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Conserved domains on  [gi|343467489|gb|AEM43214|]
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cytochrome b, partial (mitochondrion) [Lygisaurus curtus]

Protein Classification

cytochrome b family protein( domain architecture ID 581032)

cytochrome b family protein such as formate dehydrogenase subunit gamma or cytochrome b, a component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex), a respiratory chain that generates an electrochemical potential coupled to ATP synthesis.

Gene Ontology:  GO:0046872|GO:0016491

Graphical summary

 Zoom to residue level

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List of domain hits

 Name Accession Description Interval E-value
Cytochrome_b_N super family cl23723
Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit ...
 4-109 1.54e-79

Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit mitochondrial respiratory enzyme. Cytochrome b spans the mitochondrial membrane with 8 transmembrane helices (A-H) in eukaryotes. In plants and cyanobacteria, cytochrome b6 is analogous to eukaryote cytochrome b, containing two chains: helices A-D are encoded by the petB gene and helices E-H are encoded by the petD gene in these organisms. Cytochrome b/b6 contains two bound hemes and two ubiquinol/ubiquinone binding sites. The C-terminal portion of cytochrome b is described in a separate CD.


The actual alignment was detected with superfamily member MTH00119:

Pssm-ID: 474033 [Multi-domain]  Cd Length: 380  Bit Score: 237.88  E-value: 1.54e-79
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 343467489   4 PSNISAWWNFGSLLGICLIMQVLTGLFLAMHYTADISSAFSSIAHICRDVQYGWFIRNMHANGASMFFICIYLHIGRGLY 83
Cdd:MTH00119  25 PSNISAWWNFGSLLGLCLITQILTGLFLAMHYTADISLAFSSVAHICRDVQYGWLIRNLHANGASMFFICIYLHIGRGLY 104

                         90       100
                 ....*....|....*....|....*.
gi 343467489  84 YGSYMYKETWNIGVVLLLLVMATAFV 109
Cdd:MTH00119 105 YGSYLYKETWNTGVILLLLLMATAFV 130
 
Name Accession Description Interval E-value
CYTB MTH00119
cytochrome b; Provisional
 4-109 1.54e-79

cytochrome b; Provisional


Pssm-ID: 214425 [Multi-domain]  Cd Length: 380  Bit Score: 237.88  E-value: 1.54e-79
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 343467489   4 PSNISAWWNFGSLLGICLIMQVLTGLFLAMHYTADISSAFSSIAHICRDVQYGWFIRNMHANGASMFFICIYLHIGRGLY 83
Cdd:MTH00119  25 PSNISAWWNFGSLLGLCLITQILTGLFLAMHYTADISLAFSSVAHICRDVQYGWLIRNLHANGASMFFICIYLHIGRGLY 104

                         90       100
                 ....*....|....*....|....*.
gi 343467489  84 YGSYMYKETWNIGVVLLLLVMATAFV 109
Cdd:MTH00119 105 YGSYLYKETWNTGVILLLLLMATAFV 130
Cytochrome_b_N cd00284
Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit ...
 4-109 8.05e-45

Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit mitochondrial respiratory enzyme. Cytochrome b spans the mitochondrial membrane with 8 transmembrane helices (A-H) in eukaryotes. In plants and cyanobacteria, cytochrome b6 is analogous to eukaryote cytochrome b, containing two chains: helices A-D are encoded by the petB gene and helices E-H are encoded by the petD gene in these organisms. Cytochrome b/b6 contains two bound hemes and two ubiquinol/ubiquinone binding sites. The C-terminal portion of cytochrome b is described in a separate CD.


Pssm-ID: 238176  Cd Length: 200  Bit Score: 143.66  E-value: 8.05e-45
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 343467489   4 PSNISAWWNFGSLLGICLIMQVLTGLFLAMHYTADISSAFSSIAHICRDVQYGWFIRNMHANGASMFFICIYLHIGRGLY 83
Cdd:cd00284   16 PSNISYWWNFGSLLGTCLVIQILTGVFLAMHYTPDVTLAFSSVQYIMRDVNFGWLIRSLHANGASMFFLMLYLHIFRGLY 95

                         90       100
                 ....*....|....*....|....*...
gi 343467489  84 YGSYM--YKETWNIGVVLLLLVMATAFV 109
Cdd:cd00284   96 YGSYKkpRELTWVIGVILLLLTMATAFM 123
Cytochrome_B pfam00033
Cytochrome b/b6/petB;
4-109 7.18e-43

Cytochrome b/b6/petB;


Pssm-ID: 306530  Cd Length: 189  Bit Score: 138.28  E-value: 7.18e-43
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 343467489    4 PSNISAWWNFGSLLGICLIMQVLTGLFLAMHYTADISSAFSSIAHICRDVQYGWFIRNMHANGASMFFICIYLHIGRGLY 83
Cdd:pfam00033   7 PSNLSIWYNFGSLLGLCLAVQILTGVFLAFYYTPDVTLAFLSVQYIMRDVNFGWLIRSVHANGASMFFLMLYLHIFRGLY 86

                          90       100
                  ....*....|....*....|....*...
gi 343467489   84 YG--SYMYKETWNIGVVLLLLVMATAFV 109
Cdd:pfam00033  87 YGgfSYPRELTWVIGVILLVLTMSTAFI 114
QcrB/PetB COG1290
Cytochrome b subunit of the bc complex [Energy production and conversion];
1-108 2.96e-41

Cytochrome b subunit of the bc complex [Energy production and conversion];


Pssm-ID: 440901 [Multi-domain]  Cd Length: 393  Bit Score: 139.54  E-value: 2.96e-41
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 343467489   1 KKLPSNISAWWNFGSLLGICLIMQVLTGLFLAMHYTADISSAFSSIAHICRDVQYGWFIRNMHANGASMFFICIYLHIGR 80
Cdd:COG1290   30 YPFPKNWNFSYWFGELALYSFVIQILTGIFLTMYYKPSASEAFASVEYIMRDVPGGWLIRYMHHWGASLFFAAVYLHMFR 109

                         90       100       110
                 ....*....|....*....|....*....|
gi 343467489  81 GLYYGSYMY-KE-TWNIGVVLLLLVMATAF 108
Cdd:COG1290  110 GFFYGAYKKpRElNWIIGVLLLLLTMAEAF 139
 
Name Accession Description Interval E-value
CYTB MTH00119
cytochrome b; Provisional
 4-109 1.54e-79

cytochrome b; Provisional


Pssm-ID: 214425 [Multi-domain]  Cd Length: 380  Bit Score: 237.88  E-value: 1.54e-79
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 343467489   4 PSNISAWWNFGSLLGICLIMQVLTGLFLAMHYTADISSAFSSIAHICRDVQYGWFIRNMHANGASMFFICIYLHIGRGLY 83
Cdd:MTH00119  25 PSNISAWWNFGSLLGLCLITQILTGLFLAMHYTADISLAFSSVAHICRDVQYGWLIRNLHANGASMFFICIYLHIGRGLY 104

                         90       100
                 ....*....|....*....|....*.
gi 343467489  84 YGSYMYKETWNIGVVLLLLVMATAFV 109
Cdd:MTH00119 105 YGSYLYKETWNTGVILLLLLMATAFV 130
CYTB MTH00131
cytochrome b; Provisional
 4-109 2.03e-78

cytochrome b; Provisional


Pssm-ID: 177189 [Multi-domain]  Cd Length: 380  Bit Score: 234.93  E-value: 2.03e-78
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 343467489   4 PSNISAWWNFGSLLGICLIMQVLTGLFLAMHYTADISSAFSSIAHICRDVQYGWFIRNMHANGASMFFICIYLHIGRGLY 83
Cdd:MTH00131  24 PSNISVWWNFGSLLGLCLITQILTGLFLAMHYTSDISTAFSSVAHICRDVNYGWLIRNLHANGASFFFICIYLHIGRGLY 103

                         90       100
                 ....*....|....*....|....*.
gi 343467489  84 YGSYMYKETWNIGVVLLLLVMATAFV 109
Cdd:MTH00131 104 YGSYLYKETWNIGVVLLLLVMMTAFV 129
CYTB MTH00074
cytochrome b; Provisional
 4-109 1.07e-75

cytochrome b; Provisional


Pssm-ID: 177145 [Multi-domain]  Cd Length: 380  Bit Score: 228.03  E-value: 1.07e-75
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 343467489   4 PSNISAWWNFGSLLGICLIMQVLTGLFLAMHYTADISSAFSSIAHICRDVQYGWFIRNMHANGASMFFICIYLHIGRGLY 83
Cdd:MTH00074  25 PSNLSSLWNFGSLLGVCLIAQIITGLFLAMHYTADTSSAFSSVAHICRDVNYGWLMRNIHANGASFFFICIYLHIGRGLY 104

                         90       100
                 ....*....|....*....|....*.
gi 343467489  84 YGSYMYKETWNIGVVLLLLVMATAFV 109
Cdd:MTH00074 105 YGSYMYKETWNIGVILLFLVMATAFV 130
CYTB MTH00100
cytochrome b; Provisional
 4-109 1.23e-74

cytochrome b; Provisional


Pssm-ID: 177162 [Multi-domain]  Cd Length: 379  Bit Score: 225.29  E-value: 1.23e-74
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 343467489   4 PSNISAWWNFGSLLGICLIMQVLTGLFLAMHYTADISSAFSSIAHICRDVQYGWFIRNMHANGASMFFICIYLHIGRGLY 83
Cdd:MTH00100  24 PSNISSWWNFGSLLGICLILQILTGLFLAMHYTSDTTTAFSSVAHICRDVNYGWIIRYLHANGASMFFICLFLHVGRGLY 103

                         90       100
                 ....*....|....*....|....*.
gi 343467489  84 YGSYMYKETWNIGVVLLLLVMATAFV 109
Cdd:MTH00100 104 YGSYLFLETWNIGIILLFTVMATAFM 129
CYTB MTH00191
cytochrome b; Provisional
 4-109 6.75e-71

cytochrome b; Provisional


Pssm-ID: 177239 [Multi-domain]  Cd Length: 365  Bit Score: 215.16  E-value: 6.75e-71
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 343467489   4 PSNISAWWNFGSLLGICLIMQVLTGLFLAMHYTADISSAFSSIAHICRDVQYGWFIRNMHANGASMFFICIYLHIGRGLY 83
Cdd:MTH00191  21 PSNISYWWNFGSLLGLCLIIQILTGLFLAMHYTADISLAFSSVVHICRDVNYGWLLRNIHANGASFFFICIYLHIGRGLY 100

                         90       100
                 ....*....|....*....|....*.
gi 343467489  84 YGSYMYKETWNIGVVLLLLVMATAFV 109
Cdd:MTH00191 101 YGSYLNKETWNVGVILLILSMATAFL 126
CYTB MTH00156
cytochrome b; Provisional
 4-108 3.45e-69

cytochrome b; Provisional


Pssm-ID: 214440 [Multi-domain]  Cd Length: 356  Bit Score: 210.79  E-value: 3.45e-69
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 343467489   4 PSNISAWWNFGSLLGICLIMQVLTGLFLAMHYTADISSAFSSIAHICRDVQYGWFIRNMHANGASMFFICIYLHIGRGLY 83
Cdd:MTH00156  14 PSNISYWWNFGSLLGLCLMIQIITGLFLAMHYTADIELAFSSVIHICRDVNYGWLLRTLHANGASFFFICIYLHIGRGIY 93

                         90       100
                 ....*....|....*....|....*
gi 343467489  84 YGSYMYKETWNIGVVLLLLVMATAF 108
Cdd:MTH00156  94 YGSYKLKHTWMSGVIILFLVMATAF 118
CYTB MTH00034
cytochrome b; Validated
 3-109 3.35e-66

cytochrome b; Validated


Pssm-ID: 177109 [Multi-domain]  Cd Length: 379  Bit Score: 203.78  E-value: 3.35e-66
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 343467489   3 LPSNISAWWNFGSLLGICLIMQVLTGLFLAMHYTADISSAFSSIAHICRDVQYGWFIRNMHANGASMFFICIYLHIGRGL 82
Cdd:MTH00034  23 SPSNLSIWWNFGSLLGLCLIIQIITGIFLAMHYTADISLAFSSVSHICRDVNYGWLLRNIHANGASLFFICLYFHIGRGL 102

                         90       100
                 ....*....|....*....|....*..
gi 343467489  83 YYGSYMYKETWNIGVVLLLLVMATAFV 109
Cdd:MTH00034 103 YYGSYVNIETWNIGVILFLLTMLTAFV 129
CYTB MTH00145
cytochrome b; Provisional
 4-109 7.06e-65

cytochrome b; Provisional


Pssm-ID: 177203 [Multi-domain]  Cd Length: 379  Bit Score: 200.52  E-value: 7.06e-65
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 343467489   4 PSNISAWWNFGSLLGICLIMQVLTGLFLAMHYTADISSAFSSIAHICRDVQYGWFIRNMHANGASMFFICIYLHIGRGLY 83
Cdd:MTH00145  25 PVNLSIWWNFGSLLGLCLGIQILTGLFLSMHYTAHVDLAFSSVIHIMRDVNYGWLLRSLHANGASFFFICIYLHIGRGLY 104

                         90       100
                 ....*....|....*....|....*.
gi 343467489  84 YGSYMYKETWNIGVVLLLLVMATAFV 109
Cdd:MTH00145 105 YGSYLMQHTWNIGVTLLLLSMGTAFL 130
CYTB MTH00016
cytochrome b; Validated
 4-109 6.73e-62

cytochrome b; Validated


Pssm-ID: 177102 [Multi-domain]  Cd Length: 378  Bit Score: 192.58  E-value: 6.73e-62
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 343467489   4 PSNISAWWNFGSLLGICLIMQVLTGLFLAMHYTADISSAFSSIAHICRDVQYGWFIRNMHANGASMFFICIYLHIGRGLY 83
Cdd:MTH00016  25 PSNLSIWWNFGSLLGLCLVIQILTGLFLSMHYTPHIDLAFSSVAHISRDVNYGWLLRNLHANGASFFFICLYLHIGRGIY 104

                         90       100
                 ....*....|....*....|....*.
gi 343467489  84 YGSYMYKETWNIGVVLLLLVMATAFV 109
Cdd:MTH00016 105 YGSYFLMETWNIGVILLLLTMATAFL 130
CYTB MTH00224
cytochrome b; Provisional
 4-109 1.65e-53

cytochrome b; Provisional


Pssm-ID: 164767 [Multi-domain]  Cd Length: 379  Bit Score: 171.26  E-value: 1.65e-53
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 343467489   4 PSNISAWWNFGSLLGICLIMQVLTGLFLAMHYTADISSAFSSIAHICRDVQYGWFIRNMHANGASMFFICIYLHIGRGLY 83
Cdd:MTH00224  25 PNNISIWWNYGSLLGLCLVIQVLTGLFLSMHYAPNIEMAFSSVAHISRDVNYGWLLRSIHANGASMFFLFIYLHVGRGLY 104

                         90       100
                 ....*....|....*....|....*.
gi 343467489  84 YGSYMYKETWNIGVVLLLLVMATAFV 109
Cdd:MTH00224 105 YGSFNLSETWNIGVILFILTMATAFL 130
CYTB MTH00022
cytochrome b; Validated
 4-109 7.96e-51

cytochrome b; Validated


Pssm-ID: 164595 [Multi-domain]  Cd Length: 379  Bit Score: 164.10  E-value: 7.96e-51
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 343467489   4 PSNISAWWNFGSLLGICLIMQVLTGLFLAMHYTADISSAFSSIAHICRDVQYGWFIRNMHANGASMFFICIYLHIGRGLY 83
Cdd:MTH00022  23 PSNISYLWNFGSLLGLCLVIQIITGCFLSMHYCSDVSLAFASVGHIMRDVNYGFLLRYLHANGASLFFLCLYIHIGRGLY 102

                         90       100
                 ....*....|....*....|....*.
gi 343467489  84 YGSYMYKETWNIGVVLLLLVMATAFV 109
Cdd:MTH00022 103 YGGYLKFHVWNVGVVIFLLTMATAFM 128
CYTB MTH00053
cytochrome b; Provisional
 4-109 1.62e-48

cytochrome b; Provisional


Pssm-ID: 164624 [Multi-domain]  Cd Length: 381  Bit Score: 158.33  E-value: 1.62e-48
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 343467489   4 PSNISAWWNFGSLLGICLIMQVLTGLFLAMHYTADISSAFSSIAHICRDVQYGWFIRNMHANGASMFFICIYLHIGRGLY 83
Cdd:MTH00053  25 PSNISYLWNFGSLLGFCLIIQIITGIFLAMHYCADVNLAFSSVAHITRDVNYGFILRYLHANGASMFFLCVYFHIGRGIY 104

                         90       100
                 ....*....|....*....|....*.
gi 343467489  84 YGSYMYKETWNIGVVLLLLVMATAFV 109
Cdd:MTH00053 105 YGSYTKIIVWNVGVLIFLLMILTAFI 130
Cytochrome_b_N cd00284
Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit ...
 4-109 8.05e-45

Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit mitochondrial respiratory enzyme. Cytochrome b spans the mitochondrial membrane with 8 transmembrane helices (A-H) in eukaryotes. In plants and cyanobacteria, cytochrome b6 is analogous to eukaryote cytochrome b, containing two chains: helices A-D are encoded by the petB gene and helices E-H are encoded by the petD gene in these organisms. Cytochrome b/b6 contains two bound hemes and two ubiquinol/ubiquinone binding sites. The C-terminal portion of cytochrome b is described in a separate CD.


Pssm-ID: 238176  Cd Length: 200  Bit Score: 143.66  E-value: 8.05e-45
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 343467489   4 PSNISAWWNFGSLLGICLIMQVLTGLFLAMHYTADISSAFSSIAHICRDVQYGWFIRNMHANGASMFFICIYLHIGRGLY 83
Cdd:cd00284   16 PSNISYWWNFGSLLGTCLVIQILTGVFLAMHYTPDVTLAFSSVQYIMRDVNFGWLIRSLHANGASMFFLMLYLHIFRGLY 95

                         90       100
                 ....*....|....*....|....*...
gi 343467489  84 YGSYM--YKETWNIGVVLLLLVMATAFV 109
Cdd:cd00284   96 YGSYKkpRELTWVIGVILLLLTMATAFM 123
Cytochrome_B pfam00033
Cytochrome b/b6/petB;
4-109 7.18e-43

Cytochrome b/b6/petB;


Pssm-ID: 306530  Cd Length: 189  Bit Score: 138.28  E-value: 7.18e-43
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 343467489    4 PSNISAWWNFGSLLGICLIMQVLTGLFLAMHYTADISSAFSSIAHICRDVQYGWFIRNMHANGASMFFICIYLHIGRGLY 83
Cdd:pfam00033   7 PSNLSIWYNFGSLLGLCLAVQILTGVFLAFYYTPDVTLAFLSVQYIMRDVNFGWLIRSVHANGASMFFLMLYLHIFRGLY 86

                          90       100
                  ....*....|....*....|....*...
gi 343467489   84 YG--SYMYKETWNIGVVLLLLVMATAFV 109
Cdd:pfam00033  87 YGgfSYPRELTWVIGVILLVLTMSTAFI 114
QcrB/PetB COG1290
Cytochrome b subunit of the bc complex [Energy production and conversion];
1-108 2.96e-41

Cytochrome b subunit of the bc complex [Energy production and conversion];


Pssm-ID: 440901 [Multi-domain]  Cd Length: 393  Bit Score: 139.54  E-value: 2.96e-41
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 343467489   1 KKLPSNISAWWNFGSLLGICLIMQVLTGLFLAMHYTADISSAFSSIAHICRDVQYGWFIRNMHANGASMFFICIYLHIGR 80
Cdd:COG1290   30 YPFPKNWNFSYWFGELALYSFVIQILTGIFLTMYYKPSASEAFASVEYIMRDVPGGWLIRYMHHWGASLFFAAVYLHMFR 109

                         90       100       110
                 ....*....|....*....|....*....|
gi 343467489  81 GLYYGSYMY-KE-TWNIGVVLLLLVMATAF 108
Cdd:COG1290  110 GFFYGAYKKpRElNWIIGVLLLLLTMAEAF 139
CYTB MTH00033
cytochrome b; Provisional
 4-109 1.85e-40

cytochrome b; Provisional


Pssm-ID: 133672 [Multi-domain]  Cd Length: 383  Bit Score: 137.38  E-value: 1.85e-40
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 343467489   4 PSNISAWWNFGSLLGICLIMQVLTGLFLAMHYTADISSAFSSIAHICRDVQYGWFIRNMHANGASMFFICIYLHIGRGLY 83
Cdd:MTH00033  21 PSNISYWWNFGSLLCLCLGIQILTGVLLAMHYRSDVSLAFSSVAHIVRDVNYGWILRYVHANGASLFFICVYCHIGRGLY 100

                         90       100
                 ....*....|....*....|....*.
gi 343467489  84 YGSYMYKETWNIGVVLLLLVMATAFV 109
Cdd:MTH00033 101 YGGYSRVLTWIVGVLIFFIMMLTAFI 126
CYTB MTH00086
cytochrome b; Provisional
 4-108 3.30e-32

cytochrome b; Provisional


Pssm-ID: 177151 [Multi-domain]  Cd Length: 355  Bit Score: 115.04  E-value: 3.30e-32
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 343467489   4 PSNISAWWNFGSLLGICLIMQVLTGLFLAMHYTADISSAFSSIAHICRDVQYGWFIRNMHANGASMFFICIYLHIGRGLY 83
Cdd:MTH00086  13 SKSLSYWWNFGSMLGMVLVFQILTGTFLAFYYTADSSMAFSSVQYIMYEVNFGWLFRIFHFNGASLFFIFLYLHIFKGLF 92

                         90       100
                 ....*....|....*....|....*
gi 343467489  84 YGSYMYKETWNIGVVLLLLVMATAF 108
Cdd:MTH00086  93 MMSYRLKKVWISGLTIYLLVMMEAF 117
CYTB MTH00046
cytochrome b; Validated
 3-108 9.54e-22

cytochrome b; Validated


Pssm-ID: 177121 [Multi-domain]  Cd Length: 355  Bit Score: 87.35  E-value: 9.54e-22
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 343467489   3 LPSNISA--WWNFGSLLGICLIMQVLTGLFLAMHYTADISSAFSSIAHICRDVQYGWFIRNMHANGASMFFICIYLHIGR 80
Cdd:MTH00046  12 LPTNYSLnyYWCSGFVLSVFMVIQVLTGVLLSLLYVADSLCSFFCVMSLSNDSFFTWCVRYWHIWGVNVLFILLFIHMGR 91

                         90       100
                 ....*....|....*....|....*...
gi 343467489  81 GLYYGSYMYKETWNIGVVLLLLVMATAF 108
Cdd:MTH00046  92 ALYYSSYSKKGVWNVGFILYLLVMVEAF 119
PRK03735 PRK03735
cytochrome b6; Provisional
 13-108 2.04e-17

cytochrome b6; Provisional


Pssm-ID: 179639  Cd Length: 223  Bit Score: 73.98  E-value: 2.04e-17
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 343467489  13 FGSLLGICLIMQVLTGLFLAMHYTADISSAFSSIAHICRDVQYGWFIRNMHANGASMFFICIYLHIGRGLYYGSYMYKE- 91
Cdd:PRK03735  44 FGGLTFFCFVIQILSGMFLTMYYVPDIKNAYESVYYLQNEVAFGWIVRGMHHWGASLVIVMMFLHTLRVFFTGGYKKPRe 123

                         90
                 ....*....|....*...
gi 343467489  92 -TWNIGVVLLLLVMATAF 108
Cdd:PRK03735 124 lNWVVGVLIFFVTVGLGF 141
petB CHL00070
cytochrome b6
 1-99 6.19e-13

cytochrome b6


Pssm-ID: 177009  Cd Length: 215  Bit Score: 62.05  E-value: 6.19e-13
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 343467489   1 KKLPSNISAWWNFGSLLGICLIMQVLTGLFLAMHYTADISSAFSSIAHICRDVQYGWFIRNMHANGASMFFICIYLHIGR 80
Cdd:CHL00070  24 KYVPPHVNIFYCLGGITLTCFLVQVATGFAMTFYYRPTVTEAFASVQYIMTEVNFGWLIRSVHRWSASMMVLMMILHVFR 103

                         90       100
                 ....*....|....*....|.
gi 343467489  81 GLYYGSYMYKE--TWNIGVVL 99
Cdd:CHL00070 104 VYLTGGFKKPRelTWVTGVVL 124
Cytochrom_B_N_2 pfam13631
Cytochrome b(N-terminal)/b6/petB;
68-109 1.96e-07

Cytochrome b(N-terminal)/b6/petB;


Pssm-ID: 433364  Cd Length: 169  Bit Score: 46.47  E-value: 1.96e-07
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....
gi 343467489   68 SMFFICIYLHIGRGLYYGSYMYKE--TWNIGVVLLLLVMATAFV 109
Cdd:pfam13631   1 YIFIAAIYVHMLRIFFTGAYRKPRelNWIIGVLLLLLTLGEGFT 44
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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