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Conserved domains on  [gi|342221226|gb|AEL17821|]
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hypothetical protein TURBIDO_46 [Mycobacterium phage Turbido]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
GP44 pfam17510
Gene product 44; This is a family with unknown function. Family members are hypothetical ...
 1-106 3.74e-62

Gene product 44; This is a family with unknown function. Family members are hypothetical proteins found in Mycobacterium phages.


:

Pssm-ID: 375207  Cd Length: 107  Bit Score: 184.46  E-value: 3.74e-62
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 342221226    1 MPDRFEAIVVEPRDPALPLDVQGVNLRRKAIEAMKDLGTVDENSVRYKAGTEDATLNVEGHFTSLWQRNLFAALFYADGK 80
Cdd:pfam17510   1 MADRITAIVAEPRDDALPLDVQGVNLRRKAIELMKEIAEVDENSVRYKGATEDATISLGGDLVSLWQRNLIAALFYADGK 80

                          90       100
                  ....*....|....*....|....*..
gi 342221226   81 ANKER-DAAYVTDEDRRNFTSVRVNRD 106
Cdd:pfam17510  81 AHKEVvGPVVHKDRDTRRFSSVSVERD 107
 
Name Accession Description Interval E-value
GP44 pfam17510
Gene product 44; This is a family with unknown function. Family members are hypothetical ...
 1-106 3.74e-62

Gene product 44; This is a family with unknown function. Family members are hypothetical proteins found in Mycobacterium phages.


Pssm-ID: 375207  Cd Length: 107  Bit Score: 184.46  E-value: 3.74e-62
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 342221226    1 MPDRFEAIVVEPRDPALPLDVQGVNLRRKAIEAMKDLGTVDENSVRYKAGTEDATLNVEGHFTSLWQRNLFAALFYADGK 80
Cdd:pfam17510   1 MADRITAIVAEPRDDALPLDVQGVNLRRKAIELMKEIAEVDENSVRYKGATEDATISLGGDLVSLWQRNLIAALFYADGK 80

                          90       100
                  ....*....|....*....|....*..
gi 342221226   81 ANKER-DAAYVTDEDRRNFTSVRVNRD 106
Cdd:pfam17510  81 AHKEVvGPVVHKDRDTRRFSSVSVERD 107
 
Name Accession Description Interval E-value
GP44 pfam17510
Gene product 44; This is a family with unknown function. Family members are hypothetical ...
 1-106 3.74e-62

Gene product 44; This is a family with unknown function. Family members are hypothetical proteins found in Mycobacterium phages.


Pssm-ID: 375207  Cd Length: 107  Bit Score: 184.46  E-value: 3.74e-62
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 342221226    1 MPDRFEAIVVEPRDPALPLDVQGVNLRRKAIEAMKDLGTVDENSVRYKAGTEDATLNVEGHFTSLWQRNLFAALFYADGK 80
Cdd:pfam17510   1 MADRITAIVAEPRDDALPLDVQGVNLRRKAIELMKEIAEVDENSVRYKGATEDATISLGGDLVSLWQRNLIAALFYADGK 80

                          90       100
                  ....*....|....*....|....*..
gi 342221226   81 ANKER-DAAYVTDEDRRNFTSVRVNRD 106
Cdd:pfam17510  81 AHKEVvGPVVHKDRDTRRFSSVSVERD 107
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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