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Conserved domains on  [gi|340516556|gb|EGR46804|]
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predicted protein [Trichoderma reesei QM6a]

Protein Classification

WD40 repeat domain-containing protein( domain architecture ID 11455410)

WD40 repeat domain-containing protein similar to proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly

CATH:  2.130.10.10
PubMed:  10322433|8090199
SCOP:  4002744

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
WD40 COG2319
WD40 repeat [General function prediction only];
148-241 2.55e-12

WD40 repeat [General function prediction only];


:

Pssm-ID: 441893 [Multi-domain]  Cd Length: 403  Bit Score: 67.63  E-value: 2.55e-12
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 340516556 148 GQIQIVDLGTGN-VSIIPAHSSALRAIQLSADGELLASASETGTlIRVYSTSNCARLAELRRGIDPatIFSLAFSPSGSL 226
Cdd:COG2319  226 GTVRLWDLATGKlLRTLTGHSGSVRSVAFSPDGRLLASGSADGT-VRLWDLATGELLRTLTGHSGG--VNSVAFSPDGKL 302

                         90
                 ....*....|....*
gi 340516556 227 LACTSDKATLHIFDV 241
Cdd:COG2319  303 LASGSDDGTVRLWDL 317
 
Name Accession Description Interval E-value
WD40 COG2319
WD40 repeat [General function prediction only];
148-241 2.55e-12

WD40 repeat [General function prediction only];


Pssm-ID: 441893 [Multi-domain]  Cd Length: 403  Bit Score: 67.63  E-value: 2.55e-12
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 340516556 148 GQIQIVDLGTGN-VSIIPAHSSALRAIQLSADGELLASASETGTlIRVYSTSNCARLAELRRGIDPatIFSLAFSPSGSL 226
Cdd:COG2319  226 GTVRLWDLATGKlLRTLTGHSGSVRSVAFSPDGRLLASGSADGT-VRLWDLATGELLRTLTGHSGG--VNSVAFSPDGKL 302

                         90
                 ....*....|....*
gi 340516556 227 LACTSDKATLHIFDV 241
Cdd:COG2319  303 LASGSDDGTVRLWDL 317
WD40 cd00200
WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions ...
 148-243 4.56e-10

WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment.


Pssm-ID: 238121 [Multi-domain]  Cd Length: 289  Bit Score: 60.04  E-value: 4.56e-10
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 340516556 148 GQIQIVDLGTGNVSI-IPAHSSALRAIQLSADGELLASASETGTlIRVYSTSNCARLAELRRgiDPATIFSLAFSPSGSL 226
Cdd:cd00200   31 GTIKVWDLETGELLRtLKGHTGPVRDVAASADGTYLASGSSDKT-IRLWDLETGECVRTLTG--HTSYVSSVAFSPDGRI 107

                         90
                 ....*....|....*..
gi 340516556 227 LACTSDKATLHIFDVPQ 243
Cdd:cd00200  108 LSSSSRDKTIKVWDVET 124
WD40 smart00320
WD40 repeats; Note that these repeats are permuted with respect to the structural repeats ...
 160-196 3.34e-03

WD40 repeats; Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.


Pssm-ID: 197651 [Multi-domain]  Cd Length: 40  Bit Score: 34.98  E-value: 3.34e-03
                           10        20        30
                   ....*....|....*....|....*....|....*..
gi 340516556   160 VSIIPAHSSALRAIQLSADGELLASASETGTlIRVYS 196
Cdd:smart00320   5 LKTLKGHTGPVTSVAFSPDGKYLASGSDDGT-IKLWD 40
PQQ_ABC_repeats TIGR03866
PQQ-dependent catabolism-associated beta-propeller protein; Members of this protein family ...
 150-240 4.48e-03

PQQ-dependent catabolism-associated beta-propeller protein; Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.


Pssm-ID: 274824 [Multi-domain]  Cd Length: 310  Bit Score: 38.48  E-value: 4.48e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 340516556  150 IQIVDLGTGNVsiipAHSsaLRA------IQLSADGELLASASETGTLIRVYSTSNCARLAELRRGIDPAtifSLAFSPS 223
Cdd:TIGR03866  65 IQVIDPATGEV----LHT--LPSgpdpeqFALHPNGKILYIANEDDALVTVIDIETRKVLAQIDVGVEPE---GMAVSPD 135

                          90       100
                  ....*....|....*....|....*.
gi 340516556  224 GSLLACTS---------DKATLHIFD 240
Cdd:TIGR03866 136 GKIVVNTSettnmahwiDTATYEIVD 161
 
Name Accession Description Interval E-value
WD40 COG2319
WD40 repeat [General function prediction only];
148-241 2.55e-12

WD40 repeat [General function prediction only];


Pssm-ID: 441893 [Multi-domain]  Cd Length: 403  Bit Score: 67.63  E-value: 2.55e-12
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 340516556 148 GQIQIVDLGTGN-VSIIPAHSSALRAIQLSADGELLASASETGTlIRVYSTSNCARLAELRRGIDPatIFSLAFSPSGSL 226
Cdd:COG2319  226 GTVRLWDLATGKlLRTLTGHSGSVRSVAFSPDGRLLASGSADGT-VRLWDLATGELLRTLTGHSGG--VNSVAFSPDGKL 302

                         90
                 ....*....|....*
gi 340516556 227 LACTSDKATLHIFDV 241
Cdd:COG2319  303 LASGSDDGTVRLWDL 317
WD40 COG2319
WD40 repeat [General function prediction only];
148-241 4.77e-12

WD40 repeat [General function prediction only];


Pssm-ID: 441893 [Multi-domain]  Cd Length: 403  Bit Score: 66.86  E-value: 4.77e-12
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 340516556 148 GQIQIVDLGTGN-VSIIPAHSSALRAIQLSADGELLASASETGTlIRVYSTSNCARLAELRRgiDPATIFSLAFSPSGSL 226
Cdd:COG2319  142 GTVRLWDLATGKlLRTLTGHSGAVTSVAFSPDGKLLASGSDDGT-VRLWDLATGKLLRTLTG--HTGAVRSVAFSPDGKL 218

                         90
                 ....*....|....*
gi 340516556 227 LACTSDKATLHIFDV 241
Cdd:COG2319  219 LASGSADGTVRLWDL 233
WD40 COG2319
WD40 repeat [General function prediction only];
148-242 2.54e-11

WD40 repeat [General function prediction only];


Pssm-ID: 441893 [Multi-domain]  Cd Length: 403  Bit Score: 64.55  E-value: 2.54e-11
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 340516556 148 GQIQIVDLGTGN-VSIIPAHSSALRAIQLSADGELLASASETGTlIRVYSTSNCARLAELRRGIDPatIFSLAFSPSGSL 226
Cdd:COG2319  310 GTVRLWDLATGKlLRTLTGHTGAVRSVAFSPDGKTLASGSDDGT-VRLWDLATGELLRTLTGHTGA--VTSVAFSPDGRT 386

                         90
                 ....*....|....*.
gi 340516556 227 LACTSDKATLHIFDVP 242
Cdd:COG2319  387 LASGSADGTVRLWDLA 402
WD40 cd00200
WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions ...
 148-243 4.56e-10

WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment.


Pssm-ID: 238121 [Multi-domain]  Cd Length: 289  Bit Score: 60.04  E-value: 4.56e-10
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 340516556 148 GQIQIVDLGTGNVSI-IPAHSSALRAIQLSADGELLASASETGTlIRVYSTSNCARLAELRRgiDPATIFSLAFSPSGSL 226
Cdd:cd00200   31 GTIKVWDLETGELLRtLKGHTGPVRDVAASADGTYLASGSSDKT-IRLWDLETGECVRTLTG--HTSYVSSVAFSPDGRI 107

                         90
                 ....*....|....*..
gi 340516556 227 LACTSDKATLHIFDVPQ 243
Cdd:cd00200  108 LSSSSRDKTIKVWDVET 124
WD40 COG2319
WD40 repeat [General function prediction only];
125-241 3.80e-08

WD40 repeat [General function prediction only];


Pssm-ID: 441893 [Multi-domain]  Cd Length: 403  Bit Score: 54.53  E-value: 3.80e-08
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 340516556 125 TADNLLGLCSLSEKKLAFPGRTTGQIQIVDLGTGNVSIIPAHSSALRAIQLSADGELLASASETGTlIRVYSTSNCARLA 204
Cdd:COG2319   36 AAAVASLAASPDGARLAAGAGDLTLLLLDAAAGALLATLLGHTAAVLSVAFSPDGRLLASASADGT-VRLWDLATGLLLR 114

                         90       100       110
                 ....*....|....*....|....*....|....*..
gi 340516556 205 ELRRGIDPatIFSLAFSPSGSLLACTSDKATLHIFDV 241
Cdd:COG2319  115 TLTGHTGA--VRSVAFSPDGKTLASGSADGTVRLWDL 149
WD40 cd00200
WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions ...
 148-241 7.77e-08

WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment.


Pssm-ID: 238121 [Multi-domain]  Cd Length: 289  Bit Score: 53.11  E-value: 7.77e-08
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 340516556 148 GQIQIVDLGTGN-VSIIPAHSSALRAIQLSADGELLASASETGTlIRVYSTSNCARLAELRRgiDPATIFSLAFSPSGSL 226
Cdd:cd00200  157 GTIKLWDLRTGKcVATLTGHTGEVNSVAFSPDGEKLLSSSSDGT-IKLWDLSTGKCLGTLRG--HENGVNSVAFSPDGYL 233

                         90
                 ....*....|....*
gi 340516556 227 LACTSDKATLHIFDV 241
Cdd:cd00200  234 LASGSEDGTIRVWDL 248
WD40 cd00200
WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions ...
 148-240 1.07e-07

WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment.


Pssm-ID: 238121 [Multi-domain]  Cd Length: 289  Bit Score: 52.72  E-value: 1.07e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 340516556 148 GQIQIVDLGTG-NVSIIPAHSSALRAIQLSADGELLASASETGTlIRVYSTSNCARLAELRRGidPATIFSLAFSPSGSL 226
Cdd:cd00200  199 GTIKLWDLSTGkCLGTLRGHENGVNSVAFSPDGYLLASGSEDGT-IRVWDLRTGECVQTLSGH--TNSVTSLAWSPDGKR 275

                         90
                 ....*....|....
gi 340516556 227 LACTSDKATLHIFD 240
Cdd:cd00200  276 LASGSADGTIRIWD 289
WD40 cd00200
WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions ...
 148-241 4.83e-07

WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment.


Pssm-ID: 238121 [Multi-domain]  Cd Length: 289  Bit Score: 50.80  E-value: 4.83e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 340516556 148 GQIQIVDLGTGN-VSIIPAHSSALRAIQLSADGELLASASETGTlIRVYSTSNCARLAELRrGIDpATIFSLAFSPSGSL 226
Cdd:cd00200   73 KTIRLWDLETGEcVRTLTGHTSYVSSVAFSPDGRILSSSSRDKT-IKVWDVETGKCLTTLR-GHT-DWVNSVAFSPDGTF 149

                         90
                 ....*....|....*
gi 340516556 227 LACTSDKATLHIFDV 241
Cdd:cd00200  150 VASSSQDGTIKLWDL 164
WD40 cd00200
WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions ...
 159-246 2.19e-05

WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment.


Pssm-ID: 238121 [Multi-domain]  Cd Length: 289  Bit Score: 45.79  E-value: 2.19e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 340516556 159 NVSIIPAHSSALRAIQLSADGELLASASETGTlIRVYSTSNCARLAELRRGIDPatIFSLAFSPSGSLLACTSDKATLHI 238
Cdd:cd00200    1 LRRTLKGHTGGVTCVAFSPDGKLLATGSGDGT-IKVWDLETGELLRTLKGHTGP--VRDVAASADGTYLASGSSDKTIRL 77


                 ....*...
gi 340516556 239 FDVPQPSK 246
Cdd:cd00200   78 WDLETGEC 85
TolB COG0823
Periplasmic component TolB of the Tol biopolymer transport system [Intracellular trafficking, ...
 138-242 3.24e-04

Periplasmic component TolB of the Tol biopolymer transport system [Intracellular trafficking, secretion, and vesicular transport];


Pssm-ID: 440585 [Multi-domain]  Cd Length: 158  Bit Score: 40.81  E-value: 3.24e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 340516556 138 KKLAFPGRTTG--QIQIVDLGTGNVSIIPAHSSALRAIQLSADGELLASASETGTLIRVY----STSNCARLAElrrgid 211
Cdd:COG0823   43 RRIAFTSDRGGgpQIYVVDADGGEPRRLTFGGGYNASPSWSPDGKRLAFVSRSDGRFDIYvldlDGGAPRRLTD------ 116

                         90       100       110
                 ....*....|....*....|....*....|....
gi 340516556 212 paTIFSLAFSPSGSLLACTSD---KATLHIFDVP 242
Cdd:COG0823  117 --GPGSPSWSPDGRRIVFSSDrggRPDLYVVDLD 148
WD40 smart00320
WD40 repeats; Note that these repeats are permuted with respect to the structural repeats ...
 160-196 3.34e-03

WD40 repeats; Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.


Pssm-ID: 197651 [Multi-domain]  Cd Length: 40  Bit Score: 34.98  E-value: 3.34e-03
                           10        20        30
                   ....*....|....*....|....*....|....*..
gi 340516556   160 VSIIPAHSSALRAIQLSADGELLASASETGTlIRVYS 196
Cdd:smart00320   5 LKTLKGHTGPVTSVAFSPDGKYLASGSDDGT-IKLWD 40
WD40 COG2319
WD40 repeat [General function prediction only];
148-199 3.40e-03

WD40 repeat [General function prediction only];


Pssm-ID: 441893 [Multi-domain]  Cd Length: 403  Bit Score: 39.12  E-value: 3.40e-03
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|...
gi 340516556 148 GQIQIVDLGTGN-VSIIPAHSSALRAIQLSADGELLASASETGTlIRVYSTSN 199
Cdd:COG2319  352 GTVRLWDLATGElLRTLTGHTGAVTSVAFSPDGRTLASGSADGT-VRLWDLAT 403
PQQ_ABC_repeats TIGR03866
PQQ-dependent catabolism-associated beta-propeller protein; Members of this protein family ...
 150-240 4.48e-03

PQQ-dependent catabolism-associated beta-propeller protein; Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.


Pssm-ID: 274824 [Multi-domain]  Cd Length: 310  Bit Score: 38.48  E-value: 4.48e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 340516556  150 IQIVDLGTGNVsiipAHSsaLRA------IQLSADGELLASASETGTLIRVYSTSNCARLAELRRGIDPAtifSLAFSPS 223
Cdd:TIGR03866  65 IQVIDPATGEV----LHT--LPSgpdpeqFALHPNGKILYIANEDDALVTVIDIETRKVLAQIDVGVEPE---GMAVSPD 135

                          90       100
                  ....*....|....*....|....*.
gi 340516556  224 GSLLACTS---------DKATLHIFD 240
Cdd:TIGR03866 136 GKIVVNTSettnmahwiDTATYEIVD 161
TolB COG0823
Periplasmic component TolB of the Tol biopolymer transport system [Intracellular trafficking, ...
 140-239 6.79e-03

Periplasmic component TolB of the Tol biopolymer transport system [Intracellular trafficking, secretion, and vesicular transport];


Pssm-ID: 440585 [Multi-domain]  Cd Length: 158  Bit Score: 36.96  E-value: 6.79e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 340516556 140 LAFPGRTTGQIQI--VDLGTGNVSIIPAHSSALRAIQLSADGELLASASETGTLIRVY----STSNCARLAElrrgiDPA 213
Cdd:COG0823    1 LAFTLSRDGNSDIyvVDLDGGEPRRLTNSPGIDTSPAWSPDGRRIAFTSDRGGGPQIYvvdaDGGEPRRLTF-----GGG 75

                         90       100
                 ....*....|....*....|....*..
gi 340516556 214 TIFSLAFSPSGSLLACTSDKA-TLHIF 239
Cdd:COG0823   76 YNASPSWSPDGKRLAFVSRSDgRFDIY 102
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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