|
Name |
Accession |
Description |
Interval |
E-value |
| LRR |
COG4886 |
Leucine-rich repeat (LRR) protein [Transcription]; |
140-281 |
5.42e-14 |
|
Leucine-rich repeat (LRR) protein [Transcription];
Pssm-ID: 443914 [Multi-domain] Cd Length: 414 Bit Score: 72.27 E-value: 5.42e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 341941211 140 DLENIPPLPQMT--TYLYARFNHISHIQAgDFKGLTKLRRIDLSGNSISSIhNDALRLLPALQDLILPENQLAALPV--- 214
Cdd:COG4886 102 DLSGNEELSNLTnlESLDLSGNQLTDLPE-ELANLTNLKELDLSNNQLTDL-PEPLGNLTNLKSLDLSNNQLTDLPEelg 179
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 341941211 215 -LPSgIEFLDVRLNRLQSsgiQPEAFVALKKLQFLYLANNMLDSIPGPLPL--SLRSLHLQNNMIETMES 281
Cdd:COG4886 180 nLTN-LKELDLSNNQITD---LPEPLGNLTNLEELDLSGNQLTDLPEPLANltNLETLDLSNNQLTDLPE 245
|
|
| PPP1R42 |
cd21340 |
protein phosphatase 1 regulatory subunit 42; Protein phosphatase 1 regulatory subunit 42 ... |
135-307 |
2.33e-10 |
|
protein phosphatase 1 regulatory subunit 42; Protein phosphatase 1 regulatory subunit 42 (PPP1R42), also known as leucine-rich repeat-containing protein 67 (lrrc67) or testis leucine-rich repeat (TLRR) protein, plays a role in centrosome separation. PPP1R42 has been shown to interact with the well-conserved signaling protein phosphatase-1 (PP1) and thereby increasing PP1's activity, which counters centrosome separation. Inhibition of PPP1R42 expression increases the number of centrosomes per cell while its depletion reduces the activity of PP1 leading to activation of NEK2, the kinase responsible for phosphorylation of centrosomal linker proteins promoting centrosome separation.
Pssm-ID: 411060 [Multi-domain] Cd Length: 220 Bit Score: 59.41 E-value: 2.33e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 341941211 135 YCDDADLENIPPLPQMT--TYLYARFNHISHIQagDFKGLTKLRRIDLSGNSISSIHNdaLRLLPALQDLILpENQlaal 212
Cdd:cd21340 30 YLYDNKITKIENLEFLTnlTHLYLQNNQIEKIE--NLENLVNLKKLYLGGNRISVVEG--LENLTNLEELHI-ENQ---- 100
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 341941211 213 pVLPSGIEFLdvrlnrlqssgIQPEAFVALKK-LQFLYLANNMLDSIPGPLPL-SLRSLHLQNNMIETMEsdtfcDTGEH 290
Cdd:cd21340 101 -RLPPGEKLT-----------FDPRSLAALSNsLRVLNISGNNIDSLEPLAPLrNLEQLDASNNQISDLE-----ELLDL 163
|
170
....*....|....*..
gi 341941211 291 RHERRQLEDIRLDGNPI 307
Cdd:cd21340 164 LSSWPSLRELDLTGNPV 180
|
|
| LRR_8 |
pfam13855 |
Leucine rich repeat; |
152-209 |
5.82e-10 |
|
Leucine rich repeat;
Pssm-ID: 404697 [Multi-domain] Cd Length: 61 Bit Score: 54.45 E-value: 5.82e-10
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|....*...
gi 341941211 152 TYLYARFNHISHIQAGDFKGLTKLRRIDLSGNSISSIHNDALRLLPALQDLILPENQL 209
Cdd:pfam13855 4 RSLDLSNNRLTSLDDGAFKGLSNLKVLDLSNNLLTTLSPGAFSGLPSLRYLDLSGNRL 61
|
|
| PRK15370 |
PRK15370 |
type III secretion system effector E3 ubiquitin transferase SlrP; |
137-323 |
1.39e-09 |
|
type III secretion system effector E3 ubiquitin transferase SlrP;
Pssm-ID: 185268 [Multi-domain] Cd Length: 754 Bit Score: 59.33 E-value: 1.39e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 341941211 137 DDADLENIPP-LPQMTTYLYARFNHISHIQAG--DfkgltKLRRIDLSGNSISSIHNdalRLLPALQDLILPENQLAALP 213
Cdd:PRK15370 207 DNNELKSLPEnLQGNIKTLYANSNQLTSIPATlpD-----TIQEMELSINRITELPE---RLPSALQSLDLFHNKISCLP 278
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 341941211 214 -VLPSGIEFLDVRLNRLQS------SGI-----QPEAFVALKK-----LQFLYLANNMLDSIPGPLPLSLRSLHLQNNMI 276
Cdd:PRK15370 279 eNLPEELRYLSVYDNSIRTlpahlpSGIthlnvQSNSLTALPEtlppgLKTLEAGENALTSLPASLPPELQVLDVSKNQI 358
|
170 180 190 200
....*....|....*....|....*....|....*....|....*...
gi 341941211 277 eTMESDTFCDTGEHRHERRQLEdIRLDGN-PINLSLFPEAYFCLPRLP 323
Cdd:PRK15370 359 -TVLPETLPPTITTLDVSRNAL-TNLPENlPAALQIMQASRNNLVRLP 404
|
|
|
|
Name |
Accession |
Description |
Interval |
E-value |
| LRR |
COG4886 |
Leucine-rich repeat (LRR) protein [Transcription]; |
140-281 |
5.42e-14 |
|
Leucine-rich repeat (LRR) protein [Transcription];
Pssm-ID: 443914 [Multi-domain] Cd Length: 414 Bit Score: 72.27 E-value: 5.42e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 341941211 140 DLENIPPLPQMT--TYLYARFNHISHIQAgDFKGLTKLRRIDLSGNSISSIhNDALRLLPALQDLILPENQLAALPV--- 214
Cdd:COG4886 102 DLSGNEELSNLTnlESLDLSGNQLTDLPE-ELANLTNLKELDLSNNQLTDL-PEPLGNLTNLKSLDLSNNQLTDLPEelg 179
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 341941211 215 -LPSgIEFLDVRLNRLQSsgiQPEAFVALKKLQFLYLANNMLDSIPGPLPL--SLRSLHLQNNMIETMES 281
Cdd:COG4886 180 nLTN-LKELDLSNNQITD---LPEPLGNLTNLEELDLSGNQLTDLPEPLANltNLETLDLSNNQLTDLPE 245
|
|
| PPP1R42 |
cd21340 |
protein phosphatase 1 regulatory subunit 42; Protein phosphatase 1 regulatory subunit 42 ... |
135-307 |
2.33e-10 |
|
protein phosphatase 1 regulatory subunit 42; Protein phosphatase 1 regulatory subunit 42 (PPP1R42), also known as leucine-rich repeat-containing protein 67 (lrrc67) or testis leucine-rich repeat (TLRR) protein, plays a role in centrosome separation. PPP1R42 has been shown to interact with the well-conserved signaling protein phosphatase-1 (PP1) and thereby increasing PP1's activity, which counters centrosome separation. Inhibition of PPP1R42 expression increases the number of centrosomes per cell while its depletion reduces the activity of PP1 leading to activation of NEK2, the kinase responsible for phosphorylation of centrosomal linker proteins promoting centrosome separation.
Pssm-ID: 411060 [Multi-domain] Cd Length: 220 Bit Score: 59.41 E-value: 2.33e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 341941211 135 YCDDADLENIPPLPQMT--TYLYARFNHISHIQagDFKGLTKLRRIDLSGNSISSIHNdaLRLLPALQDLILpENQlaal 212
Cdd:cd21340 30 YLYDNKITKIENLEFLTnlTHLYLQNNQIEKIE--NLENLVNLKKLYLGGNRISVVEG--LENLTNLEELHI-ENQ---- 100
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 341941211 213 pVLPSGIEFLdvrlnrlqssgIQPEAFVALKK-LQFLYLANNMLDSIPGPLPL-SLRSLHLQNNMIETMEsdtfcDTGEH 290
Cdd:cd21340 101 -RLPPGEKLT-----------FDPRSLAALSNsLRVLNISGNNIDSLEPLAPLrNLEQLDASNNQISDLE-----ELLDL 163
|
170
....*....|....*..
gi 341941211 291 RHERRQLEDIRLDGNPI 307
Cdd:cd21340 164 LSSWPSLRELDLTGNPV 180
|
|
| LRR_8 |
pfam13855 |
Leucine rich repeat; |
152-209 |
5.82e-10 |
|
Leucine rich repeat;
Pssm-ID: 404697 [Multi-domain] Cd Length: 61 Bit Score: 54.45 E-value: 5.82e-10
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|....*...
gi 341941211 152 TYLYARFNHISHIQAGDFKGLTKLRRIDLSGNSISSIHNDALRLLPALQDLILPENQL 209
Cdd:pfam13855 4 RSLDLSNNRLTSLDDGAFKGLSNLKVLDLSNNLLTTLSPGAFSGLPSLRYLDLSGNRL 61
|
|
| PRK15370 |
PRK15370 |
type III secretion system effector E3 ubiquitin transferase SlrP; |
137-323 |
1.39e-09 |
|
type III secretion system effector E3 ubiquitin transferase SlrP;
Pssm-ID: 185268 [Multi-domain] Cd Length: 754 Bit Score: 59.33 E-value: 1.39e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 341941211 137 DDADLENIPP-LPQMTTYLYARFNHISHIQAG--DfkgltKLRRIDLSGNSISSIHNdalRLLPALQDLILPENQLAALP 213
Cdd:PRK15370 207 DNNELKSLPEnLQGNIKTLYANSNQLTSIPATlpD-----TIQEMELSINRITELPE---RLPSALQSLDLFHNKISCLP 278
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 341941211 214 -VLPSGIEFLDVRLNRLQS------SGI-----QPEAFVALKK-----LQFLYLANNMLDSIPGPLPLSLRSLHLQNNMI 276
Cdd:PRK15370 279 eNLPEELRYLSVYDNSIRTlpahlpSGIthlnvQSNSLTALPEtlppgLKTLEAGENALTSLPASLPPELQVLDVSKNQI 358
|
170 180 190 200
....*....|....*....|....*....|....*....|....*...
gi 341941211 277 eTMESDTFCDTGEHRHERRQLEdIRLDGN-PINLSLFPEAYFCLPRLP 323
Cdd:PRK15370 359 -TVLPETLPPTITTLDVSRNAL-TNLPENlPAALQIMQASRNNLVRLP 404
|
|
| LRR_8 |
pfam13855 |
Leucine rich repeat; |
173-255 |
3.28e-06 |
|
Leucine rich repeat;
Pssm-ID: 404697 [Multi-domain] Cd Length: 61 Bit Score: 44.05 E-value: 3.28e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 341941211 173 TKLRRIDLSGNSISSIHNDALRLLPALQDLILPENQLaalpvlpsgiefldvrlnrlqsSGIQPEAFVALKKLQFLYLAN 252
Cdd:pfam13855 1 PNLRSLDLSNNRLTSLDDGAFKGLSNLKVLDLSNNLL----------------------TTLSPGAFSGLPSLRYLDLSG 58
|
...
gi 341941211 253 NML 255
Cdd:pfam13855 59 NRL 61
|
|
| PRK15387 |
PRK15387 |
type III secretion system effector E3 ubiquitin transferase SspH2; |
141-279 |
5.79e-06 |
|
type III secretion system effector E3 ubiquitin transferase SspH2;
Pssm-ID: 185285 [Multi-domain] Cd Length: 788 Bit Score: 47.85 E-value: 5.79e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 341941211 141 LENIPPLPQMTTYLYARFNHISHIQAGDfKGLTKLRridLSGNSISSIHndalRLLPALQDLILPENQLAALPVLPSGIE 220
Cdd:PRK15387 254 LTSLPVLPPGLLELSIFSNPLTHLPALP-SGLCKLW---IFGNQLTSLP----VLPPGLQELSVSDNQLASLPALPSELC 325
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....*....
gi 341941211 221 FLDVRLNRLQSSGIQPEAfvalkkLQFLYLANNMLDSIPgPLPLSLRSLHLQNNMIETM 279
Cdd:PRK15387 326 KLWAYNNQLTSLPTLPSG------LQELSVSDNQLASLP-TLPSELYKLWAYNNRLTSL 377
|
|
| PRK15387 |
PRK15387 |
type III secretion system effector E3 ubiquitin transferase SspH2; |
138-282 |
1.50e-05 |
|
type III secretion system effector E3 ubiquitin transferase SspH2;
Pssm-ID: 185285 [Multi-domain] Cd Length: 788 Bit Score: 46.69 E-value: 1.50e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 341941211 138 DADLENIPPLPQMTTYLYARFNHISHIQAGDfkglTKLRRIDLSGNSISSI------------HNDALRLLPAL----QD 201
Cdd:PRK15387 311 DNQLASLPALPSELCKLWAYNNQLTSLPTLP----SGLQELSVSDNQLASLptlpselyklwaYNNRLTSLPALpsglKE 386
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 341941211 202 LILPENQLAALPVLPSGIEFLDVRLNRLQSSGIQPEAFVALKklqflyLANNMLDSIPGPLplslrsLHLQNNMIETMES 281
Cdd:PRK15387 387 LIVSGNRLTSLPVLPSELKELMVSGNRLTSLPMLPSGLLSLS------VYRNQLTRLPESL------IHLSSETTVNLEG 454
|
.
gi 341941211 282 D 282
Cdd:PRK15387 455 N 455
|
|
| LRR_8 |
pfam13855 |
Leucine rich repeat; |
222-276 |
1.92e-05 |
|
Leucine rich repeat;
Pssm-ID: 404697 [Multi-domain] Cd Length: 61 Bit Score: 41.74 E-value: 1.92e-05
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|....*....
gi 341941211 222 LDVRLNRLQSsgIQPEAFVALKKLQFLYLANNMLDSIPG----PLPlSLRSLHLQNNMI 276
Cdd:pfam13855 6 LDLSNNRLTS--LDDGAFKGLSNLKVLDLSNNLLTTLSPgafsGLP-SLRYLDLSGNRL 61
|
|
| LRR |
COG4886 |
Leucine-rich repeat (LRR) protein [Transcription]; |
133-278 |
6.47e-05 |
|
Leucine-rich repeat (LRR) protein [Transcription];
Pssm-ID: 443914 [Multi-domain] Cd Length: 414 Bit Score: 44.15 E-value: 6.47e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 341941211 133 SVYCDDADLENIPPLPQMT--TYLYARFNHISHIqaGDFKGLTKLRRIDLSGNSISSIHNDALRLLPALQDLILPENQLA 210
Cdd:COG4886 232 TLDLSNNQLTDLPELGNLTnlEELDLSNNQLTDL--PPLANLTNLKTLDLSNNQLTDLKLKELELLLGLNSLLLLLLLLN 309
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 341941211 211 ALPVLPSGIEFLDVRLNRLQSSGIQPEAFVALKKLQFLYLANNMLDSIPGPLPLSLRSLHLQNNMIET 278
Cdd:COG4886 310 LLELLILLLLLTTLLLLLLLLKGLLVTLTTLALSLSLLALLTLLLLLNLLSLLLTLLLTLGLLGLLEA 377
|
|
| PRK15387 |
PRK15387 |
type III secretion system effector E3 ubiquitin transferase SspH2; |
172-279 |
1.73e-04 |
|
type III secretion system effector E3 ubiquitin transferase SspH2;
Pssm-ID: 185285 [Multi-domain] Cd Length: 788 Bit Score: 43.23 E-value: 1.73e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 341941211 172 LTKLRRIDLSGNSISSIHNDALRLLP-----ALQDLILPENQLAALPVLPSGIEFLDVRLNRLQSSGIQPEAFVAL---- 242
Cdd:PRK15387 192 VQKMRACLNNGNAVLNVGESGLTTLPdclpaHITTLVIPDNNLTSLPALPPELRTLEVSGNQLTSLPVLPPGLLELsifs 271
|
90 100 110 120
....*....|....*....|....*....|....*....|....*..
gi 341941211 243 ----------KKLQFLYLANNMLDSIPgPLPLSLRSLHLQNNMIETM 279
Cdd:PRK15387 272 nplthlpalpSGLCKLWIFGNQLTSLP-VLPPGLQELSVSDNQLASL 317
|
|
| LRR_RI |
cd00116 |
Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 ... |
169-307 |
2.04e-03 |
|
Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Pssm-ID: 238064 [Multi-domain] Cd Length: 319 Bit Score: 39.26 E-value: 2.04e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 341941211 169 FKGLTKLRRIDLSGNSIsSIHN----DALRLLPALQDLILPENQLA---------ALPVLPSGIEFLDVRLNRLQSSGIQ 235
Cdd:cd00116 77 LTKGCGLQELDLSDNAL-GPDGcgvlESLLRSSSLQELKLNNNGLGdrglrllakGLKDLPPALEKLVLGRNRLEGASCE 155
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 341941211 236 P--EAFVALKKLQFLYLANNML--DSIP-----GPLPLSLRSLHLQNNMIETMESDTFCDTGEHrheRRQLEDIRLDGNP 306
Cdd:cd00116 156 AlaKALRANRDLKELNLANNGIgdAGIRalaegLKANCNLEVLDLNNNGLTDEGASALAETLAS---LKSLEVLNLGDNN 232
|
.
gi 341941211 307 I 307
Cdd:cd00116 233 L 233
|
|
| PPP1R42 |
cd21340 |
protein phosphatase 1 regulatory subunit 42; Protein phosphatase 1 regulatory subunit 42 ... |
243-280 |
7.03e-03 |
|
protein phosphatase 1 regulatory subunit 42; Protein phosphatase 1 regulatory subunit 42 (PPP1R42), also known as leucine-rich repeat-containing protein 67 (lrrc67) or testis leucine-rich repeat (TLRR) protein, plays a role in centrosome separation. PPP1R42 has been shown to interact with the well-conserved signaling protein phosphatase-1 (PP1) and thereby increasing PP1's activity, which counters centrosome separation. Inhibition of PPP1R42 expression increases the number of centrosomes per cell while its depletion reduces the activity of PP1 leading to activation of NEK2, the kinase responsible for phosphorylation of centrosomal linker proteins promoting centrosome separation.
Pssm-ID: 411060 [Multi-domain] Cd Length: 220 Bit Score: 37.46 E-value: 7.03e-03
10 20 30
....*....|....*....|....*....|....*....
gi 341941211 243 KKLQFLYLANNMLDSIPGPLPLS-LRSLHLQNNMIETME 280
Cdd:cd21340 24 KNLKVLYLYDNKITKIENLEFLTnLTHLYLQNNQIEKIE 62
|
|
| LRR_4 |
pfam12799 |
Leucine Rich repeats (2 copies); Leucine rich repeats are short sequence motifs present in a ... |
243-274 |
9.80e-03 |
|
Leucine Rich repeats (2 copies); Leucine rich repeats are short sequence motifs present in a number of proteins with diverse functions and cellular locations. These repeats are usually involved in protein-protein interactions. Each Leucine Rich Repeat is composed of a beta-alpha unit. These units form elongated non-globular structures. Leucine Rich Repeats are often flanked by cysteine rich domains.
Pssm-ID: 463713 [Multi-domain] Cd Length: 44 Bit Score: 33.76 E-value: 9.80e-03
10 20 30
....*....|....*....|....*....|...
gi 341941211 243 KKLQFLYLANNMLDSIPGPLPL-SLRSLHLQNN 274
Cdd:pfam12799 1 PNLEVLDLSNNQITDIPPLAKLpNLETLDLSGN 33
|
|
|