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Conserved domains on  [gi|34106700|gb|AAQ62351|]
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NADH dehydrogenase subunit 6, partial (mitochondrion) [Vidua fischeri]

Protein Classification

NADH dehydrogenase subunit 6( domain architecture ID 10009572)

NADH dehydrogenase subunit 6 is the core subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I) that functions in the transfer of electrons from NADH to the respiratory chain

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
ND6 MTH00115
NADH dehydrogenase subunit 6; Provisional
 1-159 3.13e-34

NADH dehydrogenase subunit 6; Provisional


:

Pssm-ID: 214424  Cd Length: 174  Bit Score: 117.93  E-value: 3.13e-34
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 34106700    1 MMEFVLFLGLFFALGGLAVASNPSPYYGVVGLVVAAIAGGGWLVSLGVSFVSLMLVMVYLGGMLVVFVYSVSLAADPYPE 80
Cdd:MTH00115   1 MMYFVFLLGVCFVLGVVGVASNPSPYYGVVSLVLASVFGCGVLVSLGGSFVSLVLFLVYLGGMLVVFAYSVSLAADPYPE 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 34106700   81 TWTDWGVVGYGFGMGLVVMVGLIVSGVF--GLLTDVVTVNGAGLLSVRVDFSGAAVLYSEGAGFLLIGGWGLLLTLFVVL 158
Cdd:MTH00115  81 AWGDWGVVGYVVGFVLVVVVVGVVVGGLwgMEGVGVVTVDSGGLFVVRLDFSGVSLFYSSGGGGLLVCGWGLLLTLFVVL 160


                 .
gi 34106700  159 E 159
Cdd:MTH00115 161 E 161
 
Name Accession Description Interval E-value
ND6 MTH00115
NADH dehydrogenase subunit 6; Provisional
 1-159 3.13e-34

NADH dehydrogenase subunit 6; Provisional


Pssm-ID: 214424  Cd Length: 174  Bit Score: 117.93  E-value: 3.13e-34
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 34106700    1 MMEFVLFLGLFFALGGLAVASNPSPYYGVVGLVVAAIAGGGWLVSLGVSFVSLMLVMVYLGGMLVVFVYSVSLAADPYPE 80
Cdd:MTH00115   1 MMYFVFLLGVCFVLGVVGVASNPSPYYGVVSLVLASVFGCGVLVSLGGSFVSLVLFLVYLGGMLVVFAYSVSLAADPYPE 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 34106700   81 TWTDWGVVGYGFGMGLVVMVGLIVSGVF--GLLTDVVTVNGAGLLSVRVDFSGAAVLYSEGAGFLLIGGWGLLLTLFVVL 158
Cdd:MTH00115  81 AWGDWGVVGYVVGFVLVVVVVGVVVGGLwgMEGVGVVTVDSGGLFVVRLDFSGVSLFYSSGGGGLLVCGWGLLLTLFVVL 160


                 .
gi 34106700  159 E 159
Cdd:MTH00115 161 E 161
Oxidored_q3 pfam00499
NADH-ubiquinone/plastoquinone oxidoreductase chain 6;
17-127 1.87e-08

NADH-ubiquinone/plastoquinone oxidoreductase chain 6;


Pssm-ID: 459832 [Multi-domain]  Cd Length: 141  Bit Score: 50.19  E-value: 1.87e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 34106700    17 LAVASNPSPYYGVVGLVVAAIAGGGWLVSLGVSFVSLMLVMVYLGGMLVVFVYSVSLAADPYPETWTDWGVVGYGFGMGL 96
Cdd:pfam00499   1 LGVVTSRNPVHSALFLVLTFFGVAGLYLLLGAEFLAAVQVLVYVGAIMVLFLFVIMLLLAEEEPEKLRSGLPLAALLLGL 80

                          90       100       110
                  ....*....|....*....|....*....|.
gi 34106700    97 VVMVGLIVSGVFGLLTDVVTVNGAGLLSVRV 127
Cdd:pfam00499  81 LLLALLLLVLLSASLTPAAAAAAPDVGNIEA 111
 
Name Accession Description Interval E-value
ND6 MTH00115
NADH dehydrogenase subunit 6; Provisional
 1-159 3.13e-34

NADH dehydrogenase subunit 6; Provisional


Pssm-ID: 214424  Cd Length: 174  Bit Score: 117.93  E-value: 3.13e-34
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 34106700    1 MMEFVLFLGLFFALGGLAVASNPSPYYGVVGLVVAAIAGGGWLVSLGVSFVSLMLVMVYLGGMLVVFVYSVSLAADPYPE 80
Cdd:MTH00115   1 MMYFVFLLGVCFVLGVVGVASNPSPYYGVVSLVLASVFGCGVLVSLGGSFVSLVLFLVYLGGMLVVFAYSVSLAADPYPE 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 34106700   81 TWTDWGVVGYGFGMGLVVMVGLIVSGVF--GLLTDVVTVNGAGLLSVRVDFSGAAVLYSEGAGFLLIGGWGLLLTLFVVL 158
Cdd:MTH00115  81 AWGDWGVVGYVVGFVLVVVVVGVVVGGLwgMEGVGVVTVDSGGLFVVRLDFSGVSLFYSSGGGGLLVCGWGLLLTLFVVL 160


                 .
gi 34106700  159 E 159
Cdd:MTH00115 161 E 161
ND6 MTH00138
NADH dehydrogenase subunit 6; Provisional
 1-159 6.29e-31

NADH dehydrogenase subunit 6; Provisional


Pssm-ID: 177196  Cd Length: 173  Bit Score: 109.46  E-value: 6.29e-31
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 34106700    1 MMEFVLFLGLFFALGGLAVASNPSPYYGVVGLVVAAIAGGGWLVSLGVSFVSLMLVMVYLGGMLVVFVYSVSLAADPYPE 80
Cdd:MTH00138   1 MTYLMSLFLLGLVLGLVAVASNPSPYFAALGLVVVAGVGCGVLVGHGGSFLSLVLFLIYLGGMLVVFAYSAALAAEPYPE 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 34106700   81 TWTDWGVVGYGFG-MGLVVMVGLIVSGVFGLLTDVVTVNGAGLLSVRVDFSGAAVLYSEGAGFLLIGGWGLLLTLFVVLE 159
Cdd:MTH00138  81 SWGSWSVLGYVVGyLVGVVLAAGLFWGGWYEGSWVVVDELKEFSVLRGDVGGVALMYSSGGGMLVICAWVLLLTLFVVLE 160
ND6 MTH00065
NADH dehydrogenase subunit 6; Provisional
 2-159 4.07e-30

NADH dehydrogenase subunit 6; Provisional


Pssm-ID: 214415  Cd Length: 172  Bit Score: 107.24  E-value: 4.07e-30
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 34106700    2 MEFVLFLGLF-FALGGLAVASNPSPYYGVVGLVVAAIAGGGWLVSLGVSFVSLMLVMVYLGGMLVVFVYSVSLAADPYPE 80
Cdd:MTH00065   1 MMYLGFLGMLgLVVGLVAVASNPSPYFAALGLVLGAVCGCLVLVELGVSFLSLVLFLIYLGGMLVVFAYSAALAAEPYPE 80

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 34106700   81 TWTDWGVVGYGFGMGLVVMVGLIVSGVFGLLTDVVTVNGAGLLSVRVDFSGAAVLYSEGAGFLLIGGWGLLLTLFVVLE 159
Cdd:MTH00065  81 AWGSWSVLVYVLFYLLLLIVGYILFGCNFSLEFLFTNYDTEFSVVGYDWGGVGLMYSSGGWFLMISGWVLLLTLFVVLE 159
ND6 MTH00109
NADH dehydrogenase subunit 6; Provisional
 1-159 1.28e-18

NADH dehydrogenase subunit 6; Provisional


Pssm-ID: 214421  Cd Length: 175  Bit Score: 77.92  E-value: 1.28e-18
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 34106700    1 MMEFVLFLGLFFALGGLAVASNPSPYYGVVGLVVAAIAGGGWLVSLGVSFVSLMLVMVYLGGMLVVFVYSVSLAADPYPE 80
Cdd:MTH00109   2 MMYIVFILSVLFVLGFVGFSSKPSPIYGGLGLIVSGGVGCGIVLSFGGSFLGLMVFLIYLGGMLVVFGYTTAMATEEYPE 81

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 34106700   81 TWTDWGVVGYGFGMGLVVMVGLI----------VSGVFGLLTDVVTVNGAGLLSVRVDFSGAAVLYSEGAGFLLIGGWGL 150
Cdd:MTH00109  82 TWVSNKVVLGALLLGLLMELLLVlyvlkddeveVVFNFNGLGDWVIYDTGGSGFFSEDAMGVAALYSYGTWLVVVTGWSL 161


                 ....*....
gi 34106700  151 LLTLFVVLE 159
Cdd:MTH00109 162 FIGVFVIIE 170
ND6 MTH00214
NADH dehydrogenase subunit 6; Provisional
 1-159 6.27e-15

NADH dehydrogenase subunit 6; Provisional


Pssm-ID: 214461  Cd Length: 168  Bit Score: 68.09  E-value: 6.27e-15
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 34106700    1 MMEFVLFLGLFFALGGLAVASNPSPYYGVVGLVVAAIAGGGWLVSLGVSFVSLMLVMVYLGGMLVVFVYSVSLAADPYPE 80
Cdd:MTH00214   1 MLYFVFLLMFGFLLGLMMVASSPSPYFGALGLVLLALLGCFLLLSHGNSFLGLILFLIYLGGMLVVFSYSAALAADPYPE 80

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 34106700   81 TWTDWGVVGYgfgmGLVVMVGLIVSGVFGLLTDVVTVNGAGLLSVRVDFSGAAVLYSEGAGFLLIGGWGLLLTLFVVLE 159
Cdd:MTH00214  81 SWGGWSVLLF----FLFYLLGLGFVGFYFYGGWEMLSWMGVDEANNLDLSGVSDLYSRGFFLLLLGGVVLFLVLFVVLE 155
ND6 MTH00045
NADH dehydrogenase subunit 6; Validated
 2-79 3.81e-10

NADH dehydrogenase subunit 6; Validated


Pssm-ID: 177120  Cd Length: 162  Bit Score: 55.30  E-value: 3.81e-10
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 34106700    2 MEFVLFLgLFFALGGLAVASNPSPYYGVVGLVVAAIAGGGWLVSLGVSFVSLMLVMVYLGGMLVVFVYSVSLAADPYP 79
Cdd:MTH00045   1 MVFYLFL-ILMLFGSTLVFYSLSPYYSALGLVLVSLSGCLLLSLLGLSFLALLLLLIYMGGMLVVFVYSSALSAERYP 77
Oxidored_q3 pfam00499
NADH-ubiquinone/plastoquinone oxidoreductase chain 6;
17-127 1.87e-08

NADH-ubiquinone/plastoquinone oxidoreductase chain 6;


Pssm-ID: 459832 [Multi-domain]  Cd Length: 141  Bit Score: 50.19  E-value: 1.87e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 34106700    17 LAVASNPSPYYGVVGLVVAAIAGGGWLVSLGVSFVSLMLVMVYLGGMLVVFVYSVSLAADPYPETWTDWGVVGYGFGMGL 96
Cdd:pfam00499   1 LGVVTSRNPVHSALFLVLTFFGVAGLYLLLGAEFLAAVQVLVYVGAIMVLFLFVIMLLLAEEEPEKLRSGLPLAALLLGL 80

                          90       100       110
                  ....*....|....*....|....*....|.
gi 34106700    97 VVMVGLIVSGVFGLLTDVVTVNGAGLLSVRV 127
Cdd:pfam00499  81 LLLALLLLVLLSASLTPAAAAAAPDVGNIEA 111
ND6 MTH00021
NADH dehydrogenase subunit 6; Validated
 7-73 1.79e-04

NADH dehydrogenase subunit 6; Validated


Pssm-ID: 214401 [Multi-domain]  Cd Length: 188  Bit Score: 40.10  E-value: 1.79e-04
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 34106700    7 FLGLFFALGGLAVASNPSPYYGVVGLVVAAIAGGGWLVSLGVSFVSLMLVMVYLGGMLVVFVYSVSL 73
Cdd:MTH00021   1 FFSLGIIGSGIMVISALNPVHSIFWLVVVFVNSAVFFILLGLDFLALMFLIIYVGAIAILFLFVIML 67
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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