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Conserved domains on  [gi|342161467|gb|AEL16593|]
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NADH dehydrogenase subunit 5, partial (mitochondrion) [Gymnobothrus temporalis]

Protein Classification

NADH dehydrogenase subunit 5( domain architecture ID 11475935)

NADH dehydrogenase subunit 5 (ND5/NADH5) is the core subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I) that functions in the transfer of electrons from NADH to the respiratory chain; the immediate electron acceptor for the enzyme is believed to be ubiquinone

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
ND5 MTH00165
NADH dehydrogenase subunit 5; Provisional
 1-201 1.28e-70

NADH dehydrogenase subunit 5; Provisional


:

Pssm-ID: 214444 [Multi-domain]  Cd Length: 573  Bit Score: 224.25  E-value: 1.28e-70
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 342161467   1 LFMCAGSMIHNLKDSQDIRFMGSIVNFMPLTSVCFNVSSLSLCGLPFLAGFYSKDLILEMVCLSWINCLIFFLFFFSTGL 80
Cdd:MTH00165 308 LFLCAGSIIHNMSNSQDIRFMGGLSNFMPLTSSCFNISNLSLCGFPFLSGFYSKDLILEMVSMSNLNFFIFFLFFFSTGL 387

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 342161467  81 TASYSFRLFYYSMSGDNNFYPSFSFDDKGYYISFGMIALLFVAVFGGSFLSWLIFPIPHMIVLPYYLKFLTITVVVLGSY 160
Cdd:MTH00165 388 TVSYSFRLIYYSMSGDFNLKSLNNLSDESKFMLKSMILLLFMSIFGGSMLSWLIFPEPYMICLPFYLKLLTLFVILLGGW 467

                        170       180       190       200
                 ....*....|....*....|....*....|....*....|.
gi 342161467 161 LGYFISNFGFSYNLFSLNMLPYVSFVGSMWFMPFLSTNFVS 201
Cdd:MTH00165 468 LGYELSLMSLSYNLKSLKNYKLSSFLGSMWFMPFLSTYGIS 508
 
Name Accession Description Interval E-value
ND5 MTH00165
NADH dehydrogenase subunit 5; Provisional
 1-201 1.28e-70

NADH dehydrogenase subunit 5; Provisional


Pssm-ID: 214444 [Multi-domain]  Cd Length: 573  Bit Score: 224.25  E-value: 1.28e-70
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 342161467   1 LFMCAGSMIHNLKDSQDIRFMGSIVNFMPLTSVCFNVSSLSLCGLPFLAGFYSKDLILEMVCLSWINCLIFFLFFFSTGL 80
Cdd:MTH00165 308 LFLCAGSIIHNMSNSQDIRFMGGLSNFMPLTSSCFNISNLSLCGFPFLSGFYSKDLILEMVSMSNLNFFIFFLFFFSTGL 387

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 342161467  81 TASYSFRLFYYSMSGDNNFYPSFSFDDKGYYISFGMIALLFVAVFGGSFLSWLIFPIPHMIVLPYYLKFLTITVVVLGSY 160
Cdd:MTH00165 388 TVSYSFRLIYYSMSGDFNLKSLNNLSDESKFMLKSMILLLFMSIFGGSMLSWLIFPEPYMICLPFYLKLLTLFVILLGGW 467

                        170       180       190       200
                 ....*....|....*....|....*....|....*....|.
gi 342161467 161 LGYFISNFGFSYNLFSLNMLPYVSFVGSMWFMPFLSTNFVS 201
Cdd:MTH00165 468 LGYELSLMSLSYNLKSLKNYKLSSFLGSMWFMPFLSTYGIS 508
NADH5_C pfam06455
NADH dehydrogenase subunit 5 C-terminus; This family represents the C-terminal region of ...
 84-201 1.42e-24

NADH dehydrogenase subunit 5 C-terminus; This family represents the C-terminal region of several NADH dehydrogenase subunit 5 proteins and is found in conjunction with pfam00361 and pfam00662.


Pssm-ID: 368917 [Multi-domain]  Cd Length: 181  Bit Score: 94.92  E-value: 1.42e-24
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 342161467   84 YSFRLFYYSMSGDNNFYPSFSFDDKGYYISFGMIALLFVAVFGGSFLSWLIFPIPHMIVLPYYLKFLTITVVVLGSYLGY 163
Cdd:pfam06455   1 YSFRLIYYVMTGSPRFSSLSPINENNPIMINPIKRLAIGSIIGGSLLSWLIFPKPPMMTMPLYLKLLALLVTILGLLLGL 80

                          90       100       110
                  ....*....|....*....|....*....|....*...
gi 342161467  164 FISNFGFSYNLFSLNMlPYVSFVGSMWFMPFLSTNFVS 201
Cdd:pfam06455  81 ELSNLSNKQLKKSLNF-NLHSFSGSMWFFPNLSHRLIP 117
NuoL COG1009
Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ ...
 1-165 7.78e-21

Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ antiporter, MnhA subunit [Energy production and conversion]; Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ antiporter, MnhA subunit is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440633 [Multi-domain]  Cd Length: 608  Bit Score: 89.44  E-value: 7.78e-21
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 342161467   1 LFMCAGSMIHNLkDSQDIRFMGSIVNFMPLTSVCFNVSSLSLCGLPFLAGFYSKDLILE-MVCLSWINCLIFFLFFFSTG 79
Cdd:COG1009  340 LFLGAGSVIHAT-GTRDIRKMGGLRKKMPITAITFLIGALSLAGIPPFAGFFSKEAILEaALEAGGLGPLLLAVALLGAF 418

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 342161467  80 LTASYSFRLFYYSMSGDNNFYPSFSFDDKGYYISFGMIALLFVAVFGGSFLSWL---------IFPIPHMIVLPYYLKFL 150
Cdd:COG1009  419 LTAFYSFRLFFLVFFGKPRPKTPKHPHESPWLMTLPLVVLAVLSLVLGLLLPGLlegllapaaVLGGELHLAHGLLLNAL 498

                        170
                 ....*....|....*
gi 342161467 151 TITVVVLGSYLGYFI 165
Cdd:COG1009  499 PLLLSLLGIALGYLL 513
 
Name Accession Description Interval E-value
ND5 MTH00165
NADH dehydrogenase subunit 5; Provisional
 1-201 1.28e-70

NADH dehydrogenase subunit 5; Provisional


Pssm-ID: 214444 [Multi-domain]  Cd Length: 573  Bit Score: 224.25  E-value: 1.28e-70
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 342161467   1 LFMCAGSMIHNLKDSQDIRFMGSIVNFMPLTSVCFNVSSLSLCGLPFLAGFYSKDLILEMVCLSWINCLIFFLFFFSTGL 80
Cdd:MTH00165 308 LFLCAGSIIHNMSNSQDIRFMGGLSNFMPLTSSCFNISNLSLCGFPFLSGFYSKDLILEMVSMSNLNFFIFFLFFFSTGL 387

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 342161467  81 TASYSFRLFYYSMSGDNNFYPSFSFDDKGYYISFGMIALLFVAVFGGSFLSWLIFPIPHMIVLPYYLKFLTITVVVLGSY 160
Cdd:MTH00165 388 TVSYSFRLIYYSMSGDFNLKSLNNLSDESKFMLKSMILLLFMSIFGGSMLSWLIFPEPYMICLPFYLKLLTLFVILLGGW 467

                        170       180       190       200
                 ....*....|....*....|....*....|....*....|.
gi 342161467 161 LGYFISNFGFSYNLFSLNMLPYVSFVGSMWFMPFLSTNFVS 201
Cdd:MTH00165 468 LGYELSLMSLSYNLKSLKNYKLSSFLGSMWFMPFLSTYGIS 508
ND5 MTH00209
NADH dehydrogenase subunit 5; Provisional
 1-197 2.44e-43

NADH dehydrogenase subunit 5; Provisional


Pssm-ID: 177252 [Multi-domain]  Cd Length: 564  Bit Score: 152.11  E-value: 2.44e-43
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 342161467   1 LFMCAGSMIHNLKDSQDIRFMGSIVNFMPLTSVCFNVSSLSLCGLPFLAGFYSKDLILEMVCLSWINCLIFFLFFFSTGL 80
Cdd:MTH00209 304 LFICAGNIIHSHGHSQDIRMVGNLWYQMPITSICLNIANLSLCGIPFLAGFYSKDLILESMLESNMPIMTLILMFLSTSL 383

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 342161467  81 TASYSFRLFYYSMSGDNNFYPSFSFDDKGYYISFGMIALLFVAVFGGSFLSWLIFPIPHMIVLPYYLKFLTITVVVLGSY 160
Cdd:MTH00209 384 TAAYSMRLSYFSLWGPNSSKSLNSSFDQNKLNLKPMLVLTLGSITGGSVMSWVMVPSVNSVVLPWFLKLLPIMLILFGVL 463

                        170       180       190
                 ....*....|....*....|....*....|....*..
gi 342161467 161 LGYFISNfgfsYNLFSLNMLPYVSFVGSMWFMPFLST 197
Cdd:MTH00209 464 LMYMVLK----KNFFLIKGYKVNYFLSQMWFLPDLSS 496
ND5 MTH00207
NADH dehydrogenase subunit 5; Provisional
 1-201 1.75e-41

NADH dehydrogenase subunit 5; Provisional


Pssm-ID: 164753 [Multi-domain]  Cd Length: 572  Bit Score: 147.22  E-value: 1.75e-41
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 342161467   1 LFMCAGSMIHNLKDSQDIRFMGSIVNFMPLTSVCFNVSSLSLCGLPFLAGFYSKDLILEMVCLSWINCLIFFLFFFSTGL 80
Cdd:MTH00207 308 LFVCAGSLIHSHHHSQDLRTMGNLTNQMPLTTSCLLIANLALCGSPFLSGFYSKDLILESSLFYPHNSLMILMIFLATAL 387

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 342161467  81 TASYSFRLFYYSMSGDNNFYPSFSFDDKGYYISFGMIALLFVAVFGGSFLSWLIFPIPHMIVLPYYLKFLTITVVVLGSY 160
Cdd:MTH00207 388 TAAYSTRFTLAVLWSPNSSSPYHHLEDEDKSLTTPMLLLTLGAITSGSALNWWLPTPQEEPILPLQYKLLPLLVVTLGAL 467

                        170       180       190       200
                 ....*....|....*....|....*....|....*....|.
gi 342161467 161 LGYFISNFGFSYNLFSLNMLPYVSFVGSMWFMPFLSTNFVS 201
Cdd:MTH00207 468 LAWLFTTPNITKTPLLINNPLSHFASCLMWFLVPLSSQFIM 508
ND5 MTH00151
NADH dehydrogenase subunit 5; Provisional
 1-201 1.82e-38

NADH dehydrogenase subunit 5; Provisional


Pssm-ID: 214436 [Multi-domain]  Cd Length: 565  Bit Score: 138.82  E-value: 1.82e-38
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 342161467   1 LFMCAGSMIHNLKDSQDIRFMGSIVNFMPLTSVCFNVSSLSLCGLPFLAGFYSKDLILEMVCLSWINCLIFFLFFFSTGL 80
Cdd:MTH00151 305 LFLCAGSIIHSSSGTQDIRLLGSLFLSLPLTSGCLNISSLSLCGAPFLSGFYSKDLILESSLMSPTSLLMVLLMFVGVGL 384

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 342161467  81 TASYSFRLFYYSMSGDNNFYPSFSFDDKGYYISFGMIALLFVAVFGGSFLSWLIFPIPHMIVLPYYLKFLTITVVVLGSY 160
Cdd:MTH00151 385 TALYSARLSFCLVWGSMKSSSLSSKSDEDFYVSLPMLLLSLGALIGGKLLQSLFEGFSEEFFLPSYLKLLIGFVILLGLF 464

                        170       180       190       200
                 ....*....|....*....|....*....|....*....|.
gi 342161467 161 LGYFISNFGFsynlFSLNMLPYVSFVGSMWFMPFLSTNFVS 201
Cdd:MTH00151 465 LSFGFWDSGF----SSSKMVKLSFFFSSMWFLSPLSSQPLK 501
ND5 MTH00208
NADH dehydrogenase subunit 5; Provisional
 1-201 5.45e-31

NADH dehydrogenase subunit 5; Provisional


Pssm-ID: 177251 [Multi-domain]  Cd Length: 628  Bit Score: 118.53  E-value: 5.45e-31
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 342161467   1 LFMCAGSMIHNLKDSQDIRFMGSIVNFMPLTSVCFNVSSLSLCGLPFLAGFYSKDLILEMVCLSWINCLIFFLFFFSTGL 80
Cdd:MTH00208 365 LFLCSGSIIHSLNNEQDLRKMGGLSFLLPVTSSCIILGSLALMGTPFLAGFYSKDLILEAGLASISNLLSIILALIATLL 444

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 342161467  81 TASYSFRLFYYSMSGDNNFYPSFSFDDKGYYISFGMIALLFVAVFGGSFLSWLIFPIPHmIVLPYYLKFLTITVVVLGSY 160
Cdd:MTH00208 445 TAVYSFRIIFFCFLNNPSFSPLSPISEENPNLTNPLLRLAIGTIISGWFFSNFVFNLPP-LTLPLILKSLPLIVTIIGAA 523

                        170       180       190       200
                 ....*....|....*....|....*....|....*....|.
gi 342161467 161 LGYFISNFgFSYNLFSLNmlpYVSFVGSMWFMPFLSTNFVS 201
Cdd:MTH00208 524 FSFSFLLS-LSSNPINSN---FFSFLSNQWFFVNISHSIII 560
ND5 MTH00004
NADH dehydrogenase subunit 5; Validated
 1-167 6.70e-31

NADH dehydrogenase subunit 5; Validated


Pssm-ID: 214398 [Multi-domain]  Cd Length: 602  Bit Score: 117.96  E-value: 6.70e-31
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 342161467   1 LFMCAGSMIHNLKDSQDIRFMGSIVNFMPLTSVCFNVSSLSLCGLPFLAGFYSKDLILEMVCLSWINCLIFFLFFFSTGL 80
Cdd:MTH00004 338 LFLCSGSIIHNLNNEQDIRKMGGLQKTLPITSSCLTIGNLALMGTPFLSGFYSKDTIIETLNTSYLNAWALLLTLLATSF 417

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 342161467  81 TASYSFRLFYYSMSGDNNFYPSFSFDDKGYYISFGMIALLFVAVFGGSFLSWLIFPI-PHMIVLPYYLKFLTITVVVLGS 159
Cdd:MTH00004 418 TAAYSLRMILLVQTGFPRTPPTTPINENTPTIINPITRLALGSILAGLLISSTILPTkTPPMTMPTTTKLAALIVTILGI 497


                 ....*...
gi 342161467 160 YLGYFISN 167
Cdd:MTH00004 498 LLALELSN 505
ND5 MTH00108
NADH dehydrogenase subunit 5; Provisional
 1-182 1.75e-30

NADH dehydrogenase subunit 5; Provisional


Pssm-ID: 177170 [Multi-domain]  Cd Length: 602  Bit Score: 116.88  E-value: 1.75e-30
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 342161467   1 LFMCAGSMIHNLKDSQDIRFMGSIVNFMPLTSVCFNVSSLSLCGLPFLAGFYSKDLILEMVCLSWINCLIFFLFFFSTGL 80
Cdd:MTH00108 339 LFMCSGSIIHNLNDEQDIRKMGGLFKTLPFTSTALIIGSLALTGMPFLTGFYSKDLIIEAANTSYTNAWALLITLIATSL 418

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 342161467  81 TASYSFRLFYYSMSGDNNFYPSFSFDDKGYYISFGMIALLFVAVFGGSFLSWLIFP--IPHMiVLPYYLKFLTITVVVLG 158
Cdd:MTH00108 419 TAAYSTRIIFFALLGQPRFPPLITINENNPLLINPIKRLLLGSIFAGFLISNNIPPttIPQM-TMPLYLKLTALAVTILG 497

                        170       180       190
                 ....*....|....*....|....*....|....
gi 342161467 159 SYLGYFISNfgFSYNL----------FSlNMLPY 182
Cdd:MTH00108 498 FILALELNL--LTNNLkfkypsntfkFS-NMLGY 528
ND5 MTH00211
NADH dehydrogenase subunit 5; Provisional
 1-201 1.13e-29

NADH dehydrogenase subunit 5; Provisional


Pssm-ID: 214459 [Multi-domain]  Cd Length: 597  Bit Score: 114.66  E-value: 1.13e-29
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 342161467   1 LFMCAGSMIHNLKDSQDIRFMGSIVNFMPLTSVCFNVSSLSLCGLPFLAGFYSKDLILEMVCLSWINCLIFFLFFFSTGL 80
Cdd:MTH00211 333 LFMCSGSIIHGLNNEQDIRKMGGLSKNLPFTSSCLFLGSLALMGFPFLSGFFSKDLILESMNGSYLNAWALLLTLLATSL 412

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 342161467  81 TASYSFRLFYYSMSGDNNFYPSFSFDDKGYYISFGMIALLFVAVFGGSFLSWLIFPIPHMIV-LPYYLKFLTITVVVLGS 159
Cdd:MTH00211 413 TAAYSFRLIFLSLGGYPRFLSLSPINENYKLLKNPLKRLALGSILAGFIITSNLPPEKPEILsLPFLLKLMPLLVTIVGL 492

                        170       180       190       200
                 ....*....|....*....|....*....|....*....|..
gi 342161467 160 YLGYFISNFgfsynLFSLNMLPYVSFVGSMWFMPFLSTNFVS 201
Cdd:MTH00211 493 LLGLELVNL-----THKQLKTSTLSFSNMLGYYPPIIHRLLP 529
ND5 MTH00066
NADH dehydrogenase subunit 5; Provisional
 1-168 8.25e-29

NADH dehydrogenase subunit 5; Provisional


Pssm-ID: 214416 [Multi-domain]  Cd Length: 598  Bit Score: 112.31  E-value: 8.25e-29
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 342161467   1 LFMCAGSMIHNLKDSQDIRFMGSIVNFMPLTSVCFNVSSLSLCGLPFLAGFYSKDLILEMVCLSWINCLIFFLFFFSTGL 80
Cdd:MTH00066 336 LFLCSGSIIHSLNDEQDIRKMGGLQKALPITTSCLTIGSLALTGTPFLAGFFSKDAIIEAMNTSNLNSWALILTLIATSF 415

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 342161467  81 TASYSFRLFYYSMSGDNNFYPSFSFDDKGYYISFGMIALLFVAVFGGSFLSWLIFPIPHMIV-LPYYLKFLTITVVVLGS 159
Cdd:MTH00066 416 TAVYSFRIIYFSSMKFPRSLPLSPINENNPLIINPIKRLAWGSIIAGLLIIFNILPMKPQILtMPTFMKLAALLVTLLGL 495


                 ....*....
gi 342161467 160 YLGYFISNF 168
Cdd:MTH00066 496 LIALDLAKI 504
ND5 MTH00137
NADH dehydrogenase subunit 5; Provisional
 1-93 1.73e-25

NADH dehydrogenase subunit 5; Provisional


Pssm-ID: 214428 [Multi-domain]  Cd Length: 611  Bit Score: 102.60  E-value: 1.73e-25
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 342161467   1 LFMCAGSMIHNLKDSQDIRFMGSIVNFMPLTSVCFNVSSLSLCGLPFLAGFYSKDLILEMVCLSWINCLIFFLFFFSTGL 80
Cdd:MTH00137 344 LFLCSGSIIHSLNDEQDIRKMGGLHHLTPFTSSCLTIGSLALTGTPFLAGFFSKDAIIEALNTSHLNAWALTLTLIATSF 423

                         90
                 ....*....|....
gi 342161467  81 TASYSFRL-FYYSM 93
Cdd:MTH00137 424 TAVYSLRVvFFVSM 437
NADH5_C pfam06455
NADH dehydrogenase subunit 5 C-terminus; This family represents the C-terminal region of ...
 84-201 1.42e-24

NADH dehydrogenase subunit 5 C-terminus; This family represents the C-terminal region of several NADH dehydrogenase subunit 5 proteins and is found in conjunction with pfam00361 and pfam00662.


Pssm-ID: 368917 [Multi-domain]  Cd Length: 181  Bit Score: 94.92  E-value: 1.42e-24
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 342161467   84 YSFRLFYYSMSGDNNFYPSFSFDDKGYYISFGMIALLFVAVFGGSFLSWLIFPIPHMIVLPYYLKFLTITVVVLGSYLGY 163
Cdd:pfam06455   1 YSFRLIYYVMTGSPRFSSLSPINENNPIMINPIKRLAIGSIIGGSLLSWLIFPKPPMMTMPLYLKLLALLVTILGLLLGL 80

                          90       100       110
                  ....*....|....*....|....*....|....*...
gi 342161467  164 FISNFGFSYNLFSLNMlPYVSFVGSMWFMPFLSTNFVS 201
Cdd:pfam06455  81 ELSNLSNKQLKKSLNF-NLHSFSGSMWFFPNLSHRLIP 117
PRK06590 PRK06590
NADH:ubiquinone oxidoreductase subunit L; Reviewed
 1-165 1.77e-21

NADH:ubiquinone oxidoreductase subunit L; Reviewed


Pssm-ID: 235836 [Multi-domain]  Cd Length: 624  Bit Score: 91.37  E-value: 1.77e-21
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 342161467   1 LFMCAGSMIHNLKDSQDIRFMGSIVNFMPLTSVCFNVSSLSLCGLPFLAGFYSKDLILEmVCLSWINCLIFFLFFFSTGL 80
Cdd:PRK06590 346 LFLGAGSVIHAMHHEQDIRKMGGLRKKMPVTYATFLIGTLALIGIPPFAGFFSKDEILE-AAFANGHINLFVAGLVGAFL 424

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 342161467  81 TASYSFRLFYYSMSG---DNNFYPSfsfdDKGYYISFGMIALLFVAVFGG-----SFLSWLIFP-----IPHMIVLPYYL 147
Cdd:PRK06590 425 TAFYSFRLIFLVFHGkekEKIHHPH----ESPAVMTLPLIVLAVLSVFAGalivpPFLGVLPLTtelahGEAEHHLPVWV 500

                        170
                 ....*....|....*...
gi 342161467 148 KFLTITVVVLGSYLGYFI 165
Cdd:PRK06590 501 ALLPLVVALAGIALAWLL 518
NuoL COG1009
Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ ...
 1-165 7.78e-21

Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ antiporter, MnhA subunit [Energy production and conversion]; Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ antiporter, MnhA subunit is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440633 [Multi-domain]  Cd Length: 608  Bit Score: 89.44  E-value: 7.78e-21
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 342161467   1 LFMCAGSMIHNLkDSQDIRFMGSIVNFMPLTSVCFNVSSLSLCGLPFLAGFYSKDLILE-MVCLSWINCLIFFLFFFSTG 79
Cdd:COG1009  340 LFLGAGSVIHAT-GTRDIRKMGGLRKKMPITAITFLIGALSLAGIPPFAGFFSKEAILEaALEAGGLGPLLLAVALLGAF 418

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 342161467  80 LTASYSFRLFYYSMSGDNNFYPSFSFDDKGYYISFGMIALLFVAVFGGSFLSWL---------IFPIPHMIVLPYYLKFL 150
Cdd:COG1009  419 LTAFYSFRLFFLVFFGKPRPKTPKHPHESPWLMTLPLVVLAVLSLVLGLLLPGLlegllapaaVLGGELHLAHGLLLNAL 498

                        170
                 ....*....|....*
gi 342161467 151 TITVVVLGSYLGYFI 165
Cdd:COG1009  499 PLLLSLLGIALGYLL 513
ND5 MTH00210
NADH dehydrogenase subunit 5; Provisional
 1-200 1.02e-20

NADH dehydrogenase subunit 5; Provisional


Pssm-ID: 177253 [Multi-domain]  Cd Length: 616  Bit Score: 88.91  E-value: 1.02e-20
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 342161467   1 LFMCAGSMIHNLKDSQDIRFMGSIVNFMPLTSVCFNVSSLSLCGLPFLAGFYSKDLILEMVCLSWINCLIFFLFFFSTGL 80
Cdd:MTH00210 340 LFLSAGSVIHAVSDEQDMRKMGGLIKSIPFTYVMILIGSLSLMGFPYLTGFYSKDLILELTYDKYYIAFAYWLGSFSALL 419

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 342161467  81 TASYSFRLFYYSMSGDNNFYPS--FSFDDKGYYISFGMIALLFVAVFGGS-----FLSWLIFPIphmivLPYYLKFLTIT 153
Cdd:MTH00210 420 TAFYSIRLIYLTFITNTNSKKEvfIGVHESSWNITFPLLLLAFGSIFVGYlgkevVLSNVIPPI-----VPNSIKMIPLL 494

                        170       180       190       200       210
                 ....*....|....*....|....*....|....*....|....*....|...
gi 342161467 154 VVVLGSYLGYFISN------FGFSYNLFSLNMLPYVSFVGSMWFMPFLSTNFV 200
Cdd:MTH00210 495 FSLLGALLAFVIYNsmvfliKISRRGVSIRLYHVIYTFLNSAWQFNYVINHFI 547
ND5 MTH00020
NADH dehydrogenase subunit 5; Reviewed
 1-180 2.21e-20

NADH dehydrogenase subunit 5; Reviewed


Pssm-ID: 214400 [Multi-domain]  Cd Length: 610  Bit Score: 88.21  E-value: 2.21e-20
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 342161467   1 LFMCAGSMIHNLKDSQDIRFMGSIVNFMPLTSVCFNVSSLSLCGLPFLAGFYSKDLILEMVCLSWINCLIFFLFFFSTGL 80
Cdd:MTH00020 339 LFLSAGSVIHALSDEQDMRKMGGLISFLPLTYIFFLIGSLSLMGFPYLTGFYSKDLILELAFGQYYLIFAYWLGCFSALL 418

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 342161467  81 TASYSFRLFYYS-MSGDNNFYPSFSFDDKG-YYISFGMIALLFVAVFGGSFLSWLIF--------PIPHMI-VLPYYLKF 149
Cdd:MTH00020 419 TAFYSIRLIYLTfLSNTNLKKAVFFHLHEGdWNLLLPLGILALGSIFVGYLAKEMIWsfqitlppIVPLSIkLLPVFLSL 498

                        170       180       190
                 ....*....|....*....|....*....|..
gi 342161467 150 L-TITVVVLGSYLGYFISNFGFSYNLFSLNML 180
Cdd:MTH00020 499 GgIGLVIILYFYSSKTFRVPFSFIGRNSYTFL 530
PRK07376 PRK07376
NADH-quinone oxidoreductase subunit L;
1-96 4.68e-17

NADH-quinone oxidoreductase subunit L;


Pssm-ID: 236005 [Multi-domain]  Cd Length: 673  Bit Score: 78.53  E-value: 4.68e-17
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 342161467   1 LFMCAGSMIHNLKD--------SQDIRFMGSIVNFMPLTSVCFNVSSLSLCGLPFLAGFYSKDLILEMVCLSwiNCLIFF 72
Cdd:PRK07376 356 LFLGSGSVIHGMEEvvghdpvlAQDMRLMGGLRKYMPITAITFLIGCLAISGIPPFAGFWSKDEILGAAFEA--NPALWF 433

                         90       100
                 ....*....|....*....|....
gi 342161467  73 LFFFSTGLTASYSFRLFYYSMSGD 96
Cdd:PRK07376 434 VGFLTAGMTAFYMFRMYFLTFEGE 457
ndhF CHL00025
NADH dehydrogenase subunit 5
 1-114 3.77e-11

NADH dehydrogenase subunit 5


Pssm-ID: 214338 [Multi-domain]  Cd Length: 741  Bit Score: 61.45  E-value: 3.77e-11
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 342161467   1 LFMCAGSMIHNL--------KDSQDIRFMGSIVNFMPLTSVCFNVSSLSLCGLPFLAGFYSKDLILEMvclSWINCLIFF 72
Cdd:CHL00025 356 LFLGSGSVIHSMepivgyspDKSQNMVLMGGLRKYMPITKTTFLLGTLSLCGIPPLACFWSKDEILND---SWLYSPIFA 432

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|....*.
gi 342161467  73 LFFFST-GLTASYSFRLFYYSMSGD---NNFYPSFSFDDKGYYISF 114
Cdd:CHL00025 433 IIAWSTaGLTAFYMFRIYLLTFEGHlrvHFQNYSGKKNSSFYSISL 478
Proton_antipo_M pfam00361
Proton-conducting membrane transporter; This is a family of membrane transporters that ...
 1-77 5.48e-11

Proton-conducting membrane transporter; This is a family of membrane transporters that inlcudes some 7 of potentially 14-16 TM regions. In many instances the family forms part of complex I that catalyzes the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane, and in this context is a combination predominantly of subunits 2, 4, 5, 14, L, M and N. In many bacterial species these proteins are probable stand-alone transporters not coupled with oxidoreduction. The family in total represents homologs across the phyla.


Pssm-ID: 425636 [Multi-domain]  Cd Length: 291  Bit Score: 60.02  E-value: 5.48e-11
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 342161467    1 LFMCAGSMIHNLKDSQDIRFMGSIVNFMPLTSVCFNVSSLSLCGLPFLAGFYSKDLILEMVCLSWINCLIFFLFFFS 77
Cdd:pfam00361 215 LFLCAGSVIYRRVHTRNIRDYGGLAKTMPILALVFLVAMLSLAGLPPTAGFLGKFLILAAAVAASWIFLVLAGVVGS 291
ND5 MTH00032
NADH dehydrogenase subunit 5; Provisional
 1-60 5.45e-10

NADH dehydrogenase subunit 5; Provisional


Pssm-ID: 214407 [Multi-domain]  Cd Length: 669  Bit Score: 58.05  E-value: 5.45e-10
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 342161467   1 LFMCAGSMIHNLK-DSQDIRFMGSIVNFMPLTSVCFNVSSLSLCGLPFLAGFYSKDLILEM 60
Cdd:MTH00032 355 LFLSAGSVIHSTTvDEQDMRKMGGLIHSIPFTYTMMLIGSFSIMGLPYLTGFYSKDLILEL 415
HyfB COG0651
Formate hydrogenlyase subunit 3/Multisubunit Na+/H+ antiporter, MnhD subunit [Energy ...
 1-91 2.42e-08

Formate hydrogenlyase subunit 3/Multisubunit Na+/H+ antiporter, MnhD subunit [Energy production and conversion, Inorganic ion transport and metabolism];


Pssm-ID: 440416 [Multi-domain]  Cd Length: 430  Bit Score: 52.84  E-value: 2.42e-08
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 342161467   1 LFMCAGSMIHNLKdSQDIRFMGSIVNFMPLTSVCFNVSSLSLCGLPFLAGFYSKDLILEMVcLSWINCLIFFLFFFSTGL 80
Cdd:COG0651  340 LFLAAGAIERATG-TRDLDKLGGLGKRMPLTAAAFLIGALALAGLPPLSGFVSKWLLLQAA-LEAGAWLLAAVLLLSSLL 417

                         90
                 ....*....|.
gi 342161467  81 TASYSFRLFYY 91
Cdd:COG0651  418 TLAYFVRIFGR 428
PRK12667 PRK12667
putative monovalent cation/H+ antiporter subunit D; Reviewed
 1-90 6.06e-07

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 237167 [Multi-domain]  Cd Length: 520  Bit Score: 48.81  E-value: 6.06e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 342161467   1 LFMCAGSMIHNLKdSQDIRFMGSIVNFMPLTSVCFNVSSLSLCGLPFLAGFYSKDLILEMVCLSWINCLIFFLFFFSTgL 80
Cdd:PRK12667 363 LFLASGVFIHAAG-TRDIDELAGLGRKMPIASFAFLIGALSLVGIPPLNGFFSKLLLFNALLESGFYLPALVLLIASA-I 440

                         90
                 ....*....|
gi 342161467  81 TASYSFRLFY 90
Cdd:PRK12667 441 SLVGYFRAWY 450
PRK07390 PRK07390
NAD(P)H-quinone oxidoreductase subunit F; Validated
 1-82 9.58e-06

NAD(P)H-quinone oxidoreductase subunit F; Validated


Pssm-ID: 236008 [Multi-domain]  Cd Length: 613  Bit Score: 45.29  E-value: 9.58e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 342161467   1 LFMCAGSMIHNlKDSQDIRFMGSIVNFMPLTSVCFNVSSLSLCGLPFLAGFYSkdlILEMVCLSWINCLIFF-LFFFSTG 79
Cdd:PRK07390 349 LFMSVGSIILT-TITQDLTELGGLWSRMPATTLAFLVGSAGLVALLPLGGFWA---LLRLADGLWAVSPWLVgVLLLVNA 424


                 ...
gi 342161467  80 LTA 82
Cdd:PRK07390 425 LTA 427
NuoM COG1008
NADH:ubiquinone oxidoreductase subunit 4 (chain M) [Energy production and conversion]; NADH: ...
 1-89 6.83e-05

NADH:ubiquinone oxidoreductase subunit 4 (chain M) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 4 (chain M) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440632 [Multi-domain]  Cd Length: 488  Bit Score: 42.76  E-value: 6.83e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 342161467   1 LFMCAGSMIHNLKdSQDIRFMGSIVNFMPLTSVCFNVSSLSLCGLPFLAGFYSKDLILEMVCLSWIncLIFFLFFFSTGL 80
Cdd:COG1008  343 LFLLVGVLYDRTH-TRDIADLGGLAKRMPVLAALFLLAALASLGLPGTSGFVGEFLVLLGAFQVNP--WLAILAALGLIL 419


                 ....*....
gi 342161467  81 TASYSFRLF 89
Cdd:COG1008  420 TAAYLLWMY 428
PRK08667 PRK08667
hydrogenase membrane subunit; Validated
 1-59 7.02e-05

hydrogenase membrane subunit; Validated


Pssm-ID: 236331 [Multi-domain]  Cd Length: 644  Bit Score: 42.80  E-value: 7.02e-05
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|....*....
gi 342161467   1 LFMCAGSMIHNLKDsQDIRFMGSIVNFMPLTSVCFNVSSLSLCGLPFLAGFYSKDLILE 59
Cdd:PRK08667 349 LFLTAGSVVHATGT-RNIEKMGGLVKLMPYTSALFLVGAVSIAALPPFNGFASELLLYE 406
ND5 MTH00095
NADH dehydrogenase subunit 5; Provisional
 1-152 1.23e-04

NADH dehydrogenase subunit 5; Provisional


Pssm-ID: 177158 [Multi-domain]  Cd Length: 527  Bit Score: 41.83  E-value: 1.23e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 342161467   1 LFMCAGSMIHNLKDSQDIRFMGSIVNFMPLTSVCFNVSSLSLCGLPFLAGFYSKDLILEMVCLSWINCLIFFLFFFSTGL 80
Cdd:MTH00095 292 LFMQVGYLIHSNFGQQDGRNYSNNGNLPMFIQLQLLVTLFCLCGLMFTSGMVSKELILELFFFNNYMIFFSLMFFFSVFL 371

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 342161467  81 TASYSFRLFYysmsgdnNFYPSFSFDDKGYYISFGMIALLFVAVFGG-SFLSWLIFPIPHMIVLPYYLKFLTI 152
Cdd:MTH00095 372 TFGYSYRLWK-------SFFLSFSKVVNVYSSSVLMNFLSLMLVFFSvFFLWWLNFNLLNLPSLFLYLDFYVP 437
PRK08375 PRK08375
putative monovalent cation/H+ antiporter subunit D; Reviewed
 1-91 3.36e-04

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 236251 [Multi-domain]  Cd Length: 487  Bit Score: 40.63  E-value: 3.36e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 342161467   1 LFMCAGSMIHNLKdSQDIRFMGSIVNFMPLTSVCFNVSSLSLCGLPFLAGFYSK-DLILEMVCLSWINCLIFFLffFSTG 79
Cdd:PRK08375 339 LFLAAGAIEVTYG-TRRLSELSGLGRRMPLTAAAFAVASLSLIGVPPTSGFVSKwYLVVGAVEAGQWLVLAVLL--ASSL 415

                         90
                 ....*....|..
gi 342161467  80 LTASYSFRLFYY 91
Cdd:PRK08375 416 LALLYFLRIWYR 427
PRK12650 PRK12650
DUF4040 family protein;
1-59 3.92e-04

DUF4040 family protein;


Pssm-ID: 237158 [Multi-domain]  Cd Length: 962  Bit Score: 40.80  E-value: 3.92e-04
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|....*....
gi 342161467   1 LFMCAGSMIHNlKDSQDIRFMGSIVNFMPLTSVCFNVSSLSLCGLPFLAGFYSKDLILE 59
Cdd:PRK12650 340 LFMLIGVVDHQ-AGTRDIRRLGSLWRRMPFTFVSVTIAALSMAAVPPLFGFVSKEGMLT 397
PRK06521 PRK06521
hydrogenase 4 subunit B; Validated
 1-64 4.48e-04

hydrogenase 4 subunit B; Validated


Pssm-ID: 235820 [Multi-domain]  Cd Length: 667  Bit Score: 40.26  E-value: 4.48e-04
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 342161467   1 LFMCAGSMIHNLKdSQDIRFMGSIVNFMPLTSVCFNVSSLSLCGLPFLAGFYSKDLILEMVCLS 64
Cdd:PRK06521 355 LFLGAGAVLHATG-TRDMEKLGGLIRRMPWTAWAFLIGCLAISALPPLNGFVSEWLLLQSLLSS 417
PRK05846 PRK05846
NADH:ubiquinone oxidoreductase subunit M; Reviewed
 1-58 7.79e-04

NADH:ubiquinone oxidoreductase subunit M; Reviewed


Pssm-ID: 235622 [Multi-domain]  Cd Length: 497  Bit Score: 39.42  E-value: 7.79e-04
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|....*...
gi 342161467   1 LFMCAGSMIHNLKdSQDIRFMGSIVNFMPLTSVCFNVSSLSLCGLPFLAGFYSKDLIL 58
Cdd:PRK05846 345 LFLLVGVLYDRLH-TRDIADYGGLAKVMPVLAAFFLFFAMASLGLPGTSGFVGEFLIL 401
PRK12647 PRK12647
putative monovalent cation/H+ antiporter subunit A; Reviewed
 1-59 1.97e-03

putative monovalent cation/H+ antiporter subunit A; Reviewed


Pssm-ID: 237156 [Multi-domain]  Cd Length: 761  Bit Score: 38.36  E-value: 1.97e-03
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|....*....
gi 342161467   1 LFMCAGSMIHNlKDSQDIRFMGSIVNFMPLTSVCFNVSSLSLCGLPFLAGFYSKDLILE 59
Cdd:PRK12647 327 LFMVAGIIDHE-TGTRDITKLGGLRRAMPITAAAALLAALSMAGLPPLFGFLAKELIYE 384
PRK06589 PRK06589
putative monovalent cation/H+ antiporter subunit D; Reviewed
 1-124 2.74e-03

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 235835 [Multi-domain]  Cd Length: 489  Bit Score: 37.87  E-value: 2.74e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 342161467   1 LFMCAGSmIHNLKDSQDIRFMGSIVNFMPLTSVCFNVSSLSLCGLPFLAGFYSKDLILEMVCLS---WINCLIFFLFFFS 77
Cdd:PRK06589 348 LFYSMGS-IYSLKKEDQVDKLHGTSKSFPLISFIISISSLSLIGIPIFSGFISKFLILLAASEQnqpWLSIIVMLVVIAS 426

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|....*..
gi 342161467  78 TGLTASYSFRLFYysmsgdNNFYPSFsfdDKGYYISFGMIALLFVAV 124
Cdd:PRK06589 427 SILSALYLLKILS------SIYKPSL---SENSFITKSLPYLMQISV 464
PRK12646 PRK12646
DUF4040 family protein;
1-59 3.41e-03

DUF4040 family protein;


Pssm-ID: 183646 [Multi-domain]  Cd Length: 800  Bit Score: 37.81  E-value: 3.41e-03
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|....*....
gi 342161467   1 LFMCAGSMIHNlKDSQDIRFMGSIVNFMPLTSVCFNVSSLSLCGLPFLAGFYSKDLILE 59
Cdd:PRK12646 356 LFMGVGIIDHE-AGTRDIRILSGMRQLFPKMNLVMTIAALSMAGVPFLNGFLSKEMFLD 413
PRK08376 PRK08376
putative monovalent cation/H+ antiporter subunit D; Reviewed
 1-61 6.51e-03

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 236252 [Multi-domain]  Cd Length: 521  Bit Score: 36.61  E-value: 6.51e-03
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 342161467   1 LFMCAGSMIHNLkDSQDIRFMGSIVNFMPLTSVCFNVSSLSLCGLPFLAGFYSKDLILEMV 61
Cdd:PRK08376 367 LFLTAGAVIYET-GTRNLNELGGLARTMPKTTIAFLIGAAAIVGLPPFNGFASKWLIYESS 426
PRK12648 PRK12648
putative monovalent cation/H+ antiporter subunit A; Reviewed
 1-87 8.97e-03

putative monovalent cation/H+ antiporter subunit A; Reviewed


Pssm-ID: 237157 [Multi-domain]  Cd Length: 948  Bit Score: 36.32  E-value: 8.97e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 342161467   1 LFMCAGSMIHNlKDSQDIRFMGSIVNFMPLTSVCFNVSSLSLCGLPFLAGFYSKDL----ILEMVCLSWINCLIFFLFFF 76
Cdd:PRK12648 339 LFMAAGIIDHE-TGTRDMRRLSGLRRLMPITATLAMVAAAAMAGVPLLNGFLSKEMffaeTLDTHLLGSLDWLLPVAATL 417

                         90
                 ....*....|.
gi 342161467  77 STGLTASYSFR 87
Cdd:PRK12648 418 AGAFSVAYSLR 428
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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