKLGRYEEALELLEKLEAAALAALLAAALGEAALALAAAEVLLALLLALEQALRKKLAILT 215

                        170       180       190
                 ....*....|....*....|....*....|
gi 345493108 289 GGPGGMPQFAQFLNDPEVLQAFQDPEVAEA 318
Cdd:COG0457  216 LAALAELLLLALALLLALRLAALALYQYRA 245
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
130-216 4.63e-16

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 76.58  E-value: 4.63e-16
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 345493108 130 KDYEKAIKLYTEAIELNPQASLLYAKRGQVYLLLNKPNACIRDCNRALELNPDSAAAHKFRGRANQLLGKFEEATNDLRK 209
Cdd:COG0457   22 GRYEEAIEDYEKALELDPDDAEALYNLGLAYLRLGRYEEALADYEQALELDPDDAEALNNLGLALQALGRYEEALEDYDK 101


                 ....*..
gi 345493108 210 ACKFDFD 216
Cdd:COG0457  102 ALELDPD 108
BepA COG4783
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ...
 122-224 1.04e-14

Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443813 [Multi-domain]  Cd Length: 139  Bit Score: 70.22  E-value: 1.04e-14
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 345493108 122 QAVSAFVEKDYEKAIKLYTEAIELNPQASLLYAKRGQVYLLLNKPNACIRDCNRALELNPDSAAAHKFRGRANQLLGKFE 201
Cdd:COG4783   10 LAQALLLAGDYDEAEALLEKALELDPDNPEAFALLGEILLQLGDLDEAIVLLHEALELDPDEPEARLNLGLALLKAGDYD 89

                         90       100
                 ....*....|....*....|...
gi 345493108 202 EATNDLRKACKFDfDEQADEWLR 224
Cdd:COG4783   90 EALALLEKALKLD-PEHPEAYLR 111
PLN03088 PLN03088
SGT1, suppressor of G2 allele of SKP1; Provisional
 121-217 8.52e-14

SGT1, suppressor of G2 allele of SKP1; Provisional


Pssm-ID: 215568 [Multi-domain]  Cd Length: 356  Bit Score: 71.36  E-value: 8.52e-14
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 345493108 121 SQAVSAFVEKDYEKAIKLYTEAIELNPQASLLYAKRGQVYLLLNKPNACIRDCNRALELNPDSAAAHKFRGRANQLLGKF 200
Cdd:PLN03088   7 DKAKEAFVDDDFALAVDLYTQAIDLDPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMKLEEY 86

                         90
                 ....*....|....*..
gi 345493108 201 EEATNDLRKACKFDFDE 217
Cdd:PLN03088  87 QTAKAALEKGASLAPGD 103
Spy COG3914
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ...
 123-214 4.61e-13

Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443119 [Multi-domain]  Cd Length: 658  Bit Score: 70.02  E-value: 4.61e-13
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 345493108 123 AVSAFVEKDYEKAIKLYTEAIELNPQASLLYAKRGQVYLLLNKPNACIRDCNRALELNPDSAAAHKFRGRANQLLGKFEE 202
Cdd:COG3914  119 GNLLLALGRLEEALAALRRALALNPDFAEAYLNLGEALRRLGRLEEAIAALRRALELDPDNAEALNNLGNALQDLGRLEE 198

                         90
                 ....*....|..
gi 345493108 203 ATNDLRKACKFD 214
Cdd:COG3914  199 AIAAYRRALELD 210
Spy COG3914
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ...
 101-214 5.37e-13

Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443119 [Multi-domain]  Cd Length: 658  Bit Score: 70.02  E-value: 5.37e-13
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 345493108 101 MGDSDLQPTEEQIEESHEKRSQAVSAFVE-KDYEKAIKLYTEAIELNPQASLLYAKRGQVYLLLNKPNACIRDCNRALEL 179
Cdd:COG3914   62 LAAGEAAAAAAALLLLAALLELAALLLQAlGRYEEALALYRRALALNPDNAEALFNLGNLLLALGRLEEALAALRRALAL 141

                         90       100       110
                 ....*....|....*....|....*....|....*
gi 345493108 180 NPDSAAAHKFRGRANQLLGKFEEATNDLRKACKFD 214
Cdd:COG3914  142 NPDFAEAYLNLGEALRRLGRLEEAIAALRRALELD 176
Hip_N cd14438
N-terminal dimerization domain of the Hsp70-interacting protein (Hip) and similar proteins; ...
 7-47 5.97e-13

N-terminal dimerization domain of the Hsp70-interacting protein (Hip) and similar proteins; The Hsc70/Hsp70-interacting protein (Hip, also p48 or suppressor of tumorigenicity ST13) functions as a regulator of the cyclic action of Hsp70. Hip forms homodimers, and this model characterizes the N-terminal dimerization domain, which may not be directly involved in its regulatory function. A central domain of Hip that contains TPR repeats binds the ATPase domain of Hsp70 and slows the release of ADP.


Pssm-ID: 271228  Cd Length: 41  Bit Score: 62.57  E-value: 5.97e-13
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|.
gi 345493108   7 SELLTQFKVFIELCNKQPSIINHPDLAFFKNFVERLGGKVP 47
Cdd:cd14438    1 PEKLKELKAFVELCKQNPSILHTPELSFFKEYLESLGAKIP 41
NrfG COG4235
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ...
 123-210 7.78e-13

Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443378 [Multi-domain]  Cd Length: 131  Bit Score: 64.64  E-value: 7.78e-13
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 345493108 123 AVSAFVEKDYEKAIKLYTEAIELNPQASLLYAKRGQVYLLLNKPNACIRDCNRALELNPDSAAAHKFRGRANQLLGKFEE 202
Cdd:COG4235   24 GRAYLRLGRYDEALAAYEKALRLDPDNADALLDLAEALLAAGDTEEAEELLERALALDPDNPEALYLLGLAAFQQGDYAE 103


                 ....*...
gi 345493108 203 ATNDLRKA 210
Cdd:COG4235  104 AIAAWQKL 111
BepA COG4783
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ...
 123-210 1.25e-12

Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443813 [Multi-domain]  Cd Length: 139  Bit Score: 64.44  E-value: 1.25e-12
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 345493108 123 AVSAFVEKDYEKAIKLYTEAIELNPQASLLYAKRGQVYLLLNKPNACIRDCNRALELNPDSAAAHKFRGRANQLLGKFEE 202
Cdd:COG4783   45 GEILLQLGDLDEAIVLLHEALELDPDEPEARLNLGLALLKAGDYDEALALLEKALKLDPEHPEAYLRLARAYRALGRPDE 124


                 ....*...
gi 345493108 203 ATNDLRKA 210
Cdd:COG4783  125 AIAALEKA 132
TadD COG5010
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ...
 130-210 2.49e-12

Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];


Pssm-ID: 444034 [Multi-domain]  Cd Length: 155  Bit Score: 64.21  E-value: 2.49e-12
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 345493108 130 KDYEKAIKLYTEAIELNPQASLLYAKRGQVYLLLNKPNACIRDCNRALELNPDSAAAHKFRGRANQLLGKFEEATNDLRK 209
Cdd:COG5010   68 GDFEESLALLEQALQLDPNNPELYYNLALLYSRSGDKDEAKEYYEKALALSPDNPNAYSNLAALLLSLGQDDEAKAALQR 147


                 .
gi 345493108 210 A 210
Cdd:COG5010  148 A 148
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
 114-248 8.63e-12

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 64.75  E-value: 8.63e-12
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 345493108 114 EESHEKRSQAVSAFVEKDYEKAIKLYTEAIELNPQASLLYAKRGQVYLLLNKPNACIRDCNRALELNPDSAAAHKFRGRA 193
Cdd:COG2956  142 ENAHAYCELAELYLEQGDYDEAIEALEKALKLDPDCARALLLLAELYLEQGDYEEAIAALERALEQDPDYLPALPRLAEL 221

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|....*
gi 345493108 194 NQLLGKFEEATNDLRKACKFDFDEQADEWLREVTPNARKIEEhKRKRERKQMERQ 248
Cdd:COG2956  222 YEKLGDPEEALELLRKALELDPSDDLLLALADLLERKEGLEA-ALALLERQLRRH 275
PilF COG3063
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
130-210 1.61e-11

Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];


Pssm-ID: 442297 [Multi-domain]  Cd Length: 94  Bit Score: 60.18  E-value: 1.61e-11
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 345493108 130 KDYEKAIKLYTEAIELNPQASLLYAKRGQVYLLLNKPNACIRdCNRALELNPDSAAAHKFRGRANQLLGKFEEATNDLRK 209
Cdd:COG3063    6 GDLEEAEEYYEKALELDPDNADALNNLGLLLLEQGRYDEAIA-LEKALKLDPNNAEALLNLAELLLELGDYDEALAYLER 84


                 .
gi 345493108 210 A 210
Cdd:COG3063   85 A 85
NlpI COG4785
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];
112-214 1.64e-11

Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 443815 [Multi-domain]  Cd Length: 223  Bit Score: 63.01  E-value: 1.64e-11
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 345493108 112 QIEESHEKRSQAVSAFVEKDYEKAIKLYTEAIeLNPQASLLYAKRGQVYLLLNKPNACIRDCNRALELNPDSAAAHKFRG 191
Cdd:COG4785   36 ALAIALADLALALAAAALAAAALAAERIDRAL-ALPDLAQLYYERGVAYDSLGDYDLAIADFDQALELDPDLAEAYNNRG 114

                         90       100
                 ....*....|....*....|...
gi 345493108 192 RANQLLGKFEEATNDLRKACKFD 214
Cdd:COG4785  115 LAYLLLGDYDAALEDFDRALELD 137
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
 129-214 5.15e-11

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 62.44  E-value: 5.15e-11
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 345493108 129 EKDYEKAIKLYTEAIELNPQASLLYAKRGQVYLLLNKPNACIRDCNRALELNPDSAAAHKFRGRANQLLGKFEEATNDLR 208
Cdd:COG2956  123 EGDWEKAIEVLERLLKLGPENAHAYCELAELYLEQGDYDEAIEALEKALKLDPDCARALLLLAELYLEQGDYEEAIAALE 202


                 ....*.
gi 345493108 209 KACKFD 214
Cdd:COG2956  203 RALEQD 208
3a0801s09 TIGR00990
mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) ...
 88-244 2.06e-10

mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70); [Transport and binding proteins, Amino acids, peptides and amines]


Pssm-ID: 273380 [Multi-domain]  Cd Length: 615  Bit Score: 61.92  E-value: 2.06e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 345493108   88 TGVIEPDNDPPQPMGDSDLQPTEEQIEESHEK-RSQAVSAFVEKDYEKAIKLYTEAIELNPQAsLLYAKRGQVYLLLNKP 166
Cdd:TIGR00990  98 NAPVEPADELPEIDESSVANLSEEERKKYAAKlKEKGNKAYRNKDFNKAIKLYSKAIECKPDP-VYYSNRAACHNALGDW 176

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 345493108  167 NACIRDCNRALELNPDSAAAHKFRGRANQLLGKFEEATNDLRKACKFD-FDEQADEWLREVTPNARKIEEHKRKRERKQ 244
Cdd:TIGR00990 177 EKVVEDTTAALELDPDYSKALNRRANAYDGLGKYADALLDLTASCIIDgFRNEQSAQAVERLLKKFAESKAKEILETKP 255
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
143-216 4.80e-10

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 59.25  E-value: 4.80e-10
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 345493108 143 IELNPQASLLYAKRGQVYLLLNKPNACIRDCNRALELNPDSAAAHKFRGRANQLLGKFEEATNDLRKACKFDFD 216
Cdd:COG0457    1 LELDPDDAEAYNNLGLAYRRLGRYEEAIEDYEKALELDPDDAEALYNLGLAYLRLGRYEEALADYEQALELDPD 74
HipN pfam18253
Hsp70-interacting protein N N-terminal domain; This is the N-terminal domain, known as HipN, ...
 14-47 1.49e-09

Hsp70-interacting protein N N-terminal domain; This is the N-terminal domain, known as HipN, found in Hsp70-interacting protein (Hip) present in Rattus norvegicus. Hip cooperates with the chaperone Hsp70 in protein folding and prevention of aggregation and may delay substrate release by slowing ADP dissociation from Hsp70. HipN is responsible for N-terminal homo-dimerization which is necessary so that the Hip dimer can interact with Hsp70 molecules.


Pssm-ID: 408069  Cd Length: 42  Bit Score: 53.05  E-value: 1.49e-09
                          10        20        30
                  ....*....|....*....|....*....|....
gi 345493108   14 KVFIELCNKQPSIINHPDLAFFKNFVERLGGKVP 47
Cdd:pfam18253   9 KQFVDLCKANPSILHLPELAFFKEFLESLGATVP 42
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
 111-214 4.02e-09

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 56.66  E-value: 4.02e-09
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 345493108 111 EQIEESHEKRSQAVSA-----FVEKDYEKAIKLYTEAIELNPQASLLYAKRGQVYLLLNKPNACIRDCNRALELNPDSAA 185
Cdd:COG2956   66 QKLLERDPDRAEALLElaqdyLKAGLLDRAEELLEKLLELDPDDAEALRLLAEIYEQEGDWEKAIEVLERLLKLGPENAH 145

                         90       100
                 ....*....|....*....|....*....
gi 345493108 186 AHKFRGRANQLLGKFEEATNDLRKACKFD 214
Cdd:COG2956  146 AYCELAELYLEQGDYDEAIEALEKALKLD 174
NlpI COG4785
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];
123-210 9.81e-09

Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 443815 [Multi-domain]  Cd Length: 223  Bit Score: 54.92  E-value: 9.81e-09
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 345493108 123 AVSAFVEKDYEKAIKLYTEAIELNPQASLLYAKRGQVYLLLNKPNACIRDCNRALELNPDSAAAH--------------- 187
Cdd:COG4785  114 GLAYLLLGDYDAALEDFDRALELDPDYAYAYLNRGIALYYLGRYELAIADLEKALELDPNDPERAlwlylaerkldpeka 193

                         90       100
                 ....*....|....*....|....*...
gi 345493108 188 -----KFRGRANQLLGKFEEATNDLRKA 210
Cdd:COG4785  194 lalllEDWATAYLLQGDTEEARELFKLA 221
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
 130-210 3.04e-08

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 54.35  E-value: 3.04e-08
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 345493108 130 KDYEKAIKLYTEAIELNPQASLLYAKRGQVYLLLNKPNACIRDCNRALELNPDSAAAHKFRGRANQLLGKFEEATNDLRK 209
Cdd:COG2956   56 GEYDRAIRIHQKLLERDPDRAEALLELAQDYLKAGLLDRAEELLEKLLELDPDDAEALRLLAEIYEQEGDWEKAIEVLER 135


                 .
gi 345493108 210 A 210
Cdd:COG2956  136 L 136
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
 122-226 8.57e-08

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 52.81  E-value: 8.57e-08
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 345493108 122 QAVSAFVEKDYEKAIKLYTEAIELNPQASLLYAKRGQVYLLLNKPNACIRDCNRALELNPDSAAAHKFRGRANQLLGKFE 201
Cdd:COG2956   14 KGLNYLLNGQPDKAIDLLEEALELDPETVEAHLALGNLYRRRGEYDRAIRIHQKLLERDPDRAEALLELAQDYLKAGLLD 93

                         90       100
                 ....*....|....*....|....*.
gi 345493108 202 EATNDLRKACKFD-FDEQADEWLREV 226
Cdd:COG2956   94 RAEELLEKLLELDpDDAEALRLLAEI 119
3a0801s09 TIGR00990
mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) ...
 105-216 1.85e-07

mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70); [Transport and binding proteins, Amino acids, peptides and amines]


Pssm-ID: 273380 [Multi-domain]  Cd Length: 615  Bit Score: 52.68  E-value: 1.85e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 345493108  105 DLQPTEEQIEESHEKRsqAVSAFVEKDYEKAIKLYTEAIELNPQASLLYAKRGQVYLLLNKPNACIRDCNRALELNPDSA 184
Cdd:TIGR00990 322 DLGKLGEKEAIALNLR--GTFKCLKGKHLEALADLSKSIELDPRVTQSYIKRASMNLELGDPDKAEEDFDKALKLNSEDP 399

                          90       100       110
                  ....*....|....*....|....*....|..
gi 345493108  185 AAHKFRGRANQLLGKFEEATNDLRKACKFDFD 216
Cdd:TIGR00990 400 DIYYHRAQLHFIKGEFAQAGKDYQKSIDLDPD 431
NrfG COG4235
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ...
 134-214 3.18e-07

Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443378 [Multi-domain]  Cd Length: 131  Bit Score: 48.85  E-value: 3.18e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 345493108 134 KAIKLYTEAIELNPQASLLYAKRGQVYLLLNKPNACIRDCNRALELNPDSAAAHKFRGRANQLLGKFEEATNDLRKACKF 213
Cdd:COG4235    1 EAIARLRQALAANPNDAEGWLLLGRAYLRLGRYDEALAAYEKALRLDPDNADALLDLAEALLAAGDTEEAEELLERALAL 80


                 .
gi 345493108 214 D 214
Cdd:COG4235   81 D 81
PEP_TPR_lipo TIGR02917
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ...
 101-224 3.48e-07

putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.


Pssm-ID: 274350 [Multi-domain]  Cd Length: 899  Bit Score: 52.01  E-value: 3.48e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 345493108  101 MGDSDLQPTEEQIEeSHEKRSQAvsAFVEKDYEKAIKLYTEAIELNPQAslLYAKRGQVYLLL--NKPNACIRDCNRALE 178
Cdd:TIGR02917 113 LPGKTLLDDEGAAE-LLALRGLA--YLGLGQLELAQKSYEQALAIDPRS--LYAKLGLAQLALaeNRFDEARALIDEVLT 187

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*.
gi 345493108  179 LNPDSAAAHKFRGRANQLLGKFEEATNDLRKACKFDFDEQADEWLR 224
Cdd:TIGR02917 188 ADPGNVDALLLKGDLLLSLGNIELALAAYRKAIALRPNNIAVLLAL 233
STI1 pfam17830
STI1 domain; This entry corresponds to the STI1 domain that is found in two copies in the Sti1 ...
 295-351 3.64e-07

STI1 domain; This entry corresponds to the STI1 domain that is found in two copies in the Sti1 protein.


Pssm-ID: 436075  Cd Length: 55  Bit Score: 46.40  E-value: 3.64e-07
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*..
gi 345493108  295 PQFAQFLNDPEVLQAFQDPEVAEAFKDISANPSNIFKYQSNPKVMAlinsVFSKNMG 351
Cdd:pfam17830   3 ELLAKLAANPETRALLSDPEFVAKLQQIQKNPSSLQQYMQDPRVMT----KLGVLMG 55
STI1 smart00727
Heat shock chaperonin-binding motif;
303-342 1.23e-06

Heat shock chaperonin-binding motif;


Pssm-ID: 128966  Cd Length: 41  Bit Score: 44.57  E-value: 1.23e-06
                           10        20        30        40
                   ....*....|....*....|....*....|....*....|.
gi 345493108   303 DPEVLQAFQDPEVAEAFKDISANPSNIFKY-QSNPKVMALI 342
Cdd:smart00727   1 DPEMALRLQNPQVQSLLQDMQQNPDMLAQMlQENPQLLQLI 41
PEP_TPR_lipo TIGR02917
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ...
 123-207 2.75e-06

putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.


Pssm-ID: 274350 [Multi-domain]  Cd Length: 899  Bit Score: 49.31  E-value: 2.75e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 345493108  123 AVSAFVEKDYEKAIKLYTEAIELNPQASLLYAKRGQVYLLLNKPNACIRDCNRALELNPDSAAAHKFRGRANQLLGKFEE 202
Cdd:TIGR02917 166 AQLALAENRFDEARALIDEVLTADPGNVDALLLKGDLLLSLGNIELALAAYRKAIALRPNNIAVLLALATILIEAGEFEE 245


                  ....*
gi 345493108  203 ATNDL 207
Cdd:TIGR02917 246 AEKHA 250
Spy COG3914
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ...
 130-233 2.92e-06

Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443119 [Multi-domain]  Cd Length: 658  Bit Score: 48.84  E-value: 2.92e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 345493108 130 KDYEKAIKLYTEAIELNPQASLLYAKRGQVYLLLNKPNACIRDCNRALELNPDSAAAHkfrgrANQLLGkfeeatndLRK 209
Cdd:COG3914  160 GRLEEAIAALRRALELDPDNAEALNNLGNALQDLGRLEEAIAAYRRALELDPDNADAH-----SNLLFA--------LRQ 226

                         90       100
                 ....*....|....*....|....
gi 345493108 210 ACKFDFDEQADEWLREVTPNARKI 233
Cdd:COG3914  227 ACDWEVYDRFEELLAALARGPSEL 250
BepA COG4783
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ...
 148-217 4.14e-06

Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443813 [Multi-domain]  Cd Length: 139  Bit Score: 45.95  E-value: 4.14e-06
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 345493108 148 QASLLYAKRGQVYLLLNKPNACIRDCNRALELNPDSAAAHKFRGRANQLLGKFEEATNDLRKACKFDFDE 217
Cdd:COG4783    2 ACAEALYALAQALLLAGDYDEAEALLEKALELDPDNPEAFALLGEILLQLGDLDEAIVLLHEALELDPDE 71
CpoB COG1729
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane ...
 124-212 1.48e-05

Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane constriction [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 441335 [Multi-domain]  Cd Length: 113  Bit Score: 43.44  E-value: 1.48e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 345493108 124 VSAFVEKDYEKAIKLYTEAIELNPQASLL---YAKRGQVYLLLNKPNACIRDCNRALELNPDS---AAAHKFRGRANQLL 197
Cdd:COG1729    1 KALLKAGDYDEAIAAFKAFLKRYPNSPLApdaLYWLGEAYYALGDYDEAAEAFEKLLKRYPDSpkaPDALLKLGLSYLEL 80

                         90
                 ....*....|....*
gi 345493108 198 GKFEEATNDLRKACK 212
Cdd:COG1729   81 GDYDKARATLEELIK 95
TadD COG5010
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ...
 103-214 1.51e-05

Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];


Pssm-ID: 444034 [Multi-domain]  Cd Length: 155  Bit Score: 44.57  E-value: 1.51e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 345493108 103 DSDLQPTEEQIEESHEKRSQAVSAFVEKDYEKAIKLYTEAIELNPQASLLYAKRGQVYLLLNKPNACIRDCNRALELNPD 182
Cdd:COG5010    7 FDRLPLYLLLLTKLRTLVEKYEAALAGANNTKEDELAAAGRDKLAKAFAIESPSDNLYNKLGDFEESLALLEQALQLDPN 86

                         90       100       110
                 ....*....|....*....|....*....|..
gi 345493108 183 SAAAHKFRGRANQLLGKFEEATNDLRKACKFD 214
Cdd:COG5010   87 NPELYYNLALLYSRSGDKDEAKEYYEKALALS 118
PEP_TPR_lipo TIGR02917
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ...
 109-216 1.71e-05

putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.


Pssm-ID: 274350 [Multi-domain]  Cd Length: 899  Bit Score: 46.62  E-value: 1.71e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 345493108  109 TEEQIEESHE-KRSQAVSAFVEKDYEKAIKLYTEAIELNPQASLLYAKRGQVYLLLNKPNACIRDCNRALELNPDSAAAH 187
Cdd:TIGR02917 321 ILKYAPNSHQaRRLLASIQLRLGRVDEAIATLSPALGLDPDDPAALSLLGEAYLALGDFEKAAEYLAKATELDPENAAAR 400

                          90       100
                  ....*....|....*....|....*....
gi 345493108  188 KFRGRANQLLGKFEEATNDLRKACKFDFD 216
Cdd:TIGR02917 401 TQLGISKLSQGDPSEAIADLETAAQLDPE 429
Spy COG3914
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ...
 110-214 2.45e-05

Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443119 [Multi-domain]  Cd Length: 658  Bit Score: 46.14  E-value: 2.45e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 345493108 110 EEQIEESHEKRSQAVSAFVEKDYEKAIKLYTEAIELNPQASLLYAKRGQVYLLLNKPNACIRDCNRALELNPDSAAAHKF 189
Cdd:COG3914   38 AAALGLALLLLAALAEAAAAALLALAAGEAAAAAAALLLLAALLELAALLLQALGRYEEALALYRRALALNPDNAEALFN 117

                         90       100
                 ....*....|....*....|....*
gi 345493108 190 RGRANQLLGKFEEATNDLRKACKFD 214
Cdd:COG3914  118 LGNLLLALGRLEEALAALRRALALN 142
PilF COG3063
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
159-216 4.06e-05

Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];


Pssm-ID: 442297 [Multi-domain]  Cd Length: 94  Bit Score: 41.69  E-value: 4.06e-05
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|....*...
gi 345493108 159 VYLLLNKPNACIRDCNRALELNPDSAAAHKFRGRANQLLGKFEEATnDLRKACKFDFD 216
Cdd:COG3063    1 LYLKLGDLEEAEEYYEKALELDPDNADALNNLGLLLLEQGRYDEAI-ALEKALKLDPN 57
TPR_11 pfam13414
TPR repeat;
126-163 5.55e-05

TPR repeat;


Pssm-ID: 315977 [Multi-domain]  Cd Length: 42  Bit Score: 39.76  E-value: 5.55e-05
                          10        20        30
                  ....*....|....*....|....*....|....*....
gi 345493108  126 AFVEK-DYEKAIKLYTEAIELNPQASLLYAKRGQVYLLL 163
Cdd:pfam13414   3 AYYEQgKYEEAIEAYKKALKLDPDNPEAYYNLGLAYYKL 41
ACL4-like cd24142
Assembly chaperone of ribosomal protein L4 and similar proteins; Assembly chaperone of RPL4 ...
 121-189 9.09e-05

Assembly chaperone of ribosomal protein L4 and similar proteins; Assembly chaperone of RPL4 (ACL4) acts as a chaperone for the L4 ribosomal subunit, encoded by RPL4A and RPL4B, and is required for hierarchical ribosome assembly. It is required for the soluble expression of newly synthesized RPL4 and for the protection of RPL4 from the Tom1-dependent cellular degradation machinery. ACL4 shields ribosomal protein L4 until timely release and insertion into the pre-ribosome is possible, once ribosomal protein L18 is present.


Pssm-ID: 467942 [Multi-domain]  Cd Length: 306  Bit Score: 43.77  E-value: 9.09e-05
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 345493108 121 SQAVSAFVEKDYEKAIKLYTEAIELNPQASLLYAKRGQVYLLLNKPNACIRDCNRALELNPDSAAAhKF 189
Cdd:cd24142    5 EKAEELLDQGNFELALKFLQRALELEPNNVEALELLGEILLELGDVEEAREVLLRAIELDPDGGYE-KY 72
PEP_TPR_lipo TIGR02917
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ...
 106-187 9.59e-05

putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.


Pssm-ID: 274350 [Multi-domain]  Cd Length: 899  Bit Score: 44.30  E-value: 9.59e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 345493108  106 LQPTEEQIEESHEKRSQAVSAFVEK-DYEKAIKLYTEAIELNPQASLLYAKRGQVYLLLNKPNACIRDCNRALELNPDSA 184
Cdd:TIGR02917 352 LSPALGLDPDDPAALSLLGEAYLALgDFEKAAEYLAKATELDPENAAARTQLGISKLSQGDPSEAIADLETAAQLDPELG 431


                  ...
gi 345493108  185 AAH 187
Cdd:TIGR02917 432 RAD 434
BepA COG4783
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ...
 130-183 1.31e-04

Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443813 [Multi-domain]  Cd Length: 139  Bit Score: 41.33  E-value: 1.31e-04
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|....
gi 345493108 130 KDYEKAIKLYTEAIELNPQASLLYAKRGQVYLLLNKPNACIRDCNRALELNPDS 183
Cdd:COG4783   86 GDYDEALALLEKALKLDPEHPEAYLRLARAYRALGRPDEAIAALEKALELDPDD 139
TPR_1 pfam00515
Tetratricopeptide repeat;
153-182 2.12e-04

Tetratricopeptide repeat;


Pssm-ID: 459840 [Multi-domain]  Cd Length: 34  Bit Score: 38.17  E-value: 2.12e-04
                          10        20        30
                  ....*....|....*....|....*....|
gi 345493108  153 YAKRGQVYLLLNKPNACIRDCNRALELNPD 182
Cdd:pfam00515   4 LYNLGNAYFKLGKYDEALEYYEKALELNPN 33
TadD COG5010
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ...
 123-181 2.31e-04

Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];


Pssm-ID: 444034 [Multi-domain]  Cd Length: 155  Bit Score: 41.10  E-value: 2.31e-04
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|....*....
gi 345493108 123 AVSAFVEKDYEKAIKLYTEAIELNPQASLLYAKRGQVYLLLNKPNACIRDCNRALELNP 181
Cdd:COG5010   95 ALLYSRSGDKDEAKEYYEKALALSPDNPNAYSNLAALLLSLGQDDEAKAALQRALGTSP 153
TPR_19 pfam14559
Tetratricopeptide repeat;
129-192 2.54e-04

Tetratricopeptide repeat;


Pssm-ID: 434038 [Multi-domain]  Cd Length: 65  Bit Score: 38.72  E-value: 2.54e-04
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 345493108  129 EKDYEKAIKLYTEAIELNPQASLLYAKRGQVYLLLNKPNACIRDCNRALELNPDSAAAHKFRGR 192
Cdd:pfam14559   1 EGDYAEALELLEQALAEDPDNAEARLGLAEALLALGRLDEAEALLAALPAADPDDPRYAALLAK 64
CpoB COG1729
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane ...
 123-196 5.95e-04

Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane constriction [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 441335 [Multi-domain]  Cd Length: 113  Bit Score: 39.20  E-value: 5.95e-04
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 345493108 123 AVSAFVEKDYEKAIKLYTEAIELNPQASLL---YAKRGQVYLLLNKPNACIRDCNRALELNPDSAAAHKFRGRANQL 196
Cdd:COG1729   37 GEAYYALGDYDEAAEAFEKLLKRYPDSPKApdaLLKLGLSYLELGDYDKARATLEELIKKYPDSEAAKEARARLARL 113
NrfG COG4235
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ...
 131-196 7.86e-04

Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443378 [Multi-domain]  Cd Length: 131  Bit Score: 39.22  E-value: 7.86e-04
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 345493108 131 DYEKAIKLYTEAIELNPQASLLYAKRGQVYLLLNKPNACIRDCNRALELNPDSAAAHKFRGRANQL 196
Cdd:COG4235   66 DTEEAEELLERALALDPDNPEALYLLGLAAFQQGDYAEAIAAWQKLLALLPADAPARLLEASIAEA 131
PilF COG3063
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
123-182 8.06e-04

Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];


Pssm-ID: 442297 [Multi-domain]  Cd Length: 94  Bit Score: 38.23  E-value: 8.06e-04
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|
gi 345493108 123 AVSAFVEKDYEKAIKlYTEAIELNPQASLLYAKRGQVYLLLNKPNACIRDCNRALELNPD 182
Cdd:COG3063   33 GLLLLEQGRYDEAIA-LEKALKLDPNNAEALLNLAELLLELGDYDEALAYLERALELDPS 91
TPR_9 pfam13371
Tetratricopeptide repeat;
126-194 9.37e-04

Tetratricopeptide repeat;


Pssm-ID: 463860 [Multi-domain]  Cd Length: 73  Bit Score: 37.58  E-value: 9.37e-04
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 345493108  126 AFVEKDYEKAIKLYTEAIELNPQASLLYAKRGQVYLLLNKPNACIRDCNRALELNPDSAAAHKFRGRAN 194
Cdd:pfam13371   5 YLREEDWERALAVVERLLLLAPDDPEERRDRGLLYAQLGCFQAALEDLEAYLELAPDAPDAEAIRELLR 73
TPR smart00028
Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum ...
 153-182 1.07e-03

Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.


Pssm-ID: 197478 [Multi-domain]  Cd Length: 34  Bit Score: 36.27  E-value: 1.07e-03
                           10        20        30
                   ....*....|....*....|....*....|
gi 345493108   153 YAKRGQVYLLLNKPNACIRDCNRALELNPD 182
Cdd:smart00028   4 LYNLGNAYLKLGDYDEALEYYEKALELDPN 33
COG4700 COG4700
Uncharacterized conserved protein ECs_4300, contains TPR-like domain [Function unknown];
130-258 1.10e-03

Uncharacterized conserved protein ECs_4300, contains TPR-like domain [Function unknown];


Pssm-ID: 443735 [Multi-domain]  Cd Length: 249  Bit Score: 40.25  E-value: 1.10e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 345493108 130 KDYEKAIKLYTEAIELNPQ--ASLLYaKRGQVYLLLNKPNACIRDCNRALELNPD--SAAAHKFRGRANQLLGKFEEATN 205
Cdd:COG4700  103 GRYDEAIELYEEALTGIFAddPHILL-GLAQALFELGRYAEALETLEKLIAKNPDfkSSDAHLLYARALEALGDLEAAEA 181

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 345493108 206 DLRKACKF--DFDEQAD--EWLREV--TPNARKI-----EEHKR--KRERKqMERQEREKLERLRK 258
Cdd:COG4700  182 ELEALARRysGPEARYRyaKFLARQgrTAEAKELleeilDEAKHmpKHYRR-LNREWIREAKKLLK 246
PEP_TPR_lipo TIGR02917
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ...
 130-212 1.35e-03

putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.


Pssm-ID: 274350 [Multi-domain]  Cd Length: 899  Bit Score: 40.84  E-value: 1.35e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 345493108  130 KDYEKAIKLYTEAIELNPQASLLYAKRGQVYLLLNKPNACIRDCNRALELNPDSAaahkfrgRANQLLGKFEEATNDLRK 209
Cdd:TIGR02917 615 GDLNKAVSSFKKLLALQPDSALALLLLADAYAVMKNYAKAITSLKRALELKPDNT-------EAQIGLAQLLLAAKRTES 687


                  ...
gi 345493108  210 ACK 212
Cdd:TIGR02917 688 AKK 690
TPR_9 pfam13371
Tetratricopeptide repeat;
158-207 2.34e-03

Tetratricopeptide repeat;


Pssm-ID: 463860 [Multi-domain]  Cd Length: 73  Bit Score: 36.43  E-value: 2.34e-03
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|
gi 345493108  158 QVYLLLNKPNACIRDCNRALELNPDSAAAHKFRGRANQLLGKFEEATNDL 207
Cdd:pfam13371   3 AIYLREEDWERALAVVERLLLLAPDDPEERRDRGLLYAQLGCFQAALEDL 52
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
177-217 2.41e-03

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 39.22  E-value: 2.41e-03
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|.
gi 345493108 177 LELNPDSAAAHKFRGRANQLLGKFEEATNDLRKACKFDFDE 217
Cdd:COG0457    1 LELDPDDAEAYNNLGLAYRRLGRYEEAIEDYEKALELDPDD 41
TPR_1 pfam00515
Tetratricopeptide repeat;
123-148 2.81e-03

Tetratricopeptide repeat;


Pssm-ID: 459840 [Multi-domain]  Cd Length: 34  Bit Score: 35.09  E-value: 2.81e-03
                          10        20
                  ....*....|....*....|....*.
gi 345493108  123 AVSAFVEKDYEKAIKLYTEAIELNPQ 148
Cdd:pfam00515   8 GNAYFKLGKYDEALEYYEKALELNPN 33
PEP_TPR_lipo TIGR02917
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ...
 133-255 3.82e-03

putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.


Pssm-ID: 274350 [Multi-domain]  Cd Length: 899  Bit Score: 39.30  E-value: 3.82e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 345493108  133 EKAIKLYTEAIELNPQASLLYAKRGQVYLLLNKPNACIRDCNRALELNPDSAAAHKFRGRANQLLGKFEEATNDLRKACK 212
Cdd:TIGR02917 550 EEAVAWLEKAAELNPQEIEPALALAQYYLGKGQLKKALAILNEAADAAPDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLA 629

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|...
gi 345493108  213 FDFDeqadewlrEVTPNARKIEEHKRKRERKQMERQEREKLER 255
Cdd:TIGR02917 630 LQPD--------SALALLLLADAYAVMKNYAKAITSLKRALEL 664
TPR_2 pfam07719
Tetratricopeptide repeat; This Pfam entry includes outlying Tetratricopeptide-like repeats ...
 122-148 4.12e-03

Tetratricopeptide repeat; This Pfam entry includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by pfam00515.


Pssm-ID: 429619 [Multi-domain]  Cd Length: 33  Bit Score: 34.42  E-value: 4.12e-03
                          10        20
                  ....*....|....*....|....*..
gi 345493108  122 QAVSAFVEKDYEKAIKLYTEAIELNPQ 148
Cdd:pfam07719   7 LGLAYYKLGDYEEALEAYEKALELDPN 33
TPR smart00028
Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum ...
 121-148 5.03e-03

Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.


Pssm-ID: 197478 [Multi-domain]  Cd Length: 34  Bit Score: 34.34  E-value: 5.03e-03
                           10        20
                   ....*....|....*....|....*...
gi 345493108   121 SQAVSAFVEKDYEKAIKLYTEAIELNPQ 148
Cdd:smart00028   6 NLGNAYLKLGDYDEALEYYEKALELDPN 33
3a0801s09 TIGR00990
mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) ...
 131-220 6.17e-03

mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70); [Transport and binding proteins, Amino acids, peptides and amines]


Pssm-ID: 273380 [Multi-domain]  Cd Length: 615  Bit Score: 38.43  E-value: 6.17e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 345493108  131 DYEKAIKLYTEAIELNPQASLLYAKRGQVYLLLNKPNACIRDCNRALELNPDSAAAHKFRGRANQLLGKFEEATNDLRKa 210
Cdd:TIGR00990 380 DPDKAEEDFDKALKLNSEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDPDFIFSHIQLGVTQYKEGSIASSMATFRR- 458

                          90
                  ....*....|
gi 345493108  211 CKFDFDEQAD 220
Cdd:TIGR00990 459 CKKNFPEAPD 468
TPR_17 pfam13431
Tetratricopeptide repeat;
138-171 8.92e-03

Tetratricopeptide repeat;


Pssm-ID: 433201 [Multi-domain]  Cd Length: 34  Bit Score: 33.67  E-value: 8.92e-03
                          10        20        30
                  ....*....|....*....|....*....|....
gi 345493108  138 LYTEAIELNPQASLLYAKRGQVYLLLNKPNACIR 171
Cdd:pfam13431   1 LYLKALELDPNNADAYYNLAVLLLELGQSETALQ 34
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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