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Conserved domains on  [gi|344190017|gb|AEM97831|]
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NADH dehydrogenase 5, partial (mitochondrion) [Arcyptera fusca]

Protein Classification

NADH dehydrogenase subunit 5( domain architecture ID 11475935)

NADH dehydrogenase subunit 5 (ND5/NADH5) is the core subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I) that functions in the transfer of electrons from NADH to the respiratory chain; the immediate electron acceptor for the enzyme is believed to be ubiquinone

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
ND5 MTH00165
NADH dehydrogenase subunit 5; Provisional
 1-213 2.03e-72

NADH dehydrogenase subunit 5; Provisional


:

Pssm-ID: 214444 [Multi-domain]  Cd Length: 573  Bit Score: 229.64  E-value: 2.03e-72
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 344190017   1 FMCAGSMIHNLNDSQDIRFMGSIVNFMPLTSICFNVSSLSLCGMPFLAGFYSKDLILEMVCLSWINCFIFFLYFLSTGLT 80
Cdd:MTH00165 309 FLCAGSIIHNMSNSQDIRFMGGLSNFMPLTSSCFNISNLSLCGFPFLSGFYSKDLILEMVSMSNLNFFIFFLFFFSTGLT 388

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 344190017  81 ASYSFRLFYYSMSGDNNYYSSFSFYDKGYYISFSMLSLLFVAVFGGSLLSWLIFPIPNMIVLPYYLKFLTILVVILGSYL 160
Cdd:MTH00165 389 VSYSFRLIYYSMSGDFNLKSLNNLSDESKFMLKSMILLLFMSIFGGSMLSWLIFPEPYMICLPFYLKLLTLFVILLGGWL 468

                        170       180       190       200       210
                 ....*....|....*....|....*....|....*....|....*....|...
gi 344190017 161 GYLISNFVFFYNLISLKFLSLVSFAGSMWFMPFLSTNFISYLPLKVGYYSLSV 213
Cdd:MTH00165 469 GYELSLMSLSYNLKSLKNYKLSSFLGSMWFMPFLSTYGISYYPLNLGSLSLKS 521
 
Name Accession Description Interval E-value
ND5 MTH00165
NADH dehydrogenase subunit 5; Provisional
 1-213 2.03e-72

NADH dehydrogenase subunit 5; Provisional


Pssm-ID: 214444 [Multi-domain]  Cd Length: 573  Bit Score: 229.64  E-value: 2.03e-72
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 344190017   1 FMCAGSMIHNLNDSQDIRFMGSIVNFMPLTSICFNVSSLSLCGMPFLAGFYSKDLILEMVCLSWINCFIFFLYFLSTGLT 80
Cdd:MTH00165 309 FLCAGSIIHNMSNSQDIRFMGGLSNFMPLTSSCFNISNLSLCGFPFLSGFYSKDLILEMVSMSNLNFFIFFLFFFSTGLT 388

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 344190017  81 ASYSFRLFYYSMSGDNNYYSSFSFYDKGYYISFSMLSLLFVAVFGGSLLSWLIFPIPNMIVLPYYLKFLTILVVILGSYL 160
Cdd:MTH00165 389 VSYSFRLIYYSMSGDFNLKSLNNLSDESKFMLKSMILLLFMSIFGGSMLSWLIFPEPYMICLPFYLKLLTLFVILLGGWL 468

                        170       180       190       200       210
                 ....*....|....*....|....*....|....*....|....*....|...
gi 344190017 161 GYLISNFVFFYNLISLKFLSLVSFAGSMWFMPFLSTNFISYLPLKVGYYSLSV 213
Cdd:MTH00165 469 GYELSLMSLSYNLKSLKNYKLSSFLGSMWFMPFLSTYGISYYPLNLGSLSLKS 521
NADH5_C pfam06455
NADH dehydrogenase subunit 5 C-terminus; This family represents the C-terminal region of ...
 83-212 1.14e-26

NADH dehydrogenase subunit 5 C-terminus; This family represents the C-terminal region of several NADH dehydrogenase subunit 5 proteins and is found in conjunction with pfam00361 and pfam00662.


Pssm-ID: 368917 [Multi-domain]  Cd Length: 181  Bit Score: 100.70  E-value: 1.14e-26
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 344190017   83 YSFRLFYYSMSGDNNYYSSFSFYDKGYYISFSMLSLLFVAVFGGSLLSWLIFPIPNMIVLPYYLKFLTILVVILGSYLGY 162
Cdd:pfam06455   1 YSFRLIYYVMTGSPRFSSLSPINENNPIMINPIKRLAIGSIIGGSLLSWLIFPKPPMMTMPLYLKLLALLVTILGLLLGL 80

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|
gi 344190017  163 LISNFVFFYNLISLKFlSLVSFAGSMWFMPFLSTNFISYLPLKVGYYSLS 212
Cdd:pfam06455  81 ELSNLSNKQLKKSLNF-NLHSFSGSMWFFPNLSHRLIPKLSLKLGQKLAK 129
NuoL COG1009
Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ ...
 1-164 1.45e-19

Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ antiporter, MnhA subunit [Energy production and conversion]; Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ antiporter, MnhA subunit is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440633 [Multi-domain]  Cd Length: 608  Bit Score: 85.97  E-value: 1.45e-19
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 344190017   1 FMCAGSMIHNLNdSQDIRFMGSIVNFMPLTSICFNVSSLSLCGMPFLAGFYSKDLILE-MVCLSWINCFIFFLYFLSTGL 79
Cdd:COG1009  341 FLGAGSVIHATG-TRDIRKMGGLRKKMPITAITFLIGALSLAGIPPFAGFFSKEAILEaALEAGGLGPLLLAVALLGAFL 419

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 344190017  80 TASYSFRLFYYSMSGDNNYYSSFSFYDKGYYISFSMLSLLFVAVFGGSLLSWL---------IFPIPNMIVLPYYLKFLT 150
Cdd:COG1009  420 TAFYSFRLFFLVFFGKPRPKTPKHPHESPWLMTLPLVVLAVLSLVLGLLLPGLlegllapaaVLGGELHLAHGLLLNALP 499

                        170
                 ....*....|....
gi 344190017 151 ILVVILGSYLGYLI 164
Cdd:COG1009  500 LLLSLLGIALGYLL 513
 
Name Accession Description Interval E-value
ND5 MTH00165
NADH dehydrogenase subunit 5; Provisional
 1-213 2.03e-72

NADH dehydrogenase subunit 5; Provisional


Pssm-ID: 214444 [Multi-domain]  Cd Length: 573  Bit Score: 229.64  E-value: 2.03e-72
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 344190017   1 FMCAGSMIHNLNDSQDIRFMGSIVNFMPLTSICFNVSSLSLCGMPFLAGFYSKDLILEMVCLSWINCFIFFLYFLSTGLT 80
Cdd:MTH00165 309 FLCAGSIIHNMSNSQDIRFMGGLSNFMPLTSSCFNISNLSLCGFPFLSGFYSKDLILEMVSMSNLNFFIFFLFFFSTGLT 388

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 344190017  81 ASYSFRLFYYSMSGDNNYYSSFSFYDKGYYISFSMLSLLFVAVFGGSLLSWLIFPIPNMIVLPYYLKFLTILVVILGSYL 160
Cdd:MTH00165 389 VSYSFRLIYYSMSGDFNLKSLNNLSDESKFMLKSMILLLFMSIFGGSMLSWLIFPEPYMICLPFYLKLLTLFVILLGGWL 468

                        170       180       190       200       210
                 ....*....|....*....|....*....|....*....|....*....|...
gi 344190017 161 GYLISNFVFFYNLISLKFLSLVSFAGSMWFMPFLSTNFISYLPLKVGYYSLSV 213
Cdd:MTH00165 469 GYELSLMSLSYNLKSLKNYKLSSFLGSMWFMPFLSTYGISYYPLNLGSLSLKS 521
ND5 MTH00209
NADH dehydrogenase subunit 5; Provisional
 1-206 2.03e-42

NADH dehydrogenase subunit 5; Provisional


Pssm-ID: 177252 [Multi-domain]  Cd Length: 564  Bit Score: 150.18  E-value: 2.03e-42
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 344190017   1 FMCAGSMIHNLNDSQDIRFMGSIVNFMPLTSICFNVSSLSLCGMPFLAGFYSKDLILEMVCLSWINCFIFFLYFLSTGLT 80
Cdd:MTH00209 305 FICAGNIIHSHGHSQDIRMVGNLWYQMPITSICLNIANLSLCGIPFLAGFYSKDLILESMLESNMPIMTLILMFLSTSLT 384

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 344190017  81 ASYSFRLFYYSMSGDNNYYSSFSFYDKGYYISFSMLSLLFVAVFGGSLLSWLIFPIPNMIVLPYYLKFLTILVVILGSYL 160
Cdd:MTH00209 385 AAYSMRLSYFSLWGPNSSKSLNSSFDQNKLNLKPMLVLTLGSITGGSVMSWVMVPSVNSVVLPWFLKLLPIMLILFGVLL 464

                        170       180       190       200
                 ....*....|....*....|....*....|....*....|....*.
gi 344190017 161 GYLISNFVFFynliSLKFLSLVSFAGSMWFMPFLSTNFISYLPLKV 206
Cdd:MTH00209 465 MYMVLKKNFF----LIKGYKVNYFLSQMWFLPDLSSQPVNKFTMKL 506
ND5 MTH00207
NADH dehydrogenase subunit 5; Provisional
 1-212 6.98e-40

NADH dehydrogenase subunit 5; Provisional


Pssm-ID: 164753 [Multi-domain]  Cd Length: 572  Bit Score: 143.37  E-value: 6.98e-40
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 344190017   1 FMCAGSMIHNLNDSQDIRFMGSIVNFMPLTSICFNVSSLSLCGMPFLAGFYSKDLILEMVCLSWINCFIFFLYFLSTGLT 80
Cdd:MTH00207 309 FVCAGSLIHSHHHSQDLRTMGNLTNQMPLTTSCLLIANLALCGSPFLSGFYSKDLILESSLFYPHNSLMILMIFLATALT 388

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 344190017  81 ASYSFRLFYYSMSGDNNYYSSFSFYDKGYYISFSMLSLLFVAVFGGSLLSWLIFPIPNMIVLPYYLKFLTILVVILGSYL 160
Cdd:MTH00207 389 AAYSTRFTLAVLWSPNSSSPYHHLEDEDKSLTTPMLLLTLGAITSGSALNWWLPTPQEEPILPLQYKLLPLLVVTLGALL 468

                        170       180       190       200       210
                 ....*....|....*....|....*....|....*....|....*....|..
gi 344190017 161 GYLISNFVFFYNLISLKFLSLVSFAGSMWFMPFLSTNFISYLPLKVGYYSLS 212
Cdd:MTH00207 469 AWLFTTPNITKTPLLINNPLSHFASCLMWFLVPLSSQFIMSTPMNLSHNYLK 520
ND5 MTH00151
NADH dehydrogenase subunit 5; Provisional
 1-213 9.34e-39

NADH dehydrogenase subunit 5; Provisional


Pssm-ID: 214436 [Multi-domain]  Cd Length: 565  Bit Score: 139.98  E-value: 9.34e-39
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 344190017   1 FMCAGSMIHNLNDSQDIRFMGSIVNFMPLTSICFNVSSLSLCGMPFLAGFYSKDLILEMVCLSWINCFIFFLYFLSTGLT 80
Cdd:MTH00151 306 FLCAGSIIHSSSGTQDIRLLGSLFLSLPLTSGCLNISSLSLCGAPFLSGFYSKDLILESSLMSPTSLLMVLLMFVGVGLT 385

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 344190017  81 ASYSFRLFYYSMSGDNNYYSSFSFYDKGYYISFSMLSLLFVAVFGGSLLSWLIFPIPNMIVLPYYLKFLTILVVILGSYL 160
Cdd:MTH00151 386 ALYSARLSFCLVWGSMKSSSLSSKSDEDFYVSLPMLLLSLGALIGGKLLQSLFEGFSEEFFLPSYLKLLIGFVILLGLFL 465

                        170       180       190       200       210
                 ....*....|....*....|....*....|....*....|....*....|...
gi 344190017 161 GYlisnFVFFYNLISLKFLSLVSFAGSMWFMPFLSTNFISYLPLKVGYYSLSV 213
Cdd:MTH00151 466 SF----GFWDSGFSSSKMVKLSFFFSSMWFLSPLSSQPLKSLSLKLSNSSMKS 514
ND5 MTH00004
NADH dehydrogenase subunit 5; Validated
 1-166 7.05e-33

NADH dehydrogenase subunit 5; Validated


Pssm-ID: 214398 [Multi-domain]  Cd Length: 602  Bit Score: 124.12  E-value: 7.05e-33
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 344190017   1 FMCAGSMIHNLNDSQDIRFMGSIVNFMPLTSICFNVSSLSLCGMPFLAGFYSKDLILEMVCLSWINCFIFFLYFLSTGLT 80
Cdd:MTH00004 339 FLCSGSIIHNLNNEQDIRKMGGLQKTLPITSSCLTIGNLALMGTPFLSGFYSKDTIIETLNTSYLNAWALLLTLLATSFT 418

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 344190017  81 ASYSFRLFYYSMSGDNNYYSSFSFYDKGYYISFSMLSLLFVAVFGGSLLSWLIFPI-PNMIVLPYYLKFLTILVVILGSY 159
Cdd:MTH00004 419 AAYSLRMILLVQTGFPRTPPTTPINENTPTIINPITRLALGSILAGLLISSTILPTkTPPMTMPTTTKLAALIVTILGIL 498


                 ....*..
gi 344190017 160 LGYLISN 166
Cdd:MTH00004 499 LALELSN 505
ND5 MTH00211
NADH dehydrogenase subunit 5; Provisional
 1-207 2.39e-32

NADH dehydrogenase subunit 5; Provisional


Pssm-ID: 214459 [Multi-domain]  Cd Length: 597  Bit Score: 122.75  E-value: 2.39e-32
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 344190017   1 FMCAGSMIHNLNDSQDIRFMGSIVNFMPLTSICFNVSSLSLCGMPFLAGFYSKDLILEMVCLSWINCFIFFLYFLSTGLT 80
Cdd:MTH00211 334 FMCSGSIIHGLNNEQDIRKMGGLSKNLPFTSSCLFLGSLALMGFPFLSGFFSKDLILESMNGSYLNAWALLLTLLATSLT 413

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 344190017  81 ASYSFRLFYYSMSGDNNyYSSFSFYDKGYYISFSMLSLLFV-AVFGGSLLSWLIFPIPNMIV-LPYYLKFLTILVVILGS 158
Cdd:MTH00211 414 AAYSFRLIFLSLGGYPR-FLSLSPINENYKLLKNPLKRLALgSILAGFIITSNLPPEKPEILsLPFLLKLMPLLVTIVGL 492

                        170       180       190       200
                 ....*....|....*....|....*....|....*....|....*....
gi 344190017 159 YLGYLISNFvffynLISLKFLSLVSFAGSMWFMPFLSTNFISYLPLKVG 207
Cdd:MTH00211 493 LLGLELVNL-----THKQLKTSTLSFSNMLGYYPPIIHRLLPKLSLKWG 536
ND5 MTH00108
NADH dehydrogenase subunit 5; Provisional
 1-157 2.87e-31

NADH dehydrogenase subunit 5; Provisional


Pssm-ID: 177170 [Multi-domain]  Cd Length: 602  Bit Score: 119.57  E-value: 2.87e-31
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 344190017   1 FMCAGSMIHNLNDSQDIRFMGSIVNFMPLTSICFNVSSLSLCGMPFLAGFYSKDLILEMVCLSWINCFIFFLYFLSTGLT 80
Cdd:MTH00108 340 FMCSGSIIHNLNDEQDIRKMGGLFKTLPFTSTALIIGSLALTGMPFLTGFYSKDLIIEAANTSYTNAWALLITLIATSLT 419

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 344190017  81 ASYSFRLFYYSMSGDNNYYSSFSFYDKGYYISFSMLSLLFVAVFGGSLLSWLIFP--IPNMiVLPYYLKFLTILVVILG 157
Cdd:MTH00108 420 AAYSTRIIFFALLGQPRFPPLITINENNPLLINPIKRLLLGSIFAGFLISNNIPPttIPQM-TMPLYLKLTALAVTILG 497
ND5 MTH00208
NADH dehydrogenase subunit 5; Provisional
 1-202 2.71e-29

NADH dehydrogenase subunit 5; Provisional


Pssm-ID: 177251 [Multi-domain]  Cd Length: 628  Bit Score: 114.30  E-value: 2.71e-29
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 344190017   1 FMCAGSMIHNLNDSQDIRFMGSIVNFMPLTSICFNVSSLSLCGMPFLAGFYSKDLILEMVCLSWINCFIFFLYFLSTGLT 80
Cdd:MTH00208 366 FLCSGSIIHSLNNEQDLRKMGGLSFLLPVTSSCIILGSLALMGTPFLAGFYSKDLILEAGLASISNLLSIILALIATLLT 445

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 344190017  81 ASYSFRLFYYSMSGDNNYYSSFSFYDKGYYISFSMLSLLFVAVFGGSLLSWLIFPIPNmIVLPYYLKFLTILVVILGSYL 160
Cdd:MTH00208 446 AVYSFRIIFFCFLNNPSFSPLSPISEENPNLTNPLLRLAIGTIISGWFFSNFVFNLPP-LTLPLILKSLPLIVTIIGAAF 524

                        170       180       190       200
                 ....*....|....*....|....*....|....*....|..
gi 344190017 161 GYLISNFvFFYNLISLKFLSLVSFAgsmWFMPFLSTNFISYL 202
Cdd:MTH00208 525 SFSFLLS-LSSNPINSNFFSFLSNQ---WFFVNISHSIIISF 562
ND5 MTH00066
NADH dehydrogenase subunit 5; Provisional
 1-167 3.72e-29

NADH dehydrogenase subunit 5; Provisional


Pssm-ID: 214416 [Multi-domain]  Cd Length: 598  Bit Score: 113.85  E-value: 3.72e-29
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 344190017   1 FMCAGSMIHNLNDSQDIRFMGSIVNFMPLTSICFNVSSLSLCGMPFLAGFYSKDLILEMVCLSWINCFIFFLYFLSTGLT 80
Cdd:MTH00066 337 FLCSGSIIHSLNDEQDIRKMGGLQKALPITTSCLTIGSLALTGTPFLAGFFSKDAIIEAMNTSNLNSWALILTLIATSFT 416

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 344190017  81 ASYSFRLFYYSMSGDNNYYSSFSFYDKGYYISFSMLSLLFVAVFGGSLLSWLIFPIPNMIV-LPYYLKFLTILVVILGSY 159
Cdd:MTH00066 417 AVYSFRIIYFSSMKFPRSLPLSPINENNPLIINPIKRLAWGSIIAGLLIIFNILPMKPQILtMPTFMKLAALLVTLLGLL 496


                 ....*...
gi 344190017 160 LGYLISNF 167
Cdd:MTH00066 497 IALDLAKI 504
ND5 MTH00137
NADH dehydrogenase subunit 5; Provisional
 1-92 4.18e-27

NADH dehydrogenase subunit 5; Provisional


Pssm-ID: 214428 [Multi-domain]  Cd Length: 611  Bit Score: 108.00  E-value: 4.18e-27
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 344190017   1 FMCAGSMIHNLNDSQDIRFMGSIVNFMPLTSICFNVSSLSLCGMPFLAGFYSKDLILEMVCLSWINCFIFFLYFLSTGLT 80
Cdd:MTH00137 345 FLCSGSIIHSLNDEQDIRKMGGLHHLTPFTSSCLTIGSLALTGTPFLAGFFSKDAIIEALNTSHLNAWALTLTLIATSFT 424

                         90
                 ....*....|...
gi 344190017  81 ASYSFRL-FYYSM 92
Cdd:MTH00137 425 AVYSLRVvFFVSM 437
NADH5_C pfam06455
NADH dehydrogenase subunit 5 C-terminus; This family represents the C-terminal region of ...
 83-212 1.14e-26

NADH dehydrogenase subunit 5 C-terminus; This family represents the C-terminal region of several NADH dehydrogenase subunit 5 proteins and is found in conjunction with pfam00361 and pfam00662.


Pssm-ID: 368917 [Multi-domain]  Cd Length: 181  Bit Score: 100.70  E-value: 1.14e-26
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 344190017   83 YSFRLFYYSMSGDNNYYSSFSFYDKGYYISFSMLSLLFVAVFGGSLLSWLIFPIPNMIVLPYYLKFLTILVVILGSYLGY 162
Cdd:pfam06455   1 YSFRLIYYVMTGSPRFSSLSPINENNPIMINPIKRLAIGSIIGGSLLSWLIFPKPPMMTMPLYLKLLALLVTILGLLLGL 80

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|
gi 344190017  163 LISNFVFFYNLISLKFlSLVSFAGSMWFMPFLSTNFISYLPLKVGYYSLS 212
Cdd:pfam06455  81 ELSNLSNKQLKKSLNF-NLHSFSGSMWFFPNLSHRLIPKLSLKLGQKLAK 129
ND5 MTH00210
NADH dehydrogenase subunit 5; Provisional
 1-209 5.54e-23

NADH dehydrogenase subunit 5; Provisional


Pssm-ID: 177253 [Multi-domain]  Cd Length: 616  Bit Score: 96.23  E-value: 5.54e-23
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 344190017   1 FMCAGSMIHNLNDSQDIRFMGSIVNFMPLTSICFNVSSLSLCGMPFLAGFYSKDLILEMVCLSWINCFIFFLYFLSTGLT 80
Cdd:MTH00210 341 FLSAGSVIHAVSDEQDMRKMGGLIKSIPFTYVMILIGSLSLMGFPYLTGFYSKDLILELTYDKYYIAFAYWLGSFSALLT 420

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 344190017  81 ASYSFRLFYYSMSGDNNyySSFSFYDKGYYISFSMLSLLFVAVFGGSLLSWLI--FPIPNMI--VLPYYLKFLTILVVIL 156
Cdd:MTH00210 421 AFYSIRLIYLTFITNTN--SKKEVFIGVHESSWNITFPLLLLAFGSIFVGYLGkeVVLSNVIppIVPNSIKMIPLLFSLL 498

                        170       180       190       200       210
                 ....*....|....*....|....*....|....*....|....*....|....*....
gi 344190017 157 GSYLGYLISNFVFFYNLIS------LKFLSLVSFAGSMWFMPFLSTNFISYLPLKVGYY 209
Cdd:MTH00210 499 GALLAFVIYNSMVFLIKISrrgvsiRLYHVIYTFLNSAWQFNYVINHFIVKNIWKFGHL 557
ND5 MTH00020
NADH dehydrogenase subunit 5; Reviewed
 1-179 3.59e-22

NADH dehydrogenase subunit 5; Reviewed


Pssm-ID: 214400 [Multi-domain]  Cd Length: 610  Bit Score: 93.60  E-value: 3.59e-22
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 344190017   1 FMCAGSMIHNLNDSQDIRFMGSIVNFMPLTSICFNVSSLSLCGMPFLAGFYSKDLILEMVCLSWINCFIFFLYFLSTGLT 80
Cdd:MTH00020 340 FLSAGSVIHALSDEQDMRKMGGLISFLPLTYIFFLIGSLSLMGFPYLTGFYSKDLILELAFGQYYLIFAYWLGCFSALLT 419

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 344190017  81 ASYSFRLFYYS-MSGDNNYYSSFSFYDKG-YYISFSMLSLLFVAVFGGSLLSWLIF--------PIPNMI-VLPYYLKFL 149
Cdd:MTH00020 420 AFYSIRLIYLTfLSNTNLKKAVFFHLHEGdWNLLLPLGILALGSIFVGYLAKEMIWsfqitlppIVPLSIkLLPVFLSLG 499

                        170       180       190
                 ....*....|....*....|....*....|.
gi 344190017 150 -TILVVILGSYLGYLISNFVFFYNLISLKFL 179
Cdd:MTH00020 500 gIGLVIILYFYSSKTFRVPFSFIGRNSYTFL 530
PRK06590 PRK06590
NADH:ubiquinone oxidoreductase subunit L; Reviewed
 1-164 1.38e-20

NADH:ubiquinone oxidoreductase subunit L; Reviewed


Pssm-ID: 235836 [Multi-domain]  Cd Length: 624  Bit Score: 89.06  E-value: 1.38e-20
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 344190017   1 FMCAGSMIHNLNDSQDIRFMGSIVNFMPLTSICFNVSSLSLCGMPFLAGFYSKDLILEmVCLSWINCFIFFLYFLSTGLT 80
Cdd:PRK06590 347 FLGAGSVIHAMHHEQDIRKMGGLRKKMPVTYATFLIGTLALIGIPPFAGFFSKDEILE-AAFANGHINLFVAGLVGAFLT 425

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 344190017  81 ASYSFRLFYYSMSGDNNYYsSFSFYDKGYYISFSMLSLLFVAVFGG-----SLLSWLIFP-----IPNMIVLPYYLKFLT 150
Cdd:PRK06590 426 AFYSFRLIFLVFHGKEKEK-IHHPHESPAVMTLPLIVLAVLSVFAGalivpPFLGVLPLTtelahGEAEHHLPVWVALLP 504

                        170
                 ....*....|....
gi 344190017 151 ILVVILGSYLGYLI 164
Cdd:PRK06590 505 LVVALAGIALAWLL 518
NuoL COG1009
Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ ...
 1-164 1.45e-19

Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ antiporter, MnhA subunit [Energy production and conversion]; Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ antiporter, MnhA subunit is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440633 [Multi-domain]  Cd Length: 608  Bit Score: 85.97  E-value: 1.45e-19
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 344190017   1 FMCAGSMIHNLNdSQDIRFMGSIVNFMPLTSICFNVSSLSLCGMPFLAGFYSKDLILE-MVCLSWINCFIFFLYFLSTGL 79
Cdd:COG1009  341 FLGAGSVIHATG-TRDIRKMGGLRKKMPITAITFLIGALSLAGIPPFAGFFSKEAILEaALEAGGLGPLLLAVALLGAFL 419

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 344190017  80 TASYSFRLFYYSMSGDNNYYSSFSFYDKGYYISFSMLSLLFVAVFGGSLLSWL---------IFPIPNMIVLPYYLKFLT 150
Cdd:COG1009  420 TAFYSFRLFFLVFFGKPRPKTPKHPHESPWLMTLPLVVLAVLSLVLGLLLPGLlegllapaaVLGGELHLAHGLLLNALP 499

                        170
                 ....*....|....
gi 344190017 151 ILVVILGSYLGYLI 164
Cdd:COG1009  500 LLLSLLGIALGYLL 513
PRK07376 PRK07376
NADH-quinone oxidoreductase subunit L;
1-95 2.29e-16

NADH-quinone oxidoreductase subunit L;


Pssm-ID: 236005 [Multi-domain]  Cd Length: 673  Bit Score: 76.99  E-value: 2.29e-16
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 344190017   1 FMCAGSMIHNLND--------SQDIRFMGSIVNFMPLTSICFNVSSLSLCGMPFLAGFYSKDLILEMVCLSwiNCFIFFL 72
Cdd:PRK07376 357 FLGSGSVIHGMEEvvghdpvlAQDMRLMGGLRKYMPITAITFLIGCLAISGIPPFAGFWSKDEILGAAFEA--NPALWFV 434

                         90       100
                 ....*....|....*....|...
gi 344190017  73 YFLSTGLTASYSFRLFYYSMSGD 95
Cdd:PRK07376 435 GFLTAGMTAFYMFRMYFLTFEGE 457
ndhF CHL00025
NADH dehydrogenase subunit 5
 1-88 3.63e-10

NADH dehydrogenase subunit 5


Pssm-ID: 214338 [Multi-domain]  Cd Length: 741  Bit Score: 58.75  E-value: 3.63e-10
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 344190017   1 FMCAGSMIHNL--------NDSQDIRFMGSIVNFMPLTSICFNVSSLSLCGMPFLAGFYSKDLILEMvclSWINCFIF-F 71
Cdd:CHL00025 357 FLGSGSVIHSMepivgyspDKSQNMVLMGGLRKYMPITKTTFLLGTLSLCGIPPLACFWSKDEILND---SWLYSPIFaI 433

                         90
                 ....*....|....*..
gi 344190017  72 LYFLSTGLTASYSFRLF 88
Cdd:CHL00025 434 IAWSTAGLTAFYMFRIY 450
Proton_antipo_M pfam00361
Proton-conducting membrane transporter; This is a family of membrane transporters that ...
 1-76 7.02e-10

Proton-conducting membrane transporter; This is a family of membrane transporters that inlcudes some 7 of potentially 14-16 TM regions. In many instances the family forms part of complex I that catalyzes the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane, and in this context is a combination predominantly of subunits 2, 4, 5, 14, L, M and N. In many bacterial species these proteins are probable stand-alone transporters not coupled with oxidoreduction. The family in total represents homologs across the phyla.


Pssm-ID: 425636 [Multi-domain]  Cd Length: 291  Bit Score: 57.32  E-value: 7.02e-10
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 344190017    1 FMCAGSMIHNLNDSQDIRFMGSIVNFMPLTSICFNVSSLSLCGMPFLAGFYSKDLILEMVCLSWINCFIFFLYFLS 76
Cdd:pfam00361 216 FLCAGSVIYRRVHTRNIRDYGGLAKTMPILALVFLVAMLSLAGLPPTAGFLGKFLILAAAVAASWIFLVLAGVVGS 291
ND5 MTH00032
NADH dehydrogenase subunit 5; Provisional
 1-59 2.14e-09

NADH dehydrogenase subunit 5; Provisional


Pssm-ID: 214407 [Multi-domain]  Cd Length: 669  Bit Score: 56.51  E-value: 2.14e-09
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|
gi 344190017   1 FMCAGSMIHNLN-DSQDIRFMGSIVNFMPLTSICFNVSSLSLCGMPFLAGFYSKDLILEM 59
Cdd:MTH00032 356 FLSAGSVIHSTTvDEQDMRKMGGLIHSIPFTYTMMLIGSFSIMGLPYLTGFYSKDLILEL 415
HyfB COG0651
Formate hydrogenlyase subunit 3/Multisubunit Na+/H+ antiporter, MnhD subunit [Energy ...
 1-90 7.57e-07

Formate hydrogenlyase subunit 3/Multisubunit Na+/H+ antiporter, MnhD subunit [Energy production and conversion, Inorganic ion transport and metabolism];


Pssm-ID: 440416 [Multi-domain]  Cd Length: 430  Bit Score: 48.60  E-value: 7.57e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 344190017   1 FMCAGSMIHNLNdSQDIRFMGSIVNFMPLTSICFNVSSLSLCGMPFLAGFYSKDLILEMVcLSWINCFIFFLYFLSTGLT 80
Cdd:COG0651  341 FLAAGAIERATG-TRDLDKLGGLGKRMPLTAAAFLIGALALAGLPPLSGFVSKWLLLQAA-LEAGAWLLAAVLLLSSLLT 418

                         90
                 ....*....|
gi 344190017  81 ASYSFRLFYY 90
Cdd:COG0651  419 LAYFVRIFGR 428
ND5 MTH00095
NADH dehydrogenase subunit 5; Provisional
 1-209 2.35e-06

NADH dehydrogenase subunit 5; Provisional


Pssm-ID: 177158 [Multi-domain]  Cd Length: 527  Bit Score: 47.22  E-value: 2.35e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 344190017   1 FMCAGSMIHNLNDSQDIRFMGSIVNFMPLTSICFNVSSLSLCGMPFLAGFYSKDLILEMVCLSWINCFIFFLYFLSTGLT 80
Cdd:MTH00095 293 FMQVGYLIHSNFGQQDGRNYSNNGNLPMFIQLQLLVTLFCLCGLMFTSGMVSKELILELFFFNNYMIFFSLMFFFSVFLT 372

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 344190017  81 ASYSFRLFyysMSGDNNYYSSFSFYDKGYYISFSMLSLLFVAVFggsLLSWLIFPIPNMIVLPYYLKFLTILVVILgsyL 160
Cdd:MTH00095 373 FGYSYRLW---KSFFLSFSKVVNVYSSSVLMNFLSLMLVFFSVF---FLWWLNFNLLNLPSLFLYLDFYVPLFYLF---M 443

                        170       180       190       200
                 ....*....|....*....|....*....|....*....|....*....
gi 344190017 161 GYLISNFVFFYNLISLKFLSLVSFAGSMWFMPFLSTNFISYLPLKVGYY 209
Cdd:MTH00095 444 IMLFSFFFFKLLFKELKYKFFVDYFAKNVIYKLKNLKFFDLFLNKFGYK 492
PRK07390 PRK07390
NAD(P)H-quinone oxidoreductase subunit F; Validated
 1-81 1.67e-05

NAD(P)H-quinone oxidoreductase subunit F; Validated


Pssm-ID: 236008 [Multi-domain]  Cd Length: 613  Bit Score: 44.90  E-value: 1.67e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 344190017   1 FMCAGSMIHNlNDSQDIRFMGSIVNFMPLTSICFNVSSLSLCGMPFLAGFYSkdlILEMVCLSWINCFIFFLYFLST-GL 79
Cdd:PRK07390 350 FMSVGSIILT-TITQDLTELGGLWSRMPATTLAFLVGSAGLVALLPLGGFWA---LLRLADGLWAVSPWLVGVLLLVnAL 425


                 ..
gi 344190017  80 TA 81
Cdd:PRK07390 426 TA 427
PRK12667 PRK12667
putative monovalent cation/H+ antiporter subunit D; Reviewed
 1-89 1.31e-04

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 237167 [Multi-domain]  Cd Length: 520  Bit Score: 42.27  E-value: 1.31e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 344190017   1 FMCAGSMIHNLNdSQDIRFMGSIVNFMPLTSICFNVSSLSLCGMPFLAGFYSKDLILEMVCLSWINCFIFFLyFLSTGLT 80
Cdd:PRK12667 364 FLASGVFIHAAG-TRDIDELAGLGRKMPIASFAFLIGALSLVGIPPLNGFFSKLLLFNALLESGFYLPALVL-LIASAIS 441


                 ....*....
gi 344190017  81 ASYSFRLFY 89
Cdd:PRK12667 442 LVGYFRAWY 450
PRK08667 PRK08667
hydrogenase membrane subunit; Validated
 1-58 7.19e-04

hydrogenase membrane subunit; Validated


Pssm-ID: 236331 [Multi-domain]  Cd Length: 644  Bit Score: 40.10  E-value: 7.19e-04
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|....*...
gi 344190017   1 FMCAGSMIHNLNDsQDIRFMGSIVNFMPLTSICFNVSSLSLCGMPFLAGFYSKDLILE 58
Cdd:PRK08667 350 FLTAGSVVHATGT-RNIEKMGGLVKLMPYTSALFLVGAVSIAALPPFNGFASELLLYE 406
PRK12650 PRK12650
DUF4040 family protein;
1-87 2.03e-03

DUF4040 family protein;


Pssm-ID: 237158 [Multi-domain]  Cd Length: 962  Bit Score: 38.49  E-value: 2.03e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 344190017   1 FMCAGSMIHNLNdSQDIRFMGSIVNFMPLTSICFNVSSLSLCGMPFLAGFYSKDLILEMVCLSWINCFIFFLYFLSTGLT 80
Cdd:PRK12650 341 FMLIGVVDHQAG-TRDIRRLGSLWRRMPFTFVSVTIAALSMAAVPPLFGFVSKEGMLTAFLEAPGGNAGVVLLLVGAALG 419

                         90
                 ....*....|.
gi 344190017  81 A----SYSFRL 87
Cdd:PRK12650 420 AvftfAYSARL 430
NuoM COG1008
NADH:ubiquinone oxidoreductase subunit 4 (chain M) [Energy production and conversion]; NADH: ...
 1-88 2.22e-03

NADH:ubiquinone oxidoreductase subunit 4 (chain M) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 4 (chain M) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440632 [Multi-domain]  Cd Length: 488  Bit Score: 38.52  E-value: 2.22e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 344190017   1 FMCAGSMIHNLNdSQDIRFMGSIVNFMPLTSICFNVSSLSLCGMPFLAGFYSKDLILEMVCLSWIncFIFFLYFLSTGLT 80
Cdd:COG1008  344 FLLVGVLYDRTH-TRDIADLGGLAKRMPVLAALFLLAALASLGLPGTSGFVGEFLVLLGAFQVNP--WLAILAALGLILT 420


                 ....*...
gi 344190017  81 ASYSFRLF 88
Cdd:COG1008  421 AAYLLWMY 428
PRK12668 PRK12668
Na(+)/H(+) antiporter subunit D;
1-57 2.38e-03

Na(+)/H(+) antiporter subunit D;


Pssm-ID: 237168 [Multi-domain]  Cd Length: 581  Bit Score: 38.34  E-value: 2.38e-03
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|....*..
gi 344190017   1 FMCAGSMIHNLNDSqDIRFMGSIVNFMPLTSICFNVSSLSLCGMPFLAGFYSKDLIL 57
Cdd:PRK12668 309 FMSAGAVLYRTGTE-KLTELGGLYRSMPLTALFCLVGALSISAFPLFSGFVSKSMII 364
PRK08375 PRK08375
putative monovalent cation/H+ antiporter subunit D; Reviewed
 1-90 3.20e-03

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 236251 [Multi-domain]  Cd Length: 487  Bit Score: 37.94  E-value: 3.20e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 344190017   1 FMCAGSMIHNLNdSQDIRFMGSIVNFMPLTSICFNVSSLSLCGMPFLAGFYSKDLILEMVCLSWINCFIFFLYfLSTGLT 80
Cdd:PRK08375 340 FLAAGAIEVTYG-TRRLSELSGLGRRMPLTAAAFAVASLSLIGVPPTSGFVSKWYLVVGAVEAGQWLVLAVLL-ASSLLA 417

                         90
                 ....*....|
gi 344190017  81 ASYSFRLFYY 90
Cdd:PRK08375 418 LLYFLRIWYR 427
PRK08376 PRK08376
putative monovalent cation/H+ antiporter subunit D; Reviewed
 1-60 6.36e-03

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 236252 [Multi-domain]  Cd Length: 521  Bit Score: 37.00  E-value: 6.36e-03
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|
gi 344190017   1 FMCAGSMIHNLNdSQDIRFMGSIVNFMPLTSICFNVSSLSLCGMPFLAGFYSKDLILEMV 60
Cdd:PRK08376 368 FLTAGAVIYETG-TRNLNELGGLARTMPKTTIAFLIGAAAIVGLPPFNGFASKWLIYESS 426
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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