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Conserved domains on  [gi|344190019|gb|AEM97832|]
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NADH dehydrogenase 5, partial (mitochondrion) [Chorthippus mollis]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
ND5 super family cl33362
NADH dehydrogenase subunit 5; Provisional
 1-214 1.12e-68

NADH dehydrogenase subunit 5; Provisional


The actual alignment was detected with superfamily member MTH00165:

Pssm-ID: 214444 [Multi-domain]  Cd Length: 573  Bit Score: 219.63  E-value: 1.12e-68
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 344190019   1 LFMCAGSMIHNLSDSQDIRFMGSIVNFMPLTSVCFNVSSLSLCGIPFLAGFYSSDLILEMVCLSWINCLVFFMYFISTGL 80
Cdd:MTH00165 308 LFLCAGSIIHNMSNSQDIRFMGGLSNFMPLTSSCFNISNLSLCGFPFLSGFYSKDLILEMVSMSNLNFFIFFLFFFSTGL 387

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 344190019  81 TASYSFRLFYYSMSGDNNFYSSFSFNDSSYFISFGMLSLLFVAVFGGSLLSWLIFPIPYMVVLPYYLSFLTIFTVVLGSY 160
Cdd:MTH00165 388 TVSYSFRLIYYSMSGDFNLKSLNNLSDESKFMLKSMILLLFMSIFGGSMLSWLIFPEPYMICLPFYLKLLTLFVILLGGW 467

                        170       180       190       200       210
                 ....*....|....*....|....*....|....*....|....*....|....
gi 344190019 161 LGYYFSNINFSYDLFSLNFLSFVSFSGSMWFMPYLSTGFISYLPLSMGYYSSKS 214
Cdd:MTH00165 468 LGYELSLMSLSYNLKSLKNYKLSSFLGSMWFMPFLSTYGISYYPLNLGSLSLKS 521
 
Name Accession Description Interval E-value
ND5 MTH00165
NADH dehydrogenase subunit 5; Provisional
 1-214 1.12e-68

NADH dehydrogenase subunit 5; Provisional


Pssm-ID: 214444 [Multi-domain]  Cd Length: 573  Bit Score: 219.63  E-value: 1.12e-68
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 344190019   1 LFMCAGSMIHNLSDSQDIRFMGSIVNFMPLTSVCFNVSSLSLCGIPFLAGFYSSDLILEMVCLSWINCLVFFMYFISTGL 80
Cdd:MTH00165 308 LFLCAGSIIHNMSNSQDIRFMGGLSNFMPLTSSCFNISNLSLCGFPFLSGFYSKDLILEMVSMSNLNFFIFFLFFFSTGL 387

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 344190019  81 TASYSFRLFYYSMSGDNNFYSSFSFNDSSYFISFGMLSLLFVAVFGGSLLSWLIFPIPYMVVLPYYLSFLTIFTVVLGSY 160
Cdd:MTH00165 388 TVSYSFRLIYYSMSGDFNLKSLNNLSDESKFMLKSMILLLFMSIFGGSMLSWLIFPEPYMICLPFYLKLLTLFVILLGGW 467

                        170       180       190       200       210
                 ....*....|....*....|....*....|....*....|....*....|....
gi 344190019 161 LGYYFSNINFSYDLFSLNFLSFVSFSGSMWFMPYLSTGFISYLPLSMGYYSSKS 214
Cdd:MTH00165 468 LGYELSLMSLSYNLKSLKNYKLSSFLGSMWFMPFLSTYGISYYPLNLGSLSLKS 521
NADH5_C pfam06455
NADH dehydrogenase subunit 5 C-terminus; This family represents the C-terminal region of ...
 84-214 6.30e-25

NADH dehydrogenase subunit 5 C-terminus; This family represents the C-terminal region of several NADH dehydrogenase subunit 5 proteins and is found in conjunction with pfam00361 and pfam00662.


Pssm-ID: 368917 [Multi-domain]  Cd Length: 181  Bit Score: 96.08  E-value: 6.30e-25
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 344190019   84 YSFRLFYYSMSGDNNFYSSFSFNDSSYFISFGMLSLLFVAVFGGSLLSWLIFPIPYMVVLPYYLSFLTIFTVVLGSYLGY 163
Cdd:pfam06455   1 YSFRLIYYVMTGSPRFSSLSPINENNPIMINPIKRLAIGSIIGGSLLSWLIFPKPPMMTMPLYLKLLALLVTILGLLLGL 80

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|.
gi 344190019  164 YFSNINFSYDLFSLNFlSFVSFSGSMWFMPYLSTGFISYLPLSMGYYSSKS 214
Cdd:pfam06455  81 ELSNLSNKQLKKSLNF-NLHSFSGSMWFFPNLSHRLIPKLSLKLGQKLAKQ 130
NuoL COG1009
Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ ...
 1-165 1.15e-19

Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ antiporter, MnhA subunit [Energy production and conversion]; Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ antiporter, MnhA subunit is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440633 [Multi-domain]  Cd Length: 608  Bit Score: 86.36  E-value: 1.15e-19
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 344190019   1 LFMCAGSMIHNLSdSQDIRFMGSIVNFMPLTSVCFNVSSLSLCGIPFLAGFYSSDLILE-MVCLSWINCLVFFMYFISTG 79
Cdd:COG1009  340 LFLGAGSVIHATG-TRDIRKMGGLRKKMPITAITFLIGALSLAGIPPFAGFFSKEAILEaALEAGGLGPLLLAVALLGAF 418

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 344190019  80 LTASYSFRLFYYSMSGDNNFYSSFSFNDSSYFISFGMLSLLFVAVFGGSLLSWL---------IFPIPYMVVLPYYLSFL 150
Cdd:COG1009  419 LTAFYSFRLFFLVFFGKPRPKTPKHPHESPWLMTLPLVVLAVLSLVLGLLLPGLlegllapaaVLGGELHLAHGLLLNAL 498

                        170
                 ....*....|....*
gi 344190019 151 TIFTVVLGSYLGYYF 165
Cdd:COG1009  499 PLLLSLLGIALGYLL 513
 
Name Accession Description Interval E-value
ND5 MTH00165
NADH dehydrogenase subunit 5; Provisional
 1-214 1.12e-68

NADH dehydrogenase subunit 5; Provisional


Pssm-ID: 214444 [Multi-domain]  Cd Length: 573  Bit Score: 219.63  E-value: 1.12e-68
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 344190019   1 LFMCAGSMIHNLSDSQDIRFMGSIVNFMPLTSVCFNVSSLSLCGIPFLAGFYSSDLILEMVCLSWINCLVFFMYFISTGL 80
Cdd:MTH00165 308 LFLCAGSIIHNMSNSQDIRFMGGLSNFMPLTSSCFNISNLSLCGFPFLSGFYSKDLILEMVSMSNLNFFIFFLFFFSTGL 387

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 344190019  81 TASYSFRLFYYSMSGDNNFYSSFSFNDSSYFISFGMLSLLFVAVFGGSLLSWLIFPIPYMVVLPYYLSFLTIFTVVLGSY 160
Cdd:MTH00165 388 TVSYSFRLIYYSMSGDFNLKSLNNLSDESKFMLKSMILLLFMSIFGGSMLSWLIFPEPYMICLPFYLKLLTLFVILLGGW 467

                        170       180       190       200       210
                 ....*....|....*....|....*....|....*....|....*....|....
gi 344190019 161 LGYYFSNINFSYDLFSLNFLSFVSFSGSMWFMPYLSTGFISYLPLSMGYYSSKS 214
Cdd:MTH00165 468 LGYELSLMSLSYNLKSLKNYKLSSFLGSMWFMPFLSTYGISYYPLNLGSLSLKS 521
ND5 MTH00209
NADH dehydrogenase subunit 5; Provisional
 1-206 3.69e-41

NADH dehydrogenase subunit 5; Provisional


Pssm-ID: 177252 [Multi-domain]  Cd Length: 564  Bit Score: 146.71  E-value: 3.69e-41
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 344190019   1 LFMCAGSMIHNLSDSQDIRFMGSIVNFMPLTSVCFNVSSLSLCGIPFLAGFYSSDLILEMVCLSWINCLVFFMYFISTGL 80
Cdd:MTH00209 304 LFICAGNIIHSHGHSQDIRMVGNLWYQMPITSICLNIANLSLCGIPFLAGFYSKDLILESMLESNMPIMTLILMFLSTSL 383

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 344190019  81 TASYSFRLFYYSMSGDNNFYSSFSFNDSSYFISFGMLSLLFVAVFGGSLLSWLIFPIPYMVVLPYYLSFLTIFTVVLGSY 160
Cdd:MTH00209 384 TAAYSMRLSYFSLWGPNSSKSLNSSFDQNKLNLKPMLVLTLGSITGGSVMSWVMVPSVNSVVLPWFLKLLPIMLILFGVL 463

                        170       180       190       200
                 ....*....|....*....|....*....|....*....|....*.
gi 344190019 161 LGYYFSNINFsydlFSLNFLSFVSFSGSMWFMPYLSTGFISYLPLS 206
Cdd:MTH00209 464 LMYMVLKKNF----FLIKGYKVNYFLSQMWFLPDLSSQPVNKFTMK 505
ND5 MTH00207
NADH dehydrogenase subunit 5; Provisional
 1-214 3.69e-38

NADH dehydrogenase subunit 5; Provisional


Pssm-ID: 164753 [Multi-domain]  Cd Length: 572  Bit Score: 138.74  E-value: 3.69e-38
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 344190019   1 LFMCAGSMIHNLSDSQDIRFMGSIVNFMPLTSVCFNVSSLSLCGIPFLAGFYSSDLILEMVCLSWINCLVFFMYFISTGL 80
Cdd:MTH00207 308 LFVCAGSLIHSHHHSQDLRTMGNLTNQMPLTTSCLLIANLALCGSPFLSGFYSKDLILESSLFYPHNSLMILMIFLATAL 387

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 344190019  81 TASYSFRLFYYSMSGDNNFYSSFSFNDSSYFISFGMLSLLFVAVFGGSLLSWLIFPIPYMVVLPYYLSFLTIFTVVLGSY 160
Cdd:MTH00207 388 TAAYSTRFTLAVLWSPNSSSPYHHLEDEDKSLTTPMLLLTLGAITSGSALNWWLPTPQEEPILPLQYKLLPLLVVTLGAL 467

                        170       180       190       200       210
                 ....*....|....*....|....*....|....*....|....*....|....
gi 344190019 161 LGYYFSNINFSYDLFSLNFLSFVSFSGSMWFMPYLSTGFISYLPLSMGYYSSKS 214
Cdd:MTH00207 468 LAWLFTTPNITKTPLLINNPLSHFASCLMWFLVPLSSQFIMSTPMNLSHNYLKL 521
ND5 MTH00151
NADH dehydrogenase subunit 5; Provisional
 1-208 2.65e-35

NADH dehydrogenase subunit 5; Provisional


Pssm-ID: 214436 [Multi-domain]  Cd Length: 565  Bit Score: 130.73  E-value: 2.65e-35
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 344190019   1 LFMCAGSMIHNLSDSQDIRFMGSIVNFMPLTSVCFNVSSLSLCGIPFLAGFYSSDLILEMVCLSWINCLVFFMYFISTGL 80
Cdd:MTH00151 305 LFLCAGSIIHSSSGTQDIRLLGSLFLSLPLTSGCLNISSLSLCGAPFLSGFYSKDLILESSLMSPTSLLMVLLMFVGVGL 384

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 344190019  81 TASYSFRLFYYSMSGDNNFYSSFSFNDSSYFISFGMLSLLFVAVFGGSLLSWLIFPIPYMVVLPYYLSFLTIFTVVLGSY 160
Cdd:MTH00151 385 TALYSARLSFCLVWGSMKSSSLSSKSDEDFYVSLPMLLLSLGALIGGKLLQSLFEGFSEEFFLPSYLKLLIGFVILLGLF 464

                        170       180       190       200
                 ....*....|....*....|....*....|....*....|....*...
gi 344190019 161 LGyyFSNINFSYDLFSLNFLSFvsFSGSMWFMPYLSTGFISYLPLSMG 208
Cdd:MTH00151 465 LS--FGFWDSGFSSSKMVKLSF--FFSSMWFLSPLSSQPLKSLSLKLS 508
ND5 MTH00108
NADH dehydrogenase subunit 5; Provisional
 1-212 2.78e-29

NADH dehydrogenase subunit 5; Provisional


Pssm-ID: 177170 [Multi-domain]  Cd Length: 602  Bit Score: 114.18  E-value: 2.78e-29
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 344190019   1 LFMCAGSMIHNLSDSQDIRFMGSIVNFMPLTSVCFNVSSLSLCGIPFLAGFYSSDLILEMVCLSWINCLVFFMYFISTGL 80
Cdd:MTH00108 339 LFMCSGSIIHNLNDEQDIRKMGGLFKTLPFTSTALIIGSLALTGMPFLTGFYSKDLIIEAANTSYTNAWALLITLIATSL 418

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 344190019  81 TASYSFRLFYYSMSGDNNFYSSFSFNDSSYFISFGMLSLLFVAVFGGSLLSWLIFP--IPYMvVLPYYLSFLTIFTVVLG 158
Cdd:MTH00108 419 TAAYSTRIIFFALLGQPRFPPLITINENNPLLINPIKRLLLGSIFAGFLISNNIPPttIPQM-TMPLYLKLTALAVTILG 497

                        170       180       190       200       210
                 ....*....|....*....|....*....|....*....|....*....|....
gi 344190019 159 SYLGYYFSNInfSYDLFSLNFLSFVSFSGSMWFMPYLSTGFISYLPLSMGYYSS 212
Cdd:MTH00108 498 FILALELNLL--TNNLKFKYPSNTFKFSNMLGYFPTIMHRLPPYMNLTMSQKLA 549
ND5 MTH00004
NADH dehydrogenase subunit 5; Validated
 1-169 2.54e-28

NADH dehydrogenase subunit 5; Validated


Pssm-ID: 214398 [Multi-domain]  Cd Length: 602  Bit Score: 111.41  E-value: 2.54e-28
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 344190019   1 LFMCAGSMIHNLSDSQDIRFMGSIVNFMPLTSVCFNVSSLSLCGIPFLAGFYSSDLILEMVCLSWINCLVFFMYFISTGL 80
Cdd:MTH00004 338 LFLCSGSIIHNLNNEQDIRKMGGLQKTLPITSSCLTIGNLALMGTPFLSGFYSKDTIIETLNTSYLNAWALLLTLLATSF 417

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 344190019  81 TASYSFRLFYYSMSGDNNFYSSFSFNDSSYFISFGMLSLLFVAVFGGSLLSWLIFPI-PYMVVLPYYLSFLTIFTVVLGS 159
Cdd:MTH00004 418 TAAYSLRMILLVQTGFPRTPPTTPINENTPTIINPITRLALGSILAGLLISSTILPTkTPPMTMPTTTKLAALIVTILGI 497

                        170
                 ....*....|
gi 344190019 160 YLGYYFSNIN 169
Cdd:MTH00004 498 LLALELSNMT 507
ND5 MTH00208
NADH dehydrogenase subunit 5; Provisional
 1-203 1.58e-27

NADH dehydrogenase subunit 5; Provisional


Pssm-ID: 177251 [Multi-domain]  Cd Length: 628  Bit Score: 109.29  E-value: 1.58e-27
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 344190019   1 LFMCAGSMIHNLSDSQDIRFMGSIVNFMPLTSVCFNVSSLSLCGIPFLAGFYSSDLILEMVCLSWINCLVFFMYFISTGL 80
Cdd:MTH00208 365 LFLCSGSIIHSLNNEQDLRKMGGLSFLLPVTSSCIILGSLALMGTPFLAGFYSKDLILEAGLASISNLLSIILALIATLL 444

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 344190019  81 TASYSFRLFYYSMSGDNNFYSSFSFNDSSYFISFGMLSLLFVAVFGGSLLSWLIFPIPyMVVLPYYLSFLTIFTVVLGSY 160
Cdd:MTH00208 445 TAVYSFRIIFFCFLNNPSFSPLSPISEENPNLTNPLLRLAIGTIISGWFFSNFVFNLP-PLTLPLILKSLPLIVTIIGAA 523

                        170       180       190       200
                 ....*....|....*....|....*....|....*....|...
gi 344190019 161 LGYYFSNiNFSYDLFSLNFLSFVSFSgsmWFMPYLSTGFISYL 203
Cdd:MTH00208 524 FSFSFLL-SLSSNPINSNFFSFLSNQ---WFFVNISHSIIISF 562
ND5 MTH00211
NADH dehydrogenase subunit 5; Provisional
 1-212 2.26e-27

NADH dehydrogenase subunit 5; Provisional


Pssm-ID: 214459 [Multi-domain]  Cd Length: 597  Bit Score: 108.50  E-value: 2.26e-27
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 344190019   1 LFMCAGSMIHNLSDSQDIRFMGSIVNFMPLTSVCFNVSSLSLCGIPFLAGFYSSDLILEMVCLSWINCLVFFMYFISTGL 80
Cdd:MTH00211 333 LFMCSGSIIHGLNNEQDIRKMGGLSKNLPFTSSCLFLGSLALMGFPFLSGFFSKDLILESMNGSYLNAWALLLTLLATSL 412

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 344190019  81 TASYSFRLFYYSMSGDNNFYSSFSFNDSSYFISFGMLSLLFVAVFGGSLLSWLIFPIPYMVV-LPYYLSFLTIFTVVLGS 159
Cdd:MTH00211 413 TAAYSFRLIFLSLGGYPRFLSLSPINENYKLLKNPLKRLALGSILAGFIITSNLPPEKPEILsLPFLLKLMPLLVTIVGL 492

                        170       180       190       200       210
                 ....*....|....*....|....*....|....*....|....*....|...
gi 344190019 160 YLGYYFSNInfsydLFSLNFLSFVSFSGSMWFMPYLSTGFISYLPLSMGYYSS 212
Cdd:MTH00211 493 LLGLELVNL-----THKQLKTSTLSFSNMLGYYPPIIHRLLPKLSLKWGQTLS 540
ND5 MTH00066
NADH dehydrogenase subunit 5; Provisional
 1-195 8.09e-27

NADH dehydrogenase subunit 5; Provisional


Pssm-ID: 214416 [Multi-domain]  Cd Length: 598  Bit Score: 106.92  E-value: 8.09e-27
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 344190019   1 LFMCAGSMIHNLSDSQDIRFMGSIVNFMPLTSVCFNVSSLSLCGIPFLAGFYSSDLILEMVCLSWINCLVFFMYFISTGL 80
Cdd:MTH00066 336 LFLCSGSIIHSLNDEQDIRKMGGLQKALPITTSCLTIGSLALTGTPFLAGFFSKDAIIEAMNTSNLNSWALILTLIATSF 415

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 344190019  81 TASYSFRLFYYSMSGDNNFYSSFSFNDSSYFISFGMLSLLFVAVFGGSLLSWLIFPI-PYMVVLPYYLSFLTIFTVVLGS 159
Cdd:MTH00066 416 TAVYSFRIIYFSSMKFPRSLPLSPINENNPLIINPIKRLAWGSIIAGLLIIFNILPMkPQILTMPTFMKLAALLVTLLGL 495

                        170       180       190
                 ....*....|....*....|....*....|....*.
gi 344190019 160 YLGYYFSNINFSYDLFSLNFlsfvSFSGSMWFMPYL 195
Cdd:MTH00066 496 LIALDLAKITSKTTPKTKMH----SFSNLLAFFPTI 527
NADH5_C pfam06455
NADH dehydrogenase subunit 5 C-terminus; This family represents the C-terminal region of ...
 84-214 6.30e-25

NADH dehydrogenase subunit 5 C-terminus; This family represents the C-terminal region of several NADH dehydrogenase subunit 5 proteins and is found in conjunction with pfam00361 and pfam00662.


Pssm-ID: 368917 [Multi-domain]  Cd Length: 181  Bit Score: 96.08  E-value: 6.30e-25
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 344190019   84 YSFRLFYYSMSGDNNFYSSFSFNDSSYFISFGMLSLLFVAVFGGSLLSWLIFPIPYMVVLPYYLSFLTIFTVVLGSYLGY 163
Cdd:pfam06455   1 YSFRLIYYVMTGSPRFSSLSPINENNPIMINPIKRLAIGSIIGGSLLSWLIFPKPPMMTMPLYLKLLALLVTILGLLLGL 80

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|.
gi 344190019  164 YFSNINFSYDLFSLNFlSFVSFSGSMWFMPYLSTGFISYLPLSMGYYSSKS 214
Cdd:pfam06455  81 ELSNLSNKQLKKSLNF-NLHSFSGSMWFFPNLSHRLIPKLSLKLGQKLAKQ 130
ND5 MTH00137
NADH dehydrogenase subunit 5; Provisional
 1-93 1.93e-24

NADH dehydrogenase subunit 5; Provisional


Pssm-ID: 214428 [Multi-domain]  Cd Length: 611  Bit Score: 100.29  E-value: 1.93e-24
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 344190019   1 LFMCAGSMIHNLSDSQDIRFMGSIVNFMPLTSVCFNVSSLSLCGIPFLAGFYSSDLILEMVCLSWINCLVFFMYFISTGL 80
Cdd:MTH00137 344 LFLCSGSIIHSLNDEQDIRKMGGLHHLTPFTSSCLTIGSLALTGTPFLAGFFSKDAIIEALNTSHLNAWALTLTLIATSF 423

                         90
                 ....*....|....
gi 344190019  81 TASYSFRL-FYYSM 93
Cdd:MTH00137 424 TAVYSLRVvFFVSM 437
ND5 MTH00020
NADH dehydrogenase subunit 5; Reviewed
 1-201 1.77e-20

NADH dehydrogenase subunit 5; Reviewed


Pssm-ID: 214400 [Multi-domain]  Cd Length: 610  Bit Score: 88.98  E-value: 1.77e-20
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 344190019   1 LFMCAGSMIHNLSDSQDIRFMGSIVNFMPLTSVCFNVSSLSLCGIPFLAGFYSSDLILEMVCLSWINCLVFFMYFISTGL 80
Cdd:MTH00020 339 LFLSAGSVIHALSDEQDMRKMGGLISFLPLTYIFFLIGSLSLMGFPYLTGFYSKDLILELAFGQYYLIFAYWLGCFSALL 418

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 344190019  81 TASYSFRLFYYS-MSGDNNFYSSFSF-NDSSYFISFGMLSLLFVAVFGGSLLSWLIF--------PIPYMV-VLPYYLSF 149
Cdd:MTH00020 419 TAFYSIRLIYLTfLSNTNLKKAVFFHlHEGDWNLLLPLGILALGSIFVGYLAKEMIWsfqitlppIVPLSIkLLPVFLSL 498

                        170       180       190       200       210
                 ....*....|....*....|....*....|....*....|....*....|...
gi 344190019 150 LTIFTV-VLGSYLGYYFSNINFSYDLFSLNFLsfvsfsGSMWFMPYLSTGFIS 201
Cdd:MTH00020 499 GGIGLViILYFYSSKTFRVPFSFIGRNSYTFL------GSAWQFNYILNYFLI 545
NuoL COG1009
Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ ...
 1-165 1.15e-19

Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ antiporter, MnhA subunit [Energy production and conversion]; Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ antiporter, MnhA subunit is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440633 [Multi-domain]  Cd Length: 608  Bit Score: 86.36  E-value: 1.15e-19
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 344190019   1 LFMCAGSMIHNLSdSQDIRFMGSIVNFMPLTSVCFNVSSLSLCGIPFLAGFYSSDLILE-MVCLSWINCLVFFMYFISTG 79
Cdd:COG1009  340 LFLGAGSVIHATG-TRDIRKMGGLRKKMPITAITFLIGALSLAGIPPFAGFFSKEAILEaALEAGGLGPLLLAVALLGAF 418

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 344190019  80 LTASYSFRLFYYSMSGDNNFYSSFSFNDSSYFISFGMLSLLFVAVFGGSLLSWL---------IFPIPYMVVLPYYLSFL 150
Cdd:COG1009  419 LTAFYSFRLFFLVFFGKPRPKTPKHPHESPWLMTLPLVVLAVLSLVLGLLLPGLlegllapaaVLGGELHLAHGLLLNAL 498

                        170
                 ....*....|....*
gi 344190019 151 TIFTVVLGSYLGYYF 165
Cdd:COG1009  499 PLLLSLLGIALGYLL 513
ND5 MTH00210
NADH dehydrogenase subunit 5; Provisional
 1-210 1.39e-19

NADH dehydrogenase subunit 5; Provisional


Pssm-ID: 177253 [Multi-domain]  Cd Length: 616  Bit Score: 86.22  E-value: 1.39e-19
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 344190019   1 LFMCAGSMIHNLSDSQDIRFMGSIVNFMPLTSVCFNVSSLSLCGIPFLAGFYSSDLILEMVCLSWINCLVFFMYFISTGL 80
Cdd:MTH00210 340 LFLSAGSVIHAVSDEQDMRKMGGLIKSIPFTYVMILIGSLSLMGFPYLTGFYSKDLILELTYDKYYIAFAYWLGSFSALL 419

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 344190019  81 TASYSFRLFYYSMSGDNNFYSSFSFN--DSSYFISFGMLSLLFVAVFGGSLLSWLIFPIPYMVVLPYYLSFLTIFTVVLG 158
Cdd:MTH00210 420 TAFYSIRLIYLTFITNTNSKKEVFIGvhESSWNITFPLLLLAFGSIFVGYLGKEVVLSNVIPPIVPNSIKMIPLLFSLLG 499

                        170       180       190       200       210
                 ....*....|....*....|....*....|....*....|....*....|....*...
gi 344190019 159 SYLGYYFSNINFSYD------LFSLNFLSFVSFSGSMWFMPYLSTGFISYLPLSMGYY 210
Cdd:MTH00210 500 ALLAFVIYNSMVFLIkisrrgVSIRLYHVIYTFLNSAWQFNYVINHFIVKNIWKFGHL 557
PRK06590 PRK06590
NADH:ubiquinone oxidoreductase subunit L; Reviewed
 1-89 4.04e-19

NADH:ubiquinone oxidoreductase subunit L; Reviewed


Pssm-ID: 235836 [Multi-domain]  Cd Length: 624  Bit Score: 84.82  E-value: 4.04e-19
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 344190019   1 LFMCAGSMIHNLSDSQDIRFMGSIVNFMPLTSVCFNVSSLSLCGIPFLAGFYSSDLILEmVCLSWINCLVFFMYFISTGL 80
Cdd:PRK06590 346 LFLGAGSVIHAMHHEQDIRKMGGLRKKMPVTYATFLIGTLALIGIPPFAGFFSKDEILE-AAFANGHINLFVAGLVGAFL 424


                 ....*....
gi 344190019  81 TASYSFRLF 89
Cdd:PRK06590 425 TAFYSFRLI 433
PRK07376 PRK07376
NADH-quinone oxidoreductase subunit L;
1-96 2.89e-16

NADH-quinone oxidoreductase subunit L;


Pssm-ID: 236005 [Multi-domain]  Cd Length: 673  Bit Score: 76.60  E-value: 2.89e-16
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 344190019   1 LFMCAGSMIHNLSD--------SQDIRFMGSIVNFMPLTSVCFNVSSLSLCGIPFLAGFYSSDLILEMVCLSwiNCLVFF 72
Cdd:PRK07376 356 LFLGSGSVIHGMEEvvghdpvlAQDMRLMGGLRKYMPITAITFLIGCLAISGIPPFAGFWSKDEILGAAFEA--NPALWF 433

                         90       100
                 ....*....|....*....|....
gi 344190019  73 MYFISTGLTASYSFRLFYYSMSGD 96
Cdd:PRK07376 434 VGFLTAGMTAFYMFRMYFLTFEGE 457
ndhF CHL00025
NADH dehydrogenase subunit 5
 1-114 9.65e-10

NADH dehydrogenase subunit 5


Pssm-ID: 214338 [Multi-domain]  Cd Length: 741  Bit Score: 57.59  E-value: 9.65e-10
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 344190019   1 LFMCAGSMIHNL--------SDSQDIRFMGSIVNFMPLTSVCFNVSSLSLCGIPFLAGFYSSDLILEMvclSWINCLVF- 71
Cdd:CHL00025 356 LFLGSGSVIHSMepivgyspDKSQNMVLMGGLRKYMPITKTTFLLGTLSLCGIPPLACFWSKDEILND---SWLYSPIFa 432

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|....*.
gi 344190019  72 FMYFISTGLTASYSFRLFYYSMSGD---NNFYSSFSFNDSSYFISF 114
Cdd:CHL00025 433 IIAWSTAGLTAFYMFRIYLLTFEGHlrvHFQNYSGKKNSSFYSISL 478
Proton_antipo_M pfam00361
Proton-conducting membrane transporter; This is a family of membrane transporters that ...
 1-77 2.13e-09

Proton-conducting membrane transporter; This is a family of membrane transporters that inlcudes some 7 of potentially 14-16 TM regions. In many instances the family forms part of complex I that catalyzes the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane, and in this context is a combination predominantly of subunits 2, 4, 5, 14, L, M and N. In many bacterial species these proteins are probable stand-alone transporters not coupled with oxidoreduction. The family in total represents homologs across the phyla.


Pssm-ID: 425636 [Multi-domain]  Cd Length: 291  Bit Score: 55.78  E-value: 2.13e-09
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 344190019    1 LFMCAGSMIHNLSDSQDIRFMGSIVNFMPLTSVCFNVSSLSLCGIPFLAGFYSSDLILEMVCLSWINCLVFFMYFIS 77
Cdd:pfam00361 215 LFLCAGSVIYRRVHTRNIRDYGGLAKTMPILALVFLVAMLSLAGLPPTAGFLGKFLILAAAVAASWIFLVLAGVVGS 291
ND5 MTH00032
NADH dehydrogenase subunit 5; Provisional
 1-60 7.31e-09

NADH dehydrogenase subunit 5; Provisional


Pssm-ID: 214407 [Multi-domain]  Cd Length: 669  Bit Score: 54.96  E-value: 7.31e-09
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 344190019   1 LFMCAGSMIHNLS-DSQDIRFMGSIVNFMPLTSVCFNVSSLSLCGIPFLAGFYSSDLILEM 60
Cdd:MTH00032 355 LFLSAGSVIHSTTvDEQDMRKMGGLIHSIPFTYTMMLIGSFSIMGLPYLTGFYSKDLILEL 415
HyfB COG0651
Formate hydrogenlyase subunit 3/Multisubunit Na+/H+ antiporter, MnhD subunit [Energy ...
 1-91 2.24e-06

Formate hydrogenlyase subunit 3/Multisubunit Na+/H+ antiporter, MnhD subunit [Energy production and conversion, Inorganic ion transport and metabolism];


Pssm-ID: 440416 [Multi-domain]  Cd Length: 430  Bit Score: 47.45  E-value: 2.24e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 344190019   1 LFMCAGSMIHNLsDSQDIRFMGSIVNFMPLTSVCFNVSSLSLCGIPFLAGFYSSDLILEMVcLSWINCLVFFMYFISTGL 80
Cdd:COG0651  340 LFLAAGAIERAT-GTRDLDKLGGLGKRMPLTAAAFLIGALALAGLPPLSGFVSKWLLLQAA-LEAGAWLLAAVLLLSSLL 417

                         90
                 ....*....|.
gi 344190019  81 TASYSFRLFYY 91
Cdd:COG0651  418 TLAYFVRIFGR 428
PRK12667 PRK12667
putative monovalent cation/H+ antiporter subunit D; Reviewed
 1-90 1.61e-05

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 237167 [Multi-domain]  Cd Length: 520  Bit Score: 44.96  E-value: 1.61e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 344190019   1 LFMCAGSMIHNlSDSQDIRFMGSIVNFMPLTSVCFNVSSLSLCGIPFLAGFYSSDLILEMVCLSWINCLVFFMyFISTGL 80
Cdd:PRK12667 363 LFLASGVFIHA-AGTRDIDELAGLGRKMPIASFAFLIGALSLVGIPPLNGFFSKLLLFNALLESGFYLPALVL-LIASAI 440

                         90
                 ....*....|
gi 344190019  81 TASYSFRLFY 90
Cdd:PRK12667 441 SLVGYFRAWY 450
ND5 MTH00095
NADH dehydrogenase subunit 5; Provisional
 1-210 2.24e-05

NADH dehydrogenase subunit 5; Provisional


Pssm-ID: 177158 [Multi-domain]  Cd Length: 527  Bit Score: 44.52  E-value: 2.24e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 344190019   1 LFMCAGSMIHNLSDSQDIRFMGSIVNFMPLTSVCFNVSSLSLCGIPFLAGFYSSDLILEMVCLSWINCLVFFMYFISTGL 80
Cdd:MTH00095 292 LFMQVGYLIHSNFGQQDGRNYSNNGNLPMFIQLQLLVTLFCLCGLMFTSGMVSKELILELFFFNNYMIFFSLMFFFSVFL 371

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 344190019  81 TASYSFRLFyysMSGDNNFYSSFSFNDSSYFISFGMLSLLFVAVFggsLLSWLIFPIPYMVVLPYYLSFLTIFTVVLgsy 160
Cdd:MTH00095 372 TFGYSYRLW---KSFFLSFSKVVNVYSSSVLMNFLSLMLVFFSVF---FLWWLNFNLLNLPSLFLYLDFYVPLFYLF--- 442

                        170       180       190       200       210
                 ....*....|....*....|....*....|....*....|....*....|
gi 344190019 161 LGYYFSNINFSYDLFSLNFLSFVSFSGSMWFMPYLSTGFISYLPLSMGYY 210
Cdd:MTH00095 443 MIMLFSFFFFKLLFKELKYKFFVDYFAKNVIYKLKNLKFFDLFLNKFGYK 492
PRK07390 PRK07390
NAD(P)H-quinone oxidoreductase subunit F; Validated
 1-82 4.59e-05

NAD(P)H-quinone oxidoreductase subunit F; Validated


Pssm-ID: 236008 [Multi-domain]  Cd Length: 613  Bit Score: 43.75  E-value: 4.59e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 344190019   1 LFMCAGSMIHNlSDSQDIRFMGSIVNFMPLTSVCFNVSSLSLCGIPFLAGFYSsdlILEMVCLSWINCLVFFMYFIST-G 79
Cdd:PRK07390 349 LFMSVGSIILT-TITQDLTELGGLWSRMPATTLAFLVGSAGLVALLPLGGFWA---LLRLADGLWAVSPWLVGVLLLVnA 424


                 ...
gi 344190019  80 LTA 82
Cdd:PRK07390 425 LTA 427
PRK08667 PRK08667
hydrogenase membrane subunit; Validated
 1-59 1.83e-04

hydrogenase membrane subunit; Validated


Pssm-ID: 236331 [Multi-domain]  Cd Length: 644  Bit Score: 41.64  E-value: 1.83e-04
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|....*....
gi 344190019   1 LFMCAGSMIHNLSDsQDIRFMGSIVNFMPLTSVCFNVSSLSLCGIPFLAGFYSSDLILE 59
Cdd:PRK08667 349 LFLTAGSVVHATGT-RNIEKMGGLVKLMPYTSALFLVGAVSIAALPPFNGFASELLLYE 406
PRK12650 PRK12650
DUF4040 family protein;
1-59 6.39e-04

DUF4040 family protein;


Pssm-ID: 237158 [Multi-domain]  Cd Length: 962  Bit Score: 40.03  E-value: 6.39e-04
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|....*....
gi 344190019   1 LFMCAGSMIHNlSDSQDIRFMGSIVNFMPLTSVCFNVSSLSLCGIPFLAGFYSSDLILE 59
Cdd:PRK12650 340 LFMLIGVVDHQ-AGTRDIRRLGSLWRRMPFTFVSVTIAALSMAAVPPLFGFVSKEGMLT 397
PRK08375 PRK08375
putative monovalent cation/H+ antiporter subunit D; Reviewed
 1-91 1.05e-03

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 236251 [Multi-domain]  Cd Length: 487  Bit Score: 39.48  E-value: 1.05e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 344190019   1 LFMCAGSMIHNlSDSQDIRFMGSIVNFMPLTSVCFNVSSLSLCGIPFLAGFYS-SDLILEMVCLSWINCLVFFMyfISTG 79
Cdd:PRK08375 339 LFLAAGAIEVT-YGTRRLSELSGLGRRMPLTAAAFAVASLSLIGVPPTSGFVSkWYLVVGAVEAGQWLVLAVLL--ASSL 415

                         90
                 ....*....|..
gi 344190019  80 LTASYSFRLFYY 91
Cdd:PRK08375 416 LALLYFLRIWYR 427
PRK06521 PRK06521
hydrogenase 4 subunit B; Validated
 1-64 1.86e-03

hydrogenase 4 subunit B; Validated


Pssm-ID: 235820 [Multi-domain]  Cd Length: 667  Bit Score: 38.72  E-value: 1.86e-03
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 344190019   1 LFMCAGSMIHNLSdSQDIRFMGSIVNFMPLTSVCFNVSSLSLCGIPFLAGFYSSDLILEMVCLS 64
Cdd:PRK06521 355 LFLGAGAVLHATG-TRDMEKLGGLIRRMPWTAWAFLIGCLAISALPPLNGFVSEWLLLQSLLSS 417
PRK12648 PRK12648
putative monovalent cation/H+ antiporter subunit A; Reviewed
 1-87 3.91e-03

putative monovalent cation/H+ antiporter subunit A; Reviewed


Pssm-ID: 237157 [Multi-domain]  Cd Length: 948  Bit Score: 37.86  E-value: 3.91e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 344190019   1 LFMCAGSMIHNlSDSQDIRFMGSIVNFMPLTSVCFNVSSLSLCGIPFLAGFYSSDLIL-EMVCLSWINCLVFFMYFIST- 78
Cdd:PRK12648 339 LFMAAGIIDHE-TGTRDMRRLSGLRRLMPITATLAMVAAAAMAGVPLLNGFLSKEMFFaETLDTHLLGSLDWLLPVAATl 417

                         90
                 ....*....|.
gi 344190019  79 --GLTASYSFR 87
Cdd:PRK12648 418 agAFSVAYSLR 428
PRK05846 PRK05846
NADH:ubiquinone oxidoreductase subunit M; Reviewed
 1-58 5.56e-03

NADH:ubiquinone oxidoreductase subunit M; Reviewed


Pssm-ID: 235622 [Multi-domain]  Cd Length: 497  Bit Score: 37.10  E-value: 5.56e-03
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|....*...
gi 344190019   1 LFMCAGSMIHNLSdSQDIRFMGSIVNFMPLTSVCFNVSSLSLCGIPFLAGFYSSDLIL 58
Cdd:PRK05846 345 LFLLVGVLYDRLH-TRDIADYGGLAKVMPVLAAFFLFFAMASLGLPGTSGFVGEFLIL 401
PRK12646 PRK12646
DUF4040 family protein;
1-59 8.43e-03

DUF4040 family protein;


Pssm-ID: 183646 [Multi-domain]  Cd Length: 800  Bit Score: 36.66  E-value: 8.43e-03
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|....*....
gi 344190019   1 LFMCAGSMIHNlSDSQDIRFMGSIVNFMPLTSVCFNVSSLSLCGIPFLAGFYSSDLILE 59
Cdd:PRK12646 356 LFMGVGIIDHE-AGTRDIRILSGMRQLFPKMNLVMTIAALSMAGVPFLNGFLSKEMFLD 413
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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