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Conserved domains on  [gi|34537179|gb|AAQ74049|]
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ribosomal protein 40, partial [Amazona guatemalae]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
PTZ00254 super family cl36534
40S ribosomal protein SA; Provisional
 1-36 9.80e-20

40S ribosomal protein SA; Provisional


The actual alignment was detected with superfamily member PTZ00254:

Pssm-ID: 240331 [Multi-domain]  Cd Length: 249  Bit Score: 77.02  E-value: 9.80e-20
                         10        20        30
                 ....*....|....*....|....*....|....*.
gi 34537179    1 MWWMLAREVLRMRGTISREHPWEVMPDLYFYRDPEE 36
Cdd:PTZ00254 174 MYWLLAREVLRLRGTLPRDEEWDVMVDLFFWRDPEE 209
 
Name Accession Description Interval E-value
PTZ00254 PTZ00254
40S ribosomal protein SA; Provisional
 1-36 9.80e-20

40S ribosomal protein SA; Provisional


Pssm-ID: 240331 [Multi-domain]  Cd Length: 249  Bit Score: 77.02  E-value: 9.80e-20
                         10        20        30
                 ....*....|....*....|....*....|....*.
gi 34537179    1 MWWMLAREVLRMRGTISREHPWEVMPDLYFYRDPEE 36
Cdd:PTZ00254 174 MYWLLAREVLRLRGTLPRDEEWDVMVDLFFWRDPEE 209
uS2_euk_arch TIGR01012
ribosomal protein uS2, eukaryotic/archaeal form; This model describes the ribosomal protein of ...
 1-33 3.06e-15

ribosomal protein uS2, eukaryotic/archaeal form; This model describes the ribosomal protein of the cytosol and of Archaea, homologous to S2 of bacteria. It is designated typically as Sa in eukaryotes and Sa or S2 in the archaea. TIGR01011 describes the related protein of organelles and bacteria. [Protein synthesis, Ribosomal proteins: synthesis and modification]


Pssm-ID: 273394  Cd Length: 196  Bit Score: 64.37  E-value: 3.06e-15
                          10        20        30
                  ....*....|....*....|....*....|...
gi 34537179     1 MWWMLAREVLRMRGTISREHPWEVMPDLYFYRD 33
Cdd:TIGR01012 164 IYWLLAREILRMRGTISPDEDWDVMVEEFFYRD 196
 
Name Accession Description Interval E-value
PTZ00254 PTZ00254
40S ribosomal protein SA; Provisional
 1-36 9.80e-20

40S ribosomal protein SA; Provisional


Pssm-ID: 240331 [Multi-domain]  Cd Length: 249  Bit Score: 77.02  E-value: 9.80e-20
                         10        20        30
                 ....*....|....*....|....*....|....*.
gi 34537179    1 MWWMLAREVLRMRGTISREHPWEVMPDLYFYRDPEE 36
Cdd:PTZ00254 174 MYWLLAREVLRLRGTLPRDEEWDVMVDLFFWRDPEE 209
uS2_euk_arch TIGR01012
ribosomal protein uS2, eukaryotic/archaeal form; This model describes the ribosomal protein of ...
 1-33 3.06e-15

ribosomal protein uS2, eukaryotic/archaeal form; This model describes the ribosomal protein of the cytosol and of Archaea, homologous to S2 of bacteria. It is designated typically as Sa in eukaryotes and Sa or S2 in the archaea. TIGR01011 describes the related protein of organelles and bacteria. [Protein synthesis, Ribosomal proteins: synthesis and modification]


Pssm-ID: 273394  Cd Length: 196  Bit Score: 64.37  E-value: 3.06e-15
                          10        20        30
                  ....*....|....*....|....*....|...
gi 34537179     1 MWWMLAREVLRMRGTISREHPWEVMPDLYFYRD 33
Cdd:TIGR01012 164 IYWLLAREILRMRGTISPDEDWDVMVEEFFYRD 196
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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