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Conserved domains on  [gi|341940830|sp|Q64282|]
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RecName: Full=Interferon-induced protein with tetratricopeptide repeats 1; Short=IFIT-1; AltName: Full=Glucocorticoid-attenuated response gene 16 protein; Short=GARG-16; AltName: Full=Interferon-induced 56 kDa protein; Short=IFI-56K; Short=P56

Protein Classification

tetratricopeptide repeat protein( domain architecture ID 18770923)

tetratricopeptide repeat (TPR) protein may adopt a right-handed helical structure with an amphipathic channel and may function as an interaction scaffold in the formation of multi-protein complexes

CATH:  1.25.40.10
Gene Ontology:  GO:0005515
PubMed:  30708253|22404999|21153002
SCOP:  4001344

Graphical summary

 Zoom to residue level

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List of domain hits

 Name Accession Description Interval E-value
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
 152-396 2.55e-16

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


:

Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 79.00  E-value: 2.55e-16
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 341940830 152 GNYKQAMACFAKALKVEPENPEYNTGYAVVAYRQDLDDNFISLepLRKAVRLNPEDPYLKVLLALKLQDLGEHVEAEAHI 231
Cdd:COG2956   22 GQPDKAIDLLEEALELDPETVEAHLALGNLYRRRGEYDRAIRI--HQKLLERDPDRAEALLELAQDYLKAGLLDRAEELL 99

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 341940830 232 EEALSSTSCQSYVIRYAAKYFRRKHRVDKALHLLNRALQASPSSGYLHYQKGLCYKQQ------ISQLRTSRNRQPRRQD 305
Cdd:COG2956  100 EKLLELDPDDAEALRLLAEIYEQEGDWEKAIEVLERLLKLGPENAHAYCELAELYLEQgdydeaIEALEKALKLDPDCAR 179

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 341940830 306 NVQELAQ---------QAIHEFQETLKLRPTFEMAYVCMAEVQAEIHQYEEAERNFQKALNNktlvaHIEQDIHLRYGRF 376
Cdd:COG2956  180 ALLLLAElyleqgdyeEAIAALERALEQDPDYLPALPRLAELYEKLGDPEEALELLRKALEL-----DPSDDLLLALADL 254

                        250       260
                 ....*....|....*....|
gi 341940830 377 LQfHKQSEDKAITLYLKGLK 396
Cdd:COG2956  255 LE-RKEGLEAALALLERQLR 273
BepA COG4783
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ...
 58-207 3.49e-06

Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];


:

Pssm-ID: 443813 [Multi-domain]  Cd Length: 139  Bit Score: 46.34  E-value: 3.49e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 341940830  58 LAYVRHLKGQQDEALQSLKEAEaliqseQLSKRSLATWGNCAWLHYHRGSLAEAQIYLDKVEKVCKEfSSPFRYRLecae 137
Cdd:COG4783   10 LAQALLLAGDYDEAEALLEKAL------ELDPDNPEAFALLGEILLQLGDLDEAIVLLHEALELDPD-EPEARLNL---- 78

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 341940830 138 mdceeGWALLKCggGNYKQAMACFAKALKVEPENPEYNTGYAVVAYRQDLDDNFISLepLRKAVRLNPED 207
Cdd:COG4783   79 -----GLALLKA--GDYDEALALLEKALKLDPEHPEAYLRLARAYRALGRPDEAIAA--LEKALELDPDD 139
 
Name Accession Description Interval E-value
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
 152-396 2.55e-16

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 79.00  E-value: 2.55e-16
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 341940830 152 GNYKQAMACFAKALKVEPENPEYNTGYAVVAYRQDLDDNFISLepLRKAVRLNPEDPYLKVLLALKLQDLGEHVEAEAHI 231
Cdd:COG2956   22 GQPDKAIDLLEEALELDPETVEAHLALGNLYRRRGEYDRAIRI--HQKLLERDPDRAEALLELAQDYLKAGLLDRAEELL 99

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 341940830 232 EEALSSTSCQSYVIRYAAKYFRRKHRVDKALHLLNRALQASPSSGYLHYQKGLCYKQQ------ISQLRTSRNRQPRRQD 305
Cdd:COG2956  100 EKLLELDPDDAEALRLLAEIYEQEGDWEKAIEVLERLLKLGPENAHAYCELAELYLEQgdydeaIEALEKALKLDPDCAR 179

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 341940830 306 NVQELAQ---------QAIHEFQETLKLRPTFEMAYVCMAEVQAEIHQYEEAERNFQKALNNktlvaHIEQDIHLRYGRF 376
Cdd:COG2956  180 ALLLLAElyleqgdyeEAIAALERALEQDPDYLPALPRLAELYEKLGDPEEALELLRKALEL-----DPSDDLLLALADL 254

                        250       260
                 ....*....|....*....|
gi 341940830 377 LQfHKQSEDKAITLYLKGLK 396
Cdd:COG2956  255 LE-RKEGLEAALALLERQLR 273
PEP_TPR_lipo TIGR02917
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ...
 152-462 8.87e-07

putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.


Pssm-ID: 274350 [Multi-domain]  Cd Length: 899  Bit Score: 51.62  E-value: 8.87e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 341940830  152 GNYKQAMACFAKALKVEPENPEYNTGYAVVAYRQ-DLDDnfiSLEPLRKAVRLNPEDPYLKVLLALKLQDLGEHVEAEAH 230
Cdd:TIGR02917 241 GEFEEAEKHADALLKKAPNSPLAHYLKALVDFQKkNYED---ARETLQDALKSAPEYLPALLLAGASEYQLGNLEQAYQY 317

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 341940830  231 IEEALSSTSCQSYVIRYAAKYFRRKHRVDKALHLLNRALQASP-------SSGYLH-----YQKGLCYKQQISQLrTSRN 298
Cdd:TIGR02917 318 LNQILKYAPNSHQARRLLASIQLRLGRVDEAIATLSPALGLDPddpaalsLLGEAYlalgdFEKAAEYLAKATEL-DPEN 396

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 341940830  299 RQPRRQDNVQELAQ----QAIHEFQETLKLRPTFEMAYVCMAEVQAEIHQYEEA---ERNFQKALNNKTLVAHIEQDIHL 371
Cdd:TIGR02917 397 AAARTQLGISKLSQgdpsEAIADLETAAQLDPELGRADLLLILSYLRSGQFDKAlaaAKKLEKKQPDNASLHNLLGAIYL 476

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 341940830  372 RygrflqfhKQSEDKAITLYLKGLKVEEKSFAWRKLLTALE----------KVAERRVCQNVHLVESTSLLGLVYKLKGQ 441
Cdd:TIGR02917 477 G--------KGDLAKAREAFEKALSIEPDFFPAAANLARIDiqegnpddaiQRFEKVLTIDPKNLRAILALAGLYLRTGN 548

                         330       340
                  ....*....|....*....|..
gi 341940830  442 EKNALFYYEKALRL-TGEMNPA 462
Cdd:TIGR02917 549 EEEAVAWLEKAAELnPQEIEPA 570
BepA COG4783
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ...
 58-207 3.49e-06

Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443813 [Multi-domain]  Cd Length: 139  Bit Score: 46.34  E-value: 3.49e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 341940830  58 LAYVRHLKGQQDEALQSLKEAEaliqseQLSKRSLATWGNCAWLHYHRGSLAEAQIYLDKVEKVCKEfSSPFRYRLecae 137
Cdd:COG4783   10 LAQALLLAGDYDEAEALLEKAL------ELDPDNPEAFALLGEILLQLGDLDEAIVLLHEALELDPD-EPEARLNL---- 78

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 341940830 138 mdceeGWALLKCggGNYKQAMACFAKALKVEPENPEYNTGYAVVAYRQDLDDNFISLepLRKAVRLNPED 207
Cdd:COG4783   79 -----GLALLKA--GDYDEALALLEKALKLDPEHPEAYLRLARAYRALGRPDEAIAA--LEKALELDPDD 139
PEP_TPR_lipo TIGR02917
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ...
 25-235 9.53e-04

putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.


Pssm-ID: 274350 [Multi-domain]  Cd Length: 899  Bit Score: 41.61  E-value: 9.53e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 341940830   25 LLFENNDiPDLEVRISEQVQFLDIKNPLGmHNLLAYVRHLKGQQDEALQSLKEA--------------EALIQSEQLSK- 89
Cdd:TIGR02917 678 LLLAAKR-TESAKKIAKSLQKQHPKAALG-FELEGDLYLRQKDYPAAIQAYRKAlkrapssqnaiklhRALLASGNTAEa 755

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 341940830   90 -RSLATW----GNCAWLHYHRGSLAEAQIYLDKVEKVckefsspFRYRLECAEMDC----EEGWALLKcggGNYKQAMAC 160
Cdd:TIGR02917 756 vKTLEAWlkthPNDAVLRTALAELYLAQKDYDKAIKH-------YQTVVKKAPDNAvvlnNLAWLYLE---LKDPRALEY 825

                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 341940830  161 FAKALKVEPENPEYNTGYAVVAYRQDLDDNFISLepLRKAVRLNPEDPYLKVLLALKLQDLGEHVEAEAHIEEAL 235
Cdd:TIGR02917 826 AERALKLAPNIPAILDTLGWLLVEKGEADRALPL--LRKAVNIAPEAAAIRYHLALALLATGRKAEARKELDKLL 898
PRK11447 PRK11447
cellulose synthase subunit BcsC; Provisional
 207-356 2.74e-03

cellulose synthase subunit BcsC; Provisional


Pssm-ID: 183140 [Multi-domain]  Cd Length: 1157  Bit Score: 40.45  E-value: 2.74e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 341940830  207 DP-YLKVLLALKLQDLGEHVEAEAHIEEALSSTSCQSYVI-RYAAKYFRRKHRvDKALHLLNRALQASPSSgylhYQKGl 284
Cdd:PRK11447  267 DPaFRARAQGLAAVDSGQGGKAIPELQQAVRANPKDSEALgALGQAYSQQGDR-ARAVAQFEKALALDPHS----SNRD- 340

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 341940830  285 cyKQQiSQLRTSR----NRQPRRQDNVQELAQqAIHEFQETLKLRPTFEMAYVCMAEVQAEIHQYEEAERNFQKAL 356
Cdd:PRK11447  341 --KWE-SLLKVNRywllIQQGDAALKANNLAQ-AERLYQQARQVDNTDSYAVLGLGDVAMARKDYAAAERYYQQAL 412
 
Name Accession Description Interval E-value
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
 152-396 2.55e-16

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 79.00  E-value: 2.55e-16
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 341940830 152 GNYKQAMACFAKALKVEPENPEYNTGYAVVAYRQDLDDNFISLepLRKAVRLNPEDPYLKVLLALKLQDLGEHVEAEAHI 231
Cdd:COG2956   22 GQPDKAIDLLEEALELDPETVEAHLALGNLYRRRGEYDRAIRI--HQKLLERDPDRAEALLELAQDYLKAGLLDRAEELL 99

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 341940830 232 EEALSSTSCQSYVIRYAAKYFRRKHRVDKALHLLNRALQASPSSGYLHYQKGLCYKQQ------ISQLRTSRNRQPRRQD 305
Cdd:COG2956  100 EKLLELDPDDAEALRLLAEIYEQEGDWEKAIEVLERLLKLGPENAHAYCELAELYLEQgdydeaIEALEKALKLDPDCAR 179

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 341940830 306 NVQELAQ---------QAIHEFQETLKLRPTFEMAYVCMAEVQAEIHQYEEAERNFQKALNNktlvaHIEQDIHLRYGRF 376
Cdd:COG2956  180 ALLLLAElyleqgdyeEAIAALERALEQDPDYLPALPRLAELYEKLGDPEEALELLRKALEL-----DPSDDLLLALADL 254

                        250       260
                 ....*....|....*....|
gi 341940830 377 LQfHKQSEDKAITLYLKGLK 396
Cdd:COG2956  255 LE-RKEGLEAALALLERQLR 273
Spy COG3914
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ...
 62-281 3.54e-13

Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443119 [Multi-domain]  Cd Length: 658  Bit Score: 71.56  E-value: 3.54e-13
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 341940830  62 RHLKGQQDEALQSLKEAEALIQSEQLSKRSLATWGNCAWLHYHRGSLAEAQIYLDKVEKVCKEFSSPFRYRLECAEMDCE 141
Cdd:COG3914    4 AALLALAALAAAALLAAAAAAELALAAELEAAALAAALGLALLLLAALAEAAAAALLALAAGEAAAAAAALLLLAALLEL 83

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 341940830 142 EGWALLKCGggNYKQAMACFAKALKVEPENPEYNTGYAVVAYRQDLDDNfiSLEPLRKAVRLNPEDPYLKVLLALKLQDL 221
Cdd:COG3914   84 AALLLQALG--RYEEALALYRRALALNPDNAEALFNLGNLLLALGRLEE--ALAALRRALALNPDFAEAYLNLGEALRRL 159

                        170       180       190       200       210       220
                 ....*....|....*....|....*....|....*....|....*....|....*....|
gi 341940830 222 GEHVEAEAHIEEALSSTSCQSYVIRYAAKYFRRKHRVDKALHLLNRALQASPSSGYLHYQ 281
Cdd:COG3914  160 GRLEEAIAALRRALELDPDNAEALNNLGNALQDLGRLEEAIAAYRRALELDPDNADAHSN 219
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
165-417 4.54e-12

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 65.80  E-value: 4.54e-12
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 341940830 165 LKVEPENPEYNTGYAVVAYRQDLDDNfiSLEPLRKAVRLNPEDPYLKVLLALKLQDLGEHVEAEAHIEEALSSTSCQSYV 244
Cdd:COG0457    1 LELDPDDAEAYNNLGLAYRRLGRYEE--AIEDYEKALELDPDDAEALYNLGLAYLRLGRYEEALADYEQALELDPDDAEA 78

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 341940830 245 IRYAAKYFRRKHRVDKALHLLNRALQASPSSGYLHYQKGLCYKQQisqlrtsrnrqprrqdnvqELAQQAIHEFQETLKL 324
Cdd:COG0457   79 LNNLGLALQALGRYEEALEDYDKALELDPDDAEALYNLGLALLEL-------------------GRYDEAIEAYERALEL 139

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 341940830 325 RPTFEMAYVCMAEVQAEIHQYEEAERNFQKALNNKTLVAHIEQDIHLRYGRFLQFHKQSEDKAITLYLKGLKVEEKSFAW 404
Cdd:COG0457  140 DPDDADALYNLGIALEKLGRYEEALELLEKLEAAALAALLAAALGEAALALAAAEVLLALLLALEQALRKKLAILTLAAL 219

                        250
                 ....*....|...
gi 341940830 405 RKLLTALEKVAER 417
Cdd:COG0457  220 AELLLLALALLLA 232
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
 247-456 7.09e-12

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 65.52  E-value: 7.09e-12
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 341940830 247 YAAKYFRRKHRVDKALHLLNRALQASPSSGYLHYQKGLCYKQQ------ISQLRTSRNRQPRRQDNVQELAQ-------- 312
Cdd:COG2956   13 FKGLNYLLNGQPDKAIDLLEEALELDPETVEAHLALGNLYRRRgeydraIRIHQKLLERDPDRAEALLELAQdylkagll 92

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 341940830 313 -QAIHEFQETLKLRPTFEMAYVCMAEVQAEIHQYEEAERNFQKALNNKTLVAHIeqdiHLRYGRfLQFHKQSEDKAITLY 391
Cdd:COG2956   93 dRAEELLEKLLELDPDDAEALRLLAEIYEQEGDWEKAIEVLERLLKLGPENAHA----YCELAE-LYLEQGDYDEAIEAL 167

                        170       180       190       200       210       220       230
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 341940830 392 LKGLKVEEKSFA--------------WRKLLTALEKVAErrvcQNVHLVESTSLLGLVYKLKGQEKNALFYYEKALRLT 456
Cdd:COG2956  168 EKALKLDPDCARallllaelyleqgdYEEAIAALERALE----QDPDYLPALPRLAELYEKLGDPEEALELLRKALELD 242
Spy COG3914
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ...
 182-384 1.63e-10

Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443119 [Multi-domain]  Cd Length: 658  Bit Score: 63.09  E-value: 1.63e-10
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 341940830 182 AYRQDLDDNFISLEPLRKAVRLNPEDPYLKVLLALKLQDLGEHVEAEAHIEEALSSTSCQSYVIRYAAKYFRRKHRVDKA 261
Cdd:COG3914   86 LLLQALGRYEEALALYRRALALNPDNAEALFNLGNLLLALGRLEEALAALRRALALNPDFAEAYLNLGEALRRLGRLEEA 165

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 341940830 262 LHLLNRALQASPSSGYLHYQKGLCYKQqisqlrtsrnrqprrqdnvQELAQQAIHEFQETLKLRPTFEMAY--------- 332
Cdd:COG3914  166 IAALRRALELDPDNAEALNNLGNALQD-------------------LGRLEEAIAAYRRALELDPDNADAHsnllfalrq 226

                        170       180       190       200       210
                 ....*....|....*....|....*....|....*....|....*....|....*...
gi 341940830 333 VCMAEVQAEIHQYEEAERNFQKALNNKTLVAHIEQD------IHLRYGRFLQFHKQSE 384
Cdd:COG3914  227 ACDWEVYDRFEELLAALARGPSELSPFALLYLPDDDpaellaLARAWAQLVAAAAAPE 284
NrfG COG4235
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ...
 152-236 2.13e-10

Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443378 [Multi-domain]  Cd Length: 131  Bit Score: 58.48  E-value: 2.13e-10
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 341940830 152 GNYKQAMACFAKALKVEPENPEYNTGYAVVAYRQDLDDNFISLepLRKAVRLNPEDPYLKVLLALKLQDLGEHVEAEAHI 231
Cdd:COG4235   31 GRYDEALAAYEKALRLDPDNADALLDLAEALLAAGDTEEAEEL--LERALALDPDNPEALYLLGLAAFQQGDYAEAIAAW 108


                 ....*
gi 341940830 232 EEALS 236
Cdd:COG4235  109 QKLLA 113
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
 64-357 2.28e-10

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 61.28  E-value: 2.28e-10
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 341940830  64 LKGQQDEALQSLKEAEALIQSEQLSKRSLATwgncawLHYHRGSLAEAQIYLDKVEKVCKEFsspFRYRLECAEMdceeg 143
Cdd:COG2956   20 LNGQPDKAIDLLEEALELDPETVEAHLALGN------LYRRRGEYDRAIRIHQKLLERDPDR---AEALLELAQD----- 85

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 341940830 144 waLLKcgGGNYKQAMACFAKALKVEPENPEYNTGYAVVAYRQ-DLDDnfiSLEPLRKAVRLNPEDPYLKVLLALKLQDLG 222
Cdd:COG2956   86 --YLK--AGLLDRAEELLEKLLELDPDDAEALRLLAEIYEQEgDWEK---AIEVLERLLKLGPENAHAYCELAELYLEQG 158

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 341940830 223 EHVEAEAHIEEALSSTSCQSYVIRYAAKYFRRKHRVDKALHLLNRALQASPSSGYLHYQKGLCYKQqisqlrtsrnrqpr 302
Cdd:COG2956  159 DYDEAIEALEKALKLDPDCARALLLLAELYLEQGDYEEAIAALERALEQDPDYLPALPRLAELYEK-------------- 224

                        250       260       270       280       290
                 ....*....|....*....|....*....|....*....|....*....|....*
gi 341940830 303 rqdnvQELAQQAIHEFQETLKLRPTfEMAYVCMAEVQAEIHQYEEAERNFQKALN 357
Cdd:COG2956  225 -----LGDPEEALELLRKALELDPS-DDLLLALADLLERKEGLEAALALLERQLR 273
BepA COG4783
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ...
 152-273 3.60e-10

Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443813 [Multi-domain]  Cd Length: 139  Bit Score: 57.89  E-value: 3.60e-10
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 341940830 152 GNYKQAMACFAKALKVEPENPEYNTGYAVVAYRQ-DLDDnfiSLEPLRKAVRLNPEDPYLKVLLALKLQDLGEHVEAEAH 230
Cdd:COG4783   18 GDYDEAEALLEKALELDPDNPEAFALLGEILLQLgDLDE---AIVLLHEALELDPDEPEARLNLGLALLKAGDYDEALAL 94

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|...
gi 341940830 231 IEEALSSTSCQSYVIRYAAKYFRRKHRVDKALHLLNRALQASP 273
Cdd:COG4783   95 LEKALKLDPEHPEAYLRLARAYRALGRPDEAIAALEKALELDP 137
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
 55-271 6.17e-10

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 59.74  E-value: 6.17e-10
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 341940830  55 HNLLAYVRHLKGQQDEALQSLKEAEALIQSEQLSKRSLATwgncawLHYHRGSLAEAQIYLDKVEKVCKEfSSPFRYRLe 134
Cdd:COG2956   79 LLELAQDYLKAGLLDRAEELLEKLLELDPDDAEALRLLAE------IYEQEGDWEKAIEVLERLLKLGPE-NAHAYCEL- 150

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 341940830 135 caemdceegwALLKCGGGNYKQAMACFAKALKVEPENPEYNTGYAVVAYRQDLDDNFISLepLRKAVRLNPEDPYLKVLL 214
Cdd:COG2956  151 ----------AELYLEQGDYDEAIEALEKALKLDPDCARALLLLAELYLEQGDYEEAIAA--LERALEQDPDYLPALPRL 218

                        170       180       190       200       210
                 ....*....|....*....|....*....|....*....|....*....|....*..
gi 341940830 215 ALKLQDLGEHVEAEAHIEEALSSTScQSYVIRYAAKYFRRKHRVDKALHLLNRALQA 271
Cdd:COG2956  219 AELYEKLGDPEEALELLRKALELDP-SDDLLLALADLLERKEGLEAALALLERQLRR 274
Spy COG3914
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ...
 152-281 8.98e-10

Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443119 [Multi-domain]  Cd Length: 658  Bit Score: 60.78  E-value: 8.98e-10
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 341940830 152 GNYKQAMACFAKALKVEPENPEYNTGYAVVAYRQDLDDNFISLepLRKAVRLNPEDPYLKVLLALKLQDLGEHVEAEAHI 231
Cdd:COG3914  126 GRLEEALAALRRALALNPDFAEAYLNLGEALRRLGRLEEAIAA--LRRALELDPDNAEALNNLGNALQDLGRLEEAIAAY 203

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|....*.
gi 341940830 232 EEALSSTSCQSYV------IRYAAKYFRRKHRVDKALHLLNRAlQASPSSGYLHYQ 281
Cdd:COG3914  204 RRALELDPDNADAhsnllfALRQACDWEVYDRFEELLAALARG-PSELSPFALLYL 258
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
55-262 2.02e-09

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 58.09  E-value: 2.02e-09
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 341940830  55 HNLLAYVRHLKGQQDEALQSLKEAEAliqseqLSKRSLATWGNCAWLHYHRGSLAEAQIYLDKVEKVCKEFSSPFRYRle 134
Cdd:COG0457   11 YNNLGLAYRRLGRYEEAIEDYEKALE------LDPDDAEALYNLGLAYLRLGRYEEALADYEQALELDPDDAEALNNL-- 82

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 341940830 135 caemdceeGWALLKCggGNYKQAMACFAKALKVEPENPEYNTGYAVVAYRQDLDDNfiSLEPLRKAVRLNPEDPYLKVLL 214
Cdd:COG0457   83 --------GLALQAL--GRYEEALEDYDKALELDPDDAEALYNLGLALLELGRYDE--AIEAYERALELDPDDADALYNL 150

                        170       180       190       200
                 ....*....|....*....|....*....|....*....|....*...
gi 341940830 215 ALKLQDLGEHVEAEAHIEEALSSTSCQSYVIRYAAKYFRRKHRVDKAL 262
Cdd:COG0457  151 GIALEKLGRYEEALELLEKLEAAALAALLAAALGEAALALAAAEVLLA 198
BepA COG4783
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ...
 99-236 1.45e-08

Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443813 [Multi-domain]  Cd Length: 139  Bit Score: 53.27  E-value: 1.45e-08
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 341940830  99 AWLHYHRGSLAEAQIYLDKVEKVCKEFSSPFRYRlecaemdceeGWALLKcgGGNYKQAMACFAKALKVEPENPEYNTGY 178
Cdd:COG4783   11 AQALLLAGDYDEAEALLEKALELDPDNPEAFALL----------GEILLQ--LGDLDEAIVLLHEALELDPDEPEARLNL 78

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|....*...
gi 341940830 179 AVVAYRQDLDDNfiSLEPLRKAVRLNPEDPYLKVLLALKLQDLGEHVEAEAHIEEALS 236
Cdd:COG4783   79 GLALLKAGDYDE--ALALLEKALKLDPEHPEAYLRLARAYRALGRPDEAIAALEKALE 134
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
94-325 1.68e-08

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 55.40  E-value: 1.68e-08
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 341940830  94 TWGNCAWLHYHRGSLAEAQIYLDKVEKVCKEFSSPFRYRlecaemdceeGWALLKCGggNYKQAMACFAKALKVEPENPE 173
Cdd:COG0457   10 AYNNLGLAYRRLGRYEEAIEDYEKALELDPDDAEALYNL----------GLAYLRLG--RYEEALADYEQALELDPDDAE 77

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 341940830 174 YNTGYAVVAYRQDLDDNfiSLEPLRKAVRLNPEDPYLKVLLALKLQDLGEHVEAEAHIEEALSSTSCQSYVIRYAAKYFR 253
Cdd:COG0457   78 ALNNLGLALQALGRYEE--ALEDYDKALELDPDDAEALYNLGLALLELGRYDEAIEAYERALELDPDDADALYNLGIALE 155

                        170       180       190       200       210       220       230
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 341940830 254 RKHRVDKALHLLNRALQASPSSGYLHYQKGLCYKQQISQLRTSRNRQPRRQDNVQELAQQAIHEFQETLKLR 325
Cdd:COG0457  156 KLGRYEEALELLEKLEAAALAALLAAALGEAALALAAAEVLLALLLALEQALRKKLAILTLAALAELLLLAL 227
PilF COG3063
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
152-236 2.61e-08

Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];


Pssm-ID: 442297 [Multi-domain]  Cd Length: 94  Bit Score: 51.32  E-value: 2.61e-08
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 341940830 152 GNYKQAMACFAKALKVEPENPEYNTGYAVVAYRQdldDNFISLEPLRKAVRLNPEDPYLKVLLALKLQDLGEHVEAEAHI 231
Cdd:COG3063    6 GDLEEAEEYYEKALELDPDNADALNNLGLLLLEQ---GRYDEAIALEKALKLDPNNAEALLNLAELLLELGDYDEALAYL 82


                 ....*
gi 341940830 232 EEALS 236
Cdd:COG3063   83 ERALE 87
BepA COG4783
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ...
 197-289 7.31e-08

Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443813 [Multi-domain]  Cd Length: 139  Bit Score: 51.35  E-value: 7.31e-08
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 341940830 197 LRKAVRLNPEDPYLKVLLALKLQDLGEHVEAEAHIEEALSSTSCQSYVIRYAAKYFRRKHRVDKALHLLNRALQASPSSG 276
Cdd:COG4783   27 LEKALELDPDNPEAFALLGEILLQLGDLDEAIVLLHEALELDPDEPEARLNLGLALLKAGDYDEALALLEKALKLDPEHP 106

                         90
                 ....*....|...
gi 341940830 277 YLHYQKGLCYKQQ 289
Cdd:COG4783  107 EAYLRLARAYRAL 119
NrfG COG4235
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ...
 156-275 8.63e-08

Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443378 [Multi-domain]  Cd Length: 131  Bit Score: 50.77  E-value: 8.63e-08
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 341940830 156 QAMACFAKALKVEPENPEYNTGYAVVAYRQ-DLDDnfiSLEPLRKAVRLNPEDPYLKVLLALKLQDLGEHVEAEAHIEEA 234
Cdd:COG4235    1 EAIARLRQALAANPNDAEGWLLLGRAYLRLgRYDE---ALAAYEKALRLDPDNADALLDLAEALLAAGDTEEAEELLERA 77

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|.
gi 341940830 235 LSSTSCQSYVIRYAAKYFRRKHRVDKALHLLNRALQASPSS 275
Cdd:COG4235   78 LALDPDNPEALYLLGLAAFQQGDYAEAIAAWQKLLALLPAD 118
BepA COG4783
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ...
 214-356 1.42e-07

Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443813 [Multi-domain]  Cd Length: 139  Bit Score: 50.58  E-value: 1.42e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 341940830 214 LALKLQDLGEHVEAEAHIEEALSSTSCQSYVIRYAAKYFRRKHRVDKALHLLNRALQASPSSGYLHYQKGLCYKQqisql 293
Cdd:COG4783   10 LAQALLLAGDYDEAEALLEKALELDPDNPEAFALLGEILLQLGDLDEAIVLLHEALELDPDEPEARLNLGLALLK----- 84

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 341940830 294 rtsrnrqprrqdnvQELAQQAIHEFQETLKLRPTFEMAYVCMAEVQAEIHQYEEAERNFQKAL 356
Cdd:COG4783   85 --------------AGDYDEALALLEKALKLDPEHPEAYLRLARAYRALGRPDEAIAALEKAL 133
Spy COG3914
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ...
 248-455 5.80e-07

Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443119 [Multi-domain]  Cd Length: 658  Bit Score: 51.92  E-value: 5.80e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 341940830 248 AAKYFRRKHRVDKALHLLNRALQASPSSGYLHYQKGLCYKQQISQLRTSRNRQPRRQDNVQElaqqAIHEFQETLKLRPT 327
Cdd:COG3914   35 AALAAALGLALLLLAALAEAAAAALLALAAGEAAAAAAALLLLAALLELAALLLQALGRYEE----ALALYRRALALNPD 110

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 341940830 328 FEMAYVCMAEVQAEIHQYEEAERNFQKALNNKTLVAhieqDIHLRYGRFLQFHKQSEDkAITLYLKGLKVEEksfawrKL 407
Cdd:COG3914  111 NAEALFNLGNLLLALGRLEEALAALRRALALNPDFA----EAYLNLGEALRRLGRLEE-AIAALRRALELDP------DN 179

                        170       180       190       200
                 ....*....|....*....|....*....|....*....|....*...
gi 341940830 408 LTALekvaerrvcqnvhlvestSLLGLVYKLKGQEKNALFYYEKALRL 455
Cdd:COG3914  180 AEAL------------------NNLGNALQDLGRLEEAIAAYRRALEL 209
TadD COG5010
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ...
 152-235 7.33e-07

Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];


Pssm-ID: 444034 [Multi-domain]  Cd Length: 155  Bit Score: 48.80  E-value: 7.33e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 341940830 152 GNYKQAMACFAKALKVEPENPEYNTGYAVVAYRQ-DLDDnfiSLEPLRKAVRLNPEDPYLKVLLALKLQDLGEHVEAEAH 230
Cdd:COG5010   68 GDFEESLALLEQALQLDPNNPELYYNLALLYSRSgDKDE---AKEYYEKALALSPDNPNAYSNLAALLLSLGQDDEAKAA 144


                 ....*
gi 341940830 231 IEEAL 235
Cdd:COG5010  145 LQRAL 149
PEP_TPR_lipo TIGR02917
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ...
 152-462 8.87e-07

putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.


Pssm-ID: 274350 [Multi-domain]  Cd Length: 899  Bit Score: 51.62  E-value: 8.87e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 341940830  152 GNYKQAMACFAKALKVEPENPEYNTGYAVVAYRQ-DLDDnfiSLEPLRKAVRLNPEDPYLKVLLALKLQDLGEHVEAEAH 230
Cdd:TIGR02917 241 GEFEEAEKHADALLKKAPNSPLAHYLKALVDFQKkNYED---ARETLQDALKSAPEYLPALLLAGASEYQLGNLEQAYQY 317

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 341940830  231 IEEALSSTSCQSYVIRYAAKYFRRKHRVDKALHLLNRALQASP-------SSGYLH-----YQKGLCYKQQISQLrTSRN 298
Cdd:TIGR02917 318 LNQILKYAPNSHQARRLLASIQLRLGRVDEAIATLSPALGLDPddpaalsLLGEAYlalgdFEKAAEYLAKATEL-DPEN 396

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 341940830  299 RQPRRQDNVQELAQ----QAIHEFQETLKLRPTFEMAYVCMAEVQAEIHQYEEA---ERNFQKALNNKTLVAHIEQDIHL 371
Cdd:TIGR02917 397 AAARTQLGISKLSQgdpsEAIADLETAAQLDPELGRADLLLILSYLRSGQFDKAlaaAKKLEKKQPDNASLHNLLGAIYL 476

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 341940830  372 RygrflqfhKQSEDKAITLYLKGLKVEEKSFAWRKLLTALE----------KVAERRVCQNVHLVESTSLLGLVYKLKGQ 441
Cdd:TIGR02917 477 G--------KGDLAKAREAFEKALSIEPDFFPAAANLARIDiqegnpddaiQRFEKVLTIDPKNLRAILALAGLYLRTGN 548

                         330       340
                  ....*....|....*....|..
gi 341940830  442 EKNALFYYEKALRL-TGEMNPA 462
Cdd:TIGR02917 549 EEEAVAWLEKAAELnPQEIEPA 570
PEP_TPR_lipo TIGR02917
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ...
 150-455 1.85e-06

putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.


Pssm-ID: 274350 [Multi-domain]  Cd Length: 899  Bit Score: 50.47  E-value: 1.85e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 341940830  150 GGGNYKQAMACFAKALKVEPENPEYNTGYAVVAYRQDLDDnfISLEPLRKAVRLNPEDpyLKVLLAL-KLQDLGEHVEAE 228
Cdd:TIGR02917 477 GKGDLAKAREAFEKALSIEPDFFPAAANLARIDIQEGNPD--DAIQRFEKVLTIDPKN--LRAILALaGLYLRTGNEEEA 552

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 341940830  229 AHIEEALSSTSCQSYVIRYA-AKYFRRKHRVDKALHLLNRALQASPSSGYLHYQKGLCYKQQISQlrtsrnrqprrqdnv 307
Cdd:TIGR02917 553 VAWLEKAAELNPQEIEPALAlAQYYLGKGQLKKALAILNEAADAAPDSPEAWLMLGRAQLAAGDL--------------- 617

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 341940830  308 qelaQQAIHEFQETLKLRPTFEMAYVCMAEVQAEIHQYEEAERNFQKALNnktlvahieqdihlrygrflqfHKQSEDKA 387
Cdd:TIGR02917 618 ----NKAVSSFKKLLALQPDSALALLLLADAYAVMKNYAKAITSLKRALE----------------------LKPDNTEA 671

                         250       260       270       280       290       300
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 341940830  388 ITLYLKGLKVEEKSFAWRKLLTALEKvaerrvcQNVHLVESTSLLGLVYKLKGQEKNALFYYEKALRL 455
Cdd:TIGR02917 672 QIGLAQLLLAAKRTESAKKIAKSLQK-------QHPKAALGFELEGDLYLRQKDYPAAIQAYRKALKR 732
BepA COG4783
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ...
 58-207 3.49e-06

Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443813 [Multi-domain]  Cd Length: 139  Bit Score: 46.34  E-value: 3.49e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 341940830  58 LAYVRHLKGQQDEALQSLKEAEaliqseQLSKRSLATWGNCAWLHYHRGSLAEAQIYLDKVEKVCKEfSSPFRYRLecae 137
Cdd:COG4783   10 LAQALLLAGDYDEAEALLEKAL------ELDPDNPEAFALLGEILLQLGDLDEAIVLLHEALELDPD-EPEARLNL---- 78

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 341940830 138 mdceeGWALLKCggGNYKQAMACFAKALKVEPENPEYNTGYAVVAYRQDLDDNFISLepLRKAVRLNPED 207
Cdd:COG4783   79 -----GLALLKA--GDYDEALALLEKALKLDPEHPEAYLRLARAYRALGRPDEAIAA--LEKALELDPDD 139
NrfG COG4235
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ...
 194-289 5.68e-06

Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443378 [Multi-domain]  Cd Length: 131  Bit Score: 45.77  E-value: 5.68e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 341940830 194 LEPLRKAVRLNPEDPYLKVLLALKLQDLGEHVEAEAHIEEALSSTSCQSYVIRYAAKYFRRKHRVDKALHLLNRALQASP 273
Cdd:COG4235    3 IARLRQALAANPNDAEGWLLLGRAYLRLGRYDEALAAYEKALRLDPDNADALLDLAEALLAAGDTEEAEELLERALALDP 82

                         90
                 ....*....|....*.
gi 341940830 274 SSGYLHYQKGLCYKQQ 289
Cdd:COG4235   83 DNPEALYLLGLAAFQQ 98
NlpI COG4785
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];
152-268 1.10e-05

Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 443815 [Multi-domain]  Cd Length: 223  Bit Score: 46.45  E-value: 1.10e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 341940830 152 GNYKQAMACFAKALKVEPENPEYNTGYAVVAYRQDLDDNfiSLEPLRKAVRLNPEDPYLKVLLALKLQDLGEHVEAEAHI 231
Cdd:COG4785   87 GDYDLAIADFDQALELDPDLAEAYNNRGLAYLLLGDYDA--ALEDFDRALELDPDYAYAYLNRGIALYYLGRYELAIADL 164

                         90       100       110
                 ....*....|....*....|....*....|....*....
gi 341940830 232 EEA--LSSTSCQSYVIRYAAkyfRRKHRVDKALHLLNRA 268
Cdd:COG4785  165 EKAleLDPNDPERALWLYLA---ERKLDPEKALALLLED 200
Spy COG3914
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ...
 55-227 1.41e-05

Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443119 [Multi-domain]  Cd Length: 658  Bit Score: 47.68  E-value: 1.41e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 341940830  55 HNLLAYVRHLKGQQDEALQSLKEAEALiqseqlSKRSLATWGNCAWLHYHRGSLAEAQIYLDKVekvckefsspFRYRLE 134
Cdd:COG3914  115 LFNLGNLLLALGRLEEALAALRRALAL------NPDFAEAYLNLGEALRRLGRLEEAIAALRRA----------LELDPD 178

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 341940830 135 CAEMDCEEGWALLKCGggNYKQAMACFAKALKVEPENPEYNTGYAVVAYRQDLDDNFISLEPLRKAVRLNPEDPYLKVLL 214
Cdd:COG3914  179 NAEALNNLGNALQDLG--RLEEAIAAYRRALELDPDNADAHSNLLFALRQACDWEVYDRFEELLAALARGPSELSPFALL 256

                        170
                 ....*....|...
gi 341940830 215 ALKLQDLGEHVEA 227
Cdd:COG3914  257 YLPDDDPAELLAL 269
HemYx COG3071
Uncharacterized protein HemY, contains HemY_N domain and TPR repeats (unrelated to ...
 182-356 1.50e-05

Uncharacterized protein HemY, contains HemY_N domain and TPR repeats (unrelated to protoporphyrinogen oxidase HemY) [Function unknown];


Pssm-ID: 442305 [Multi-domain]  Cd Length: 323  Bit Score: 46.83  E-value: 1.50e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 341940830 182 AYRQDLDDNFISLEPLRKAVRLNPE----DPYLKVLLALKLQDLGEHVEAEAHIEEALSSTSCQSYVIRYAAkyfRRKHR 257
Cdd:COG3071  163 AYLGLLRQAARDAEALKALWKALPRaerrDPELAAAYARALIALGDHDEAERLLREALKRQWDPRLVRLYGR---LQGGD 239

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 341940830 258 VDKALHLLNRALQASPSSGYLHYQKG-LCYKQQisqlrtsrnrqprrqdnvqeLAQQAIHEFQETLKLRPTFEmAYVCMA 336
Cdd:COG3071  240 PAKQLKRAEKWLKKHPNDPDLLLALGrLCLRNQ--------------------LWGKAREYLEAALALRPSAE-AYAELA 298

                        170       180
                 ....*....|....*....|
gi 341940830 337 EVQAEIHQYEEAERNFQKAL 356
Cdd:COG3071  299 RLLEQLGDPEEAAEHYRKAL 318
PEP_TPR_lipo TIGR02917
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ...
 143-355 1.73e-05

putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.


Pssm-ID: 274350 [Multi-domain]  Cd Length: 899  Bit Score: 47.39  E-value: 1.73e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 341940830  143 GWALLKCGGGNYKQAMACFAKALKVEPENPEYNTGYAVVAYRQDldDNFISLEPLRKAVRLNPEDPYLKVLLALKLQDLG 222
Cdd:TIGR02917 164 GLAQLALAENRFDEARALIDEVLTADPGNVDALLLKGDLLLSLG--NIELALAAYRKAIALRPNNIAVLLALATILIEAG 241

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 341940830  223 EHVEAEAHIEEALSSTSCQSYVIRYAAKYFRRKHRVDKALHLLNRALQASPS-------SGYLHYQKG--LCYKQQISQ- 292
Cdd:TIGR02917 242 EFEEAEKHADALLKKAPNSPLAHYLKALVDFQKKNYEDARETLQDALKSAPEylpalllAGASEYQLGnlEQAYQYLNQi 321

                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 341940830  293 -LRTSRNRQPRRQDNVQELAQ----QAIHEFQETLKLRPTFEMAYVCMAEVQAEIHQYEEAERNFQKA 355
Cdd:TIGR02917 322 lKYAPNSHQARRLLASIQLRLgrvdEAIATLSPALGLDPDDPAALSLLGEAYLALGDFEKAAEYLAKA 389
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
55-271 1.77e-05

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 46.15  E-value: 1.77e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 341940830  55 HNLLAYVRHLKGQQDEALQSLKEAEALiqseqlSKRSLATWGNCAWLHYHRGSLAEAQIYLDKVEKVCKEFSSPFRYRle 134
Cdd:COG0457   45 LYNLGLAYLRLGRYEEALADYEQALEL------DPDDAEALNNLGLALQALGRYEEALEDYDKALELDPDDAEALYNL-- 116

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 341940830 135 caemdceeGWALLKCGggNYKQAMACFAKALKVEPENPEYNTGYAVVAYRQDLDDNFISLEPLRKAVRLNPEDPYLKVLL 214
Cdd:COG0457  117 --------GLALLELG--RYDEAIEAYERALELDPDDADALYNLGIALEKLGRYEEALELLEKLEAAALAALLAAALGEA 186

                        170       180       190       200       210
                 ....*....|....*....|....*....|....*....|....*....|....*..
gi 341940830 215 ALKLQDLGEHVEAEAHIEEALSSTSCQSYVIRYAAKYFRRKHRVDKALHLLNRALQA 271
Cdd:COG0457  187 ALALAAAEVLLALLLALEQALRKKLAILTLAALAELLLLALALLLALRLAALALYQY 243
PilF COG3063
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
251-356 3.60e-05

Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];


Pssm-ID: 442297 [Multi-domain]  Cd Length: 94  Bit Score: 42.46  E-value: 3.60e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 341940830 251 YFRRKHRVDKALHLLNRALQASPSSGYLHYQKGLCYKQQisqlrtsrnrqprrqdnvqELAQQAIhEFQETLKLRPTFEM 330
Cdd:COG3063    1 LYLKLGDLEEAEEYYEKALELDPDNADALNNLGLLLLEQ-------------------GRYDEAI-ALEKALKLDPNNAE 60

                         90       100
                 ....*....|....*....|....*.
gi 341940830 331 AYVCMAEVQAEIHQYEEAERNFQKAL 356
Cdd:COG3063   61 ALLNLAELLLELGDYDEALAYLERAL 86
NrfG COG4235
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ...
 260-413 1.10e-04

Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443378 [Multi-domain]  Cd Length: 131  Bit Score: 41.92  E-value: 1.10e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 341940830 260 KALHLLNRALQASPSSGYLHYQKGLCYKQQisqlrtsrnrqprrqdnvqELAQQAIHEFQETLKLRPTFEMAYVCMAEVQ 339
Cdd:COG4235    1 EAIARLRQALAANPNDAEGWLLLGRAYLRL-------------------GRYDEALAAYEKALRLDPDNADALLDLAEAL 61

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 341940830 340 AEIHQYEEAERNFQKALNnktlVAHIEQDIHLRYGRFLqFHKQSEDKAITLYLKGLKVEEKSFAWRKLLTALEK 413
Cdd:COG4235   62 LAAGDTEEAEELLERALA----LDPDNPEALYLLGLAA-FQQGDYAEAIAAWQKLLALLPADAPARLLEASIAE 130
PilF COG3063
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
197-274 2.80e-04

Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];


Pssm-ID: 442297 [Multi-domain]  Cd Length: 94  Bit Score: 39.77  E-value: 2.80e-04
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 341940830 197 LRKAVRLNPEDPYLKVLLALKLQDLGEHVEAEAhIEEALSSTSCQSYVIRYAAKYFRRKHRVDKALHLLNRALQASPS 274
Cdd:COG3063   15 YEKALELDPDNADALNNLGLLLLEQGRYDEAIA-LEKALKLDPNNAEALLNLAELLLELGDYDEALAYLERALELDPS 91
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
312-455 3.64e-04

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 41.92  E-value: 3.64e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 341940830 312 QQAIHEFQETLKLRPTFEMAYVCMAEVQAEIHQYEEAERNFQKALNNKTLVAhieqDIHLRYGRFLQFHKQSEdKAITLY 391
Cdd:COG0457   25 EEAIEDYEKALELDPDDAEALYNLGLAYLRLGRYEEALADYEQALELDPDDA----EALNNLGLALQALGRYE-EALEDY 99

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 341940830 392 LKGLKVE-EKSFAWRKLltalekvaerrvcqnvhlvestsllGLVYKLKGQEKNALFYYEKALRL 455
Cdd:COG0457  100 DKALELDpDDAEALYNL-------------------------GLALLELGRYDEAIEAYERALEL 139
TadD COG5010
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ...
 193-273 7.32e-04

Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];


Pssm-ID: 444034 [Multi-domain]  Cd Length: 155  Bit Score: 39.94  E-value: 7.32e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 341940830 193 SLEPLRKAVRLNPEDPYLKVLLALKLQDLGEHVEAEAHIEEALSSTSCQSYVIRYAAKYFRRKHRVDKALHLLNRALQAS 272
Cdd:COG5010   73 SLALLEQALQLDPNNPELYYNLALLYSRSGDKDEAKEYYEKALALSPDNPNAYSNLAALLLSLGQDDEAKAALQRALGTS 152


                 .
gi 341940830 273 P 273
Cdd:COG5010  153 P 153
BepA COG4783
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ...
 311-459 7.34e-04

Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443813 [Multi-domain]  Cd Length: 139  Bit Score: 39.79  E-value: 7.34e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 341940830 311 AQQAIHEFQETLKLRPTFEMAYVCMAEVQAEIHQYEEAERNFQKALNnktlVAHIEQDIHLRYGRFLQFHKQsEDKAITL 390
Cdd:COG4783   20 YDEAEALLEKALELDPDNPEAFALLGEILLQLGDLDEAIVLLHEALE----LDPDEPEARLNLGLALLKAGD-YDEALAL 94

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 341940830 391 YLKGLKVEEKSfawrklltalekvaerrvcqnvhlVESTSLLGLVYKLKGQEKNALFYYEKALRLTGEM 459
Cdd:COG4783   95 LEKALKLDPEH------------------------PEAYLRLARAYRALGRPDEAIAALEKALELDPDD 139
PEP_TPR_lipo TIGR02917
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ...
 25-235 9.53e-04

putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.


Pssm-ID: 274350 [Multi-domain]  Cd Length: 899  Bit Score: 41.61  E-value: 9.53e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 341940830   25 LLFENNDiPDLEVRISEQVQFLDIKNPLGmHNLLAYVRHLKGQQDEALQSLKEA--------------EALIQSEQLSK- 89
Cdd:TIGR02917 678 LLLAAKR-TESAKKIAKSLQKQHPKAALG-FELEGDLYLRQKDYPAAIQAYRKAlkrapssqnaiklhRALLASGNTAEa 755

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 341940830   90 -RSLATW----GNCAWLHYHRGSLAEAQIYLDKVEKVckefsspFRYRLECAEMDC----EEGWALLKcggGNYKQAMAC 160
Cdd:TIGR02917 756 vKTLEAWlkthPNDAVLRTALAELYLAQKDYDKAIKH-------YQTVVKKAPDNAvvlnNLAWLYLE---LKDPRALEY 825

                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 341940830  161 FAKALKVEPENPEYNTGYAVVAYRQDLDDNFISLepLRKAVRLNPEDPYLKVLLALKLQDLGEHVEAEAHIEEAL 235
Cdd:TIGR02917 826 AERALKLAPNIPAILDTLGWLLVEKGEADRALPL--LRKAVNIAPEAAAIRYHLALALLATGRKAEARKELDKLL 898
PEP_TPR_lipo TIGR02917
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ...
 50-455 1.20e-03

putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.


Pssm-ID: 274350 [Multi-domain]  Cd Length: 899  Bit Score: 41.61  E-value: 1.20e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 341940830   50 NPLGmHNLLAYVRHLKGQQDEALQSLKEAEAlIQSEQLSKRSlatwgNCAWLHYHRGSLAEAQIYLDKVEKVCKEfsspf 129
Cdd:TIGR02917 464 NASL-HNLLGAIYLGKGDLAKAREAFEKALS-IEPDFFPAAA-----NLARIDIQEGNPDDAIQRFEKVLTIDPK----- 531

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 341940830  130 ryrlecaEMDCEEGWALLKCGGGNYKQAMACFAKALKVEPENpeYNTGYAVVAYRQDLDDNFISLEPLRKAVRLNPEDPY 209
Cdd:TIGR02917 532 -------NLRAILALAGLYLRTGNEEEAVAWLEKAAELNPQE--IEPALALAQYYLGKGQLKKALAILNEAADAAPDSPE 602

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 341940830  210 LKVLLALKLQDLGEHVEAEAHIEEALSSTSCQSYVIRYAAKYFRRKHRVDKALHLLNRALQASPSSGYLHYQKGLCY--- 286
Cdd:TIGR02917 603 AWLMLGRAQLAAGDLNKAVSSFKKLLALQPDSALALLLLADAYAVMKNYAKAITSLKRALELKPDNTEAQIGLAQLLlaa 682

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 341940830  287 KQQISQLRTSRNRQPRRQDN------------VQELAQQAIHEFQETLKLRPTFEMAyVCMAEVQAEIHQYEEAERNFQK 354
Cdd:TIGR02917 683 KRTESAKKIAKSLQKQHPKAalgfelegdlylRQKDYPAAIQAYRKALKRAPSSQNA-IKLHRALLASGNTAEAVKTLEA 761

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 341940830  355 ALNNktlvaHIEqDIHLRY---GRFLQFHKqsEDKAITLYLKGLKVEEK------SFAW----RKLLTALEkVAERRVCQ 421
Cdd:TIGR02917 762 WLKT-----HPN-DAVLRTalaELYLAQKD--YDKAIKHYQTVVKKAPDnavvlnNLAWlyleLKDPRALE-YAERALKL 832

                         410       420       430
                  ....*....|....*....|....*....|....*.
gi 341940830  422 --NVHLVESTslLGLVYKLKGQEKNALFYYEKALRL 455
Cdd:TIGR02917 833 apNIPAILDT--LGWLLVEKGEADRALPLLRKAVNI 866
TadD COG5010
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ...
 197-361 1.90e-03

Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];


Pssm-ID: 444034 [Multi-domain]  Cd Length: 155  Bit Score: 38.79  E-value: 1.90e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 341940830 197 LRKAVRLNPEDPYLKVLLALKLQDLGEHVEAEAHIEEALSSTSCQSYVIRYAAKYFRRKHRVDKALHLLNRALQASPSSG 276
Cdd:COG5010    9 RLPLYLLLLTKLRTLVEKYEAALAGANNTKEDELAAAGRDKLAKAFAIESPSDNLYNKLGDFEESLALLEQALQLDPNNP 88

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 341940830 277 YLHYQKGLCYKQqisqlrtsrnrqprrqdnvQELAQQAIHEFQETLKLRPTFEMAYVCMAEVQAEIHQYEEAERNFQKAL 356
Cdd:COG5010   89 ELYYNLALLYSR-------------------SGDKDEAKEYYEKALALSPDNPNAYSNLAALLLSLGQDDEAKAALQRAL 149


                 ....*
gi 341940830 357 NNKTL 361
Cdd:COG5010  150 GTSPL 154
PRK11447 PRK11447
cellulose synthase subunit BcsC; Provisional
 207-356 2.74e-03

cellulose synthase subunit BcsC; Provisional


Pssm-ID: 183140 [Multi-domain]  Cd Length: 1157  Bit Score: 40.45  E-value: 2.74e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 341940830  207 DP-YLKVLLALKLQDLGEHVEAEAHIEEALSSTSCQSYVI-RYAAKYFRRKHRvDKALHLLNRALQASPSSgylhYQKGl 284
Cdd:PRK11447  267 DPaFRARAQGLAAVDSGQGGKAIPELQQAVRANPKDSEALgALGQAYSQQGDR-ARAVAQFEKALALDPHS----SNRD- 340

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 341940830  285 cyKQQiSQLRTSR----NRQPRRQDNVQELAQqAIHEFQETLKLRPTFEMAYVCMAEVQAEIHQYEEAERNFQKAL 356
Cdd:PRK11447  341 --KWE-SLLKVNRywllIQQGDAALKANNLAQ-AERLYQQARQVDNTDSYAVLGLGDVAMARKDYAAAERYYQQAL 412
HemYx COG3071
Uncharacterized protein HemY, contains HemY_N domain and TPR repeats (unrelated to ...
 145-456 4.79e-03

Uncharacterized protein HemY, contains HemY_N domain and TPR repeats (unrelated to protoporphyrinogen oxidase HemY) [Function unknown];


Pssm-ID: 442305 [Multi-domain]  Cd Length: 323  Bit Score: 39.12  E-value: 4.79e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 341940830 145 ALLKCGGGNYKQAMACFAKALKvepenpeyNTGYAVVAY------RQDLDDNFISLEPLRKAVRLNPEDPYLKVLLALKL 218
Cdd:COG3071   23 GLLALAEGRYARAEKLLSKAAE--------HSEAPLLAYllaaraAQALGDYERRDEYLAQALELAPEAELAVLLTRAEL 94

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 341940830 219 Q-DLGEHVEAEAHIEEALSSTSCQSYVIRYAAKYFRRKHRVDKALHLLNRALQASPSSgylhyqkglcyKQQISQLRtsr 297
Cdd:COG3071   95 LlDQGQAEQALATLEALRAGAPRHPQVLRLLLQAYRQLGDWEELLELLPALRKHKALS-----------AEEAQALE--- 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 341940830 298 nrqprrQDNVQELAQQAIHEFQETL--------KLRPTFEMAyVCMAEVQAEIHQYEEAERNFQKALN---NKTLVAHIE 366
Cdd:COG3071  161 ------RRAYLGLLRQAARDAEALKalwkalprAERRDPELA-AAYARALIALGDHDEAERLLREALKrqwDPRLVRLYG 233

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 341940830 367 Q----DIHLRYGRFLQFHKQSEDKAITLYLKG-LKVEEKsfAWRKLLTALEKVAERRVCQNVHLvestsLLGLVYKLKGQ 441
Cdd:COG3071  234 RlqggDPAKQLKRAEKWLKKHPNDPDLLLALGrLCLRNQ--LWGKAREYLEAALALRPSAEAYA-----ELARLLEQLGD 306

                        330
                 ....*....|....*
gi 341940830 442 EKNALFYYEKALRLT 456
Cdd:COG3071  307 PEEAAEHYRKALALA 321
PRK09782 PRK09782
bacteriophage N4 receptor, outer membrane subunit; Provisional
 152-256 5.83e-03

bacteriophage N4 receptor, outer membrane subunit; Provisional


Pssm-ID: 236624 [Multi-domain]  Cd Length: 987  Bit Score: 39.13  E-value: 5.83e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 341940830 152 GNYKQAMACFAKALKVEPENPEYNTGYavvAYR-QDLDDNFISLEPLRKAVRLNPEDPYLKVLLALKLQDLGEHVEAEAH 230
Cdd:PRK09782 623 HNVPAAVSDLRAALELEPNNSNYQAAL---GYAlWDSGDIAQSREMLERAHKGLPDDPALIRQLAYVNQRLDDMAATQHY 699

                         90       100       110
                 ....*....|....*....|....*....|..
gi 341940830 231 IEEALSSTSCQS-----YVIRYAAKY-FRRKH 256
Cdd:PRK09782 700 ARLVIDDIDNQAlitplTPEQNQQRFnFRRLH 731
NrfG COG4235
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ...
 313-455 9.28e-03

Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443378 [Multi-domain]  Cd Length: 131  Bit Score: 36.52  E-value: 9.28e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 341940830 313 QAIHEFQETLKLRPTFEMAYVCMAEVQAEIHQYEEAERNFQKALNNKTLVAhieqDIHLRYGRFLQFHKQSEdKAITLYL 392
Cdd:COG4235    1 EAIARLRQALAANPNDAEGWLLLGRAYLRLGRYDEALAAYEKALRLDPDNA----DALLDLAEALLAAGDTE-EAEELLE 75

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 341940830 393 KGLKVEEKSfawrklltalekvaerrvcqnvhlVESTSLLGLVYKLKGQEKNALFYYEKALRL 455
Cdd:COG4235   76 RALALDPDN------------------------PEALYLLGLAAFQQGDYAEAIAAWQKLLAL 114
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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