|
Name |
Accession |
Description |
Interval |
E-value |
| CYTB |
MTH00119 |
cytochrome b; Provisional |
1-170 |
1.27e-129 |
|
cytochrome b; Provisional
Pssm-ID: 214425 [Multi-domain] Cd Length: 380 Bit Score: 368.07 E-value: 1.27e-129
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 337734001 1 MAPNLRKHHPLLKMVNNSLIDLPTPSNISAWWNFGSLLGICLATQILTGLLLAAHYTADTSLAFSSVANMCRNVQYGWLI 80
Cdd:MTH00119 1 MAPNLRKSHPLLKIINNSLIDLPTPSNISAWWNFGSLLGLCLITQILTGLFLAMHYTADISLAFSSVAHICRDVQYGWLI 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 337734001 81 RNLHANGASFFFICVYLHIARGFYYGSYLYKETWNTGIILLLTLMATAFVGYVLPWGQMSFWGATVITNLFSAIPYIGHT 160
Cdd:MTH00119 81 RNLHANGASMFFICIYLHIGRGLYYGSYLYKETWNTGVILLLLLMATAFVGYVLPWGQMSFWGATVITNLLSAIPYIGQT 160
|
170
....*....|
gi 337734001 161 LVEWAWGGFS 170
Cdd:MTH00119 161 LVEWIWGGFS 170
|
|
| Cytochrome_b_N |
cd00284 |
Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit ... |
10-170 |
2.33e-76 |
|
Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit mitochondrial respiratory enzyme. Cytochrome b spans the mitochondrial membrane with 8 transmembrane helices (A-H) in eukaryotes. In plants and cyanobacteria, cytochrome b6 is analogous to eukaryote cytochrome b, containing two chains: helices A-D are encoded by the petB gene and helices E-H are encoded by the petD gene in these organisms. Cytochrome b/b6 contains two bound hemes and two ubiquinol/ubiquinone binding sites. The C-terminal portion of cytochrome b is described in a separate CD.
Pssm-ID: 238176 Cd Length: 200 Bit Score: 226.48 E-value: 2.33e-76
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 337734001 10 PLLKMVNNSLIDLPTPSNISAWWNFGSLLGICLATQILTGLLLAAHYTADTSLAFSSVANMCRNVQYGWLIRNLHANGAS 89
Cdd:cd00284 1 PKLIEVNNSLIDLPPPSNISYWWNFGSLLGTCLVIQILTGVFLAMHYTPDVTLAFSSVQYIMRDVNFGWLIRSLHANGAS 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 337734001 90 FFFICVYLHIARGFYYGSY--LYKETWNTGIILLLTLMATAFVGYVLPWGQMSFWGATVITNLFSAIPYIGHTLVEWAWG 167
Cdd:cd00284 81 MFFLMLYLHIFRGLYYGSYkkPRELTWVIGVILLLLTMATAFMGYVLPWGQMSYWGATVITNLFSAIPVIGITLVEWLWG 160
|
...
gi 337734001 168 GFS 170
Cdd:cd00284 161 GFS 163
|
|
| Cytochrome_B |
pfam00033 |
Cytochrome b/b6/petB; |
19-170 |
1.45e-65 |
|
Cytochrome b/b6/petB;
Pssm-ID: 306530 Cd Length: 189 Bit Score: 198.76 E-value: 1.45e-65
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 337734001 19 LIDLPTPSNISAWWNFGSLLGICLATQILTGLLLAAHYTADTSLAFSSVANMCRNVQYGWLIRNLHANGASFFFICVYLH 98
Cdd:pfam00033 1 VVSLPVPSNLSIWYNFGSLLGLCLAVQILTGVFLAFYYTPDVTLAFLSVQYIMRDVNFGWLIRSVHANGASMFFLMLYLH 80
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 337734001 99 IARGFYYG--SYLYKETWNTGIILLLTLMATAFVGYVLPWGQMSFWGATVITNLFSAIPYIGHTLVEWAWGGFS 170
Cdd:pfam00033 81 IFRGLYYGgfSYPRELTWVIGVILLVLTMSTAFIGYVLPWGQMSYWGATVITNLLSAIPVIGDTLVEWIWGSFS 154
|
|
| QcrB/PetB |
COG1290 |
Cytochrome b subunit of the bc complex [Energy production and conversion]; |
10-170 |
6.26e-63 |
|
Cytochrome b subunit of the bc complex [Energy production and conversion];
Pssm-ID: 440901 [Multi-domain] Cd Length: 393 Bit Score: 198.48 E-value: 6.26e-63
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 337734001 10 PLLKMVNNSLiDLPTPSNISAWWNFGSLLGICLATQILTGLLLAAHYTADTSLAFSSVANMCRNVQYGWLIRNLHANGAS 89
Cdd:COG1290 19 PLASLVREHL-EYPFPKNWNFSYWFGELALYSFVIQILTGIFLTMYYKPSASEAFASVEYIMRDVPGGWLIRYMHHWGAS 97
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 337734001 90 FFFICVYLHIARGFYYGSylYKE----TWNTGIILLLTLMATAFVGYVLPWGQMSFWGATVITNLFSAIPYIGHTLVEWA 165
Cdd:COG1290 98 LFFAAVYLHMFRGFFYGA--YKKprelNWIIGVLLLLLTMAEAFTGYSLPWDQLSYWGARVITGLFGAIPVIGTWLVTWL 175
|
....*
gi 337734001 166 WGGFS 170
Cdd:COG1290 176 FGGEF 180
|
|
|
|
Name |
Accession |
Description |
Interval |
E-value |
| CYTB |
MTH00119 |
cytochrome b; Provisional |
1-170 |
1.27e-129 |
|
cytochrome b; Provisional
Pssm-ID: 214425 [Multi-domain] Cd Length: 380 Bit Score: 368.07 E-value: 1.27e-129
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 337734001 1 MAPNLRKHHPLLKMVNNSLIDLPTPSNISAWWNFGSLLGICLATQILTGLLLAAHYTADTSLAFSSVANMCRNVQYGWLI 80
Cdd:MTH00119 1 MAPNLRKSHPLLKIINNSLIDLPTPSNISAWWNFGSLLGLCLITQILTGLFLAMHYTADISLAFSSVAHICRDVQYGWLI 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 337734001 81 RNLHANGASFFFICVYLHIARGFYYGSYLYKETWNTGIILLLTLMATAFVGYVLPWGQMSFWGATVITNLFSAIPYIGHT 160
Cdd:MTH00119 81 RNLHANGASMFFICIYLHIGRGLYYGSYLYKETWNTGVILLLLLMATAFVGYVLPWGQMSFWGATVITNLLSAIPYIGQT 160
|
170
....*....|
gi 337734001 161 LVEWAWGGFS 170
Cdd:MTH00119 161 LVEWIWGGFS 170
|
|
| CYTB |
MTH00100 |
cytochrome b; Provisional |
4-170 |
5.26e-116 |
|
cytochrome b; Provisional
Pssm-ID: 177162 [Multi-domain] Cd Length: 379 Bit Score: 333.53 E-value: 5.26e-116
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 337734001 4 NLRKHHPLLKMVNNSLIDLPTPSNISAWWNFGSLLGICLATQILTGLLLAAHYTADTSLAFSSVANMCRNVQYGWLIRNL 83
Cdd:MTH00100 3 NIRKTHPLMKIINHSFIDLPAPSNISSWWNFGSLLGICLILQILTGLFLAMHYTSDTTTAFSSVAHICRDVNYGWIIRYL 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 337734001 84 HANGASFFFICVYLHIARGFYYGSYLYKETWNTGIILLLTLMATAFVGYVLPWGQMSFWGATVITNLFSAIPYIGHTLVE 163
Cdd:MTH00100 83 HANGASMFFICLFLHVGRGLYYGSYLFLETWNIGIILLFTVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGTTLVE 162
|
....*..
gi 337734001 164 WAWGGFS 170
Cdd:MTH00100 163 WIWGGFS 169
|
|
| CYTB |
MTH00131 |
cytochrome b; Provisional |
1-170 |
3.37e-115 |
|
cytochrome b; Provisional
Pssm-ID: 177189 [Multi-domain] Cd Length: 380 Bit Score: 331.23 E-value: 3.37e-115
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 337734001 1 MApNLRKHHPLLKMVNNSLIDLPTPSNISAWWNFGSLLGICLATQILTGLLLAAHYTADTSLAFSSVANMCRNVQYGWLI 80
Cdd:MTH00131 1 MA-SLRKTHPLLKIANDALVDLPAPSNISVWWNFGSLLGLCLITQILTGLFLAMHYTSDISTAFSSVAHICRDVNYGWLI 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 337734001 81 RNLHANGASFFFICVYLHIARGFYYGSYLYKETWNTGIILLLTLMATAFVGYVLPWGQMSFWGATVITNLFSAIPYIGHT 160
Cdd:MTH00131 80 RNLHANGASFFFICIYLHIGRGLYYGSYLYKETWNIGVVLLLLVMMTAFVGYVLPWGQMSFWGATVITNLLSAVPYVGNT 159
|
170
....*....|
gi 337734001 161 LVEWAWGGFS 170
Cdd:MTH00131 160 LVQWIWGGFS 169
|
|
| CYTB |
MTH00074 |
cytochrome b; Provisional |
1-170 |
4.39e-115 |
|
cytochrome b; Provisional
Pssm-ID: 177145 [Multi-domain] Cd Length: 380 Bit Score: 330.87 E-value: 4.39e-115
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 337734001 1 MAPNLRKHHPLLKMVNNSLIDLPTPSNISAWWNFGSLLGICLATQILTGLLLAAHYTADTSLAFSSVANMCRNVQYGWLI 80
Cdd:MTH00074 1 MAHPIRKTHPLLKIINNSFIDLPTPSNLSSLWNFGSLLGVCLIAQIITGLFLAMHYTADTSSAFSSVAHICRDVNYGWLM 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 337734001 81 RNLHANGASFFFICVYLHIARGFYYGSYLYKETWNTGIILLLTLMATAFVGYVLPWGQMSFWGATVITNLFSAIPYIGHT 160
Cdd:MTH00074 81 RNIHANGASFFFICIYLHIGRGLYYGSYMYKETWNIGVILLFLVMATAFVGYVLPWGQMSFWGATVITNLLSAIPYMGDT 160
|
170
....*....|
gi 337734001 161 LVEWAWGGFS 170
Cdd:MTH00074 161 LVQWIWGGFS 170
|
|
| CYTB |
MTH00191 |
cytochrome b; Provisional |
5-170 |
5.60e-108 |
|
cytochrome b; Provisional
Pssm-ID: 177239 [Multi-domain] Cd Length: 365 Bit Score: 312.62 E-value: 5.60e-108
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 337734001 5 LRKHHPLLKMVNNSLIDLPTPSNISAWWNFGSLLGICLATQILTGLLLAAHYTADTSLAFSSVANMCRNVQYGWLIRNLH 84
Cdd:MTH00191 1 MRKTHPLLKIVNGSLIDLPSPSNISYWWNFGSLLGLCLIIQILTGLFLAMHYTADISLAFSSVVHICRDVNYGWLLRNIH 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 337734001 85 ANGASFFFICVYLHIARGFYYGSYLYKETWNTGIILLLTLMATAFVGYVLPWGQMSFWGATVITNLFSAIPYIGHTLVEW 164
Cdd:MTH00191 81 ANGASFFFICIYLHIGRGLYYGSYLNKETWNVGVILLILSMATAFLGYVLPWGQMSFWGATVITNLLSAIPYIGDDLVQW 160
|
....*.
gi 337734001 165 AWGGFS 170
Cdd:MTH00191 161 LWGGFS 166
|
|
| CYTB |
MTH00156 |
cytochrome b; Provisional |
12-170 |
6.17e-108 |
|
cytochrome b; Provisional
Pssm-ID: 214440 [Multi-domain] Cd Length: 356 Bit Score: 312.10 E-value: 6.17e-108
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 337734001 12 LKMVNNSLIDLPTPSNISAWWNFGSLLGICLATQILTGLLLAAHYTADTSLAFSSVANMCRNVQYGWLIRNLHANGASFF 91
Cdd:MTH00156 1 LKIINNSLIDLPTPSNISYWWNFGSLLGLCLMIQIITGLFLAMHYTADIELAFSSVIHICRDVNYGWLLRTLHANGASFF 80
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 337734001 92 FICVYLHIARGFYYGSYLYKETWNTGIILLLTLMATAFVGYVLPWGQMSFWGATVITNLFSAIPYIGHTLVEWAWGGFS 170
Cdd:MTH00156 81 FICIYLHIGRGIYYGSYKLKHTWMSGVIILFLVMATAFLGYVLPWGQMSFWGATVITNLLSAIPYLGTDLVQWIWGGFS 159
|
|
| CYTB |
MTH00145 |
cytochrome b; Provisional |
5-170 |
1.62e-101 |
|
cytochrome b; Provisional
Pssm-ID: 177203 [Multi-domain] Cd Length: 379 Bit Score: 296.43 E-value: 1.62e-101
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 337734001 5 LRKHHPLLKMVNNSLIDLPTPSNISAWWNFGSLLGICLATQILTGLLLAAHYTADTSLAFSSVANMCRNVQYGWLIRNLH 84
Cdd:MTH00145 5 LRKSHPVLKVVNGSLYDLPAPVNLSIWWNFGSLLGLCLGIQILTGLFLSMHYTAHVDLAFSSVIHIMRDVNYGWLLRSLH 84
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 337734001 85 ANGASFFFICVYLHIARGFYYGSYLYKETWNTGIILLLTLMATAFVGYVLPWGQMSFWGATVITNLFSAIPYIGHTLVEW 164
Cdd:MTH00145 85 ANGASFFFICIYLHIGRGLYYGSYLMQHTWNIGVTLLLLSMGTAFLGYVLPWGQMSFWGATVITNLLSAIPYVGKMLVEW 164
|
....*.
gi 337734001 165 AWGGFS 170
Cdd:MTH00145 165 VWGGFS 170
|
|
| CYTB |
MTH00034 |
cytochrome b; Validated |
5-170 |
3.58e-100 |
|
cytochrome b; Validated
Pssm-ID: 177109 [Multi-domain] Cd Length: 379 Bit Score: 293.15 E-value: 3.58e-100
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 337734001 5 LRKHHPLLKMVNNSLIDLPTPSNISAWWNFGSLLGICLATQILTGLLLAAHYTADTSLAFSSVANMCRNVQYGWLIRNLH 84
Cdd:MTH00034 4 LRKSHPLFKILNSSLIDLPSPSNLSIWWNFGSLLGLCLIIQIITGIFLAMHYTADISLAFSSVSHICRDVNYGWLLRNIH 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 337734001 85 ANGASFFFICVYLHIARGFYYGSYLYKETWNTGIILLLTLMATAFVGYVLPWGQMSFWGATVITNLFSAIPYIGHTLVEW 164
Cdd:MTH00034 84 ANGASLFFICLYFHIGRGLYYGSYVNIETWNIGVILFLLTMLTAFVGYVLPWGQMSFWAATVITNLVSAVPYIGTDIVQW 163
|
....*.
gi 337734001 165 AWGGFS 170
Cdd:MTH00034 164 IWGGFS 169
|
|
| CYTB |
MTH00016 |
cytochrome b; Validated |
1-170 |
2.04e-97 |
|
cytochrome b; Validated
Pssm-ID: 177102 [Multi-domain] Cd Length: 378 Bit Score: 286.19 E-value: 2.04e-97
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 337734001 1 MAPNLRKHHPLLKMVNNSLIDLPTPSNISAWWNFGSLLGICLATQILTGLLLAAHYTADTSLAFSSVANMCRNVQYGWLI 80
Cdd:MTH00016 1 MFSPMRKTHPLIKIMNGSLVDLPAPSNLSIWWNFGSLLGLCLVIQILTGLFLSMHYTPHIDLAFSSVAHISRDVNYGWLL 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 337734001 81 RNLHANGASFFFICVYLHIARGFYYGSYLYKETWNTGIILLLTLMATAFVGYVLPWGQMSFWGATVITNLFSAIPYIGHT 160
Cdd:MTH00016 81 RNLHANGASFFFICLYLHIGRGIYYGSYFLMETWNIGVILLLLTMATAFLGYVLPWGQMSFWGATVITNLLSAIPYIGKM 160
|
170
....*....|
gi 337734001 161 LVEWAWGGFS 170
Cdd:MTH00016 161 LVQWLWGGFS 170
|
|
| CYTB |
MTH00022 |
cytochrome b; Validated |
5-170 |
7.98e-83 |
|
cytochrome b; Validated
Pssm-ID: 164595 [Multi-domain] Cd Length: 379 Bit Score: 248.85 E-value: 7.98e-83
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 337734001 5 LRKHHPLLKMVNNSLIDLPTPSNISAWWNFGSLLGICLATQILTGLLLAAHYTADTSLAFSSVANMCRNVQYGWLIRNLH 84
Cdd:MTH00022 3 LRKENPLLSIVNGFLVDLPSPSNISYLWNFGSLLGLCLVIQIITGCFLSMHYCSDVSLAFASVGHIMRDVNYGFLLRYLH 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 337734001 85 ANGASFFFICVYLHIARGFYYGSYLYKETWNTGIILLLTLMATAFVGYVLPWGQMSFWGATVITNLFSAIPYIGHTLVEW 164
Cdd:MTH00022 83 ANGASLFFLCLYIHIGRGLYYGGYLKFHVWNVGVVIFLLTMATAFMGYVLPWGQMSFWGATVITNLLSAIPYVGTDIVQW 162
|
....*.
gi 337734001 165 AWGGFS 170
Cdd:MTH00022 163 VWGGFS 168
|
|
| CYTB |
MTH00224 |
cytochrome b; Provisional |
1-170 |
8.15e-83 |
|
cytochrome b; Provisional
Pssm-ID: 164767 [Multi-domain] Cd Length: 379 Bit Score: 249.07 E-value: 8.15e-83
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 337734001 1 MAPNLRKHHPLLKMVNNSLIDLPTPSNISAWWNFGSLLGICLATQILTGLLLAAHYTADTSLAFSSVANMCRNVQYGWLI 80
Cdd:MTH00224 1 MFKPFRTTHPAIKILNGSLIDLPAPNNISIWWNYGSLLGLCLVIQVLTGLFLSMHYAPNIEMAFSSVAHISRDVNYGWLL 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 337734001 81 RNLHANGASFFFICVYLHIARGFYYGSYLYKETWNTGIILLLTLMATAFVGYVLPWGQMSFWGATVITNLFSAIPYIGHT 160
Cdd:MTH00224 81 RSIHANGASMFFLFIYLHVGRGLYYGSFNLSETWNIGVILFILTMATAFLGYVLPWGQMSFWGATVITNLFSAIPYIGKD 160
|
170
....*....|
gi 337734001 161 LVEWAWGGFS 170
Cdd:MTH00224 161 LVEWIWGGFA 170
|
|
| CYTB |
MTH00053 |
cytochrome b; Provisional |
1-170 |
7.48e-81 |
|
cytochrome b; Provisional
Pssm-ID: 164624 [Multi-domain] Cd Length: 381 Bit Score: 243.85 E-value: 7.48e-81
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 337734001 1 MAPNLRKHHPLLKMVNNSLIDLPTPSNISAWWNFGSLLGICLATQILTGLLLAAHYTADTSLAFSSVANMCRNVQYGWLI 80
Cdd:MTH00053 1 MTKTIRKENPVISLVNSMFIDLPSPSNISYLWNFGSLLGFCLIIQIITGIFLAMHYCADVNLAFSSVAHITRDVNYGFIL 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 337734001 81 RNLHANGASFFFICVYLHIARGFYYGSYLYKETWNTGIILLLTLMATAFVGYVLPWGQMSFWGATVITNLFSAIPYIGHT 160
Cdd:MTH00053 81 RYLHANGASMFFLCVYFHIGRGIYYGSYTKIIVWNVGVLIFLLMILTAFIGYVLPWGQMSFWAATVITNLLSAIPYVGDD 160
|
170
....*....|
gi 337734001 161 LVEWAWGGFS 170
Cdd:MTH00053 161 IVRWVWGGFS 170
|
|
| Cytochrome_b_N |
cd00284 |
Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit ... |
10-170 |
2.33e-76 |
|
Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit mitochondrial respiratory enzyme. Cytochrome b spans the mitochondrial membrane with 8 transmembrane helices (A-H) in eukaryotes. In plants and cyanobacteria, cytochrome b6 is analogous to eukaryote cytochrome b, containing two chains: helices A-D are encoded by the petB gene and helices E-H are encoded by the petD gene in these organisms. Cytochrome b/b6 contains two bound hemes and two ubiquinol/ubiquinone binding sites. The C-terminal portion of cytochrome b is described in a separate CD.
Pssm-ID: 238176 Cd Length: 200 Bit Score: 226.48 E-value: 2.33e-76
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 337734001 10 PLLKMVNNSLIDLPTPSNISAWWNFGSLLGICLATQILTGLLLAAHYTADTSLAFSSVANMCRNVQYGWLIRNLHANGAS 89
Cdd:cd00284 1 PKLIEVNNSLIDLPPPSNISYWWNFGSLLGTCLVIQILTGVFLAMHYTPDVTLAFSSVQYIMRDVNFGWLIRSLHANGAS 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 337734001 90 FFFICVYLHIARGFYYGSY--LYKETWNTGIILLLTLMATAFVGYVLPWGQMSFWGATVITNLFSAIPYIGHTLVEWAWG 167
Cdd:cd00284 81 MFFLMLYLHIFRGLYYGSYkkPRELTWVIGVILLLLTMATAFMGYVLPWGQMSYWGATVITNLFSAIPVIGITLVEWLWG 160
|
...
gi 337734001 168 GFS 170
Cdd:cd00284 161 GFS 163
|
|
| Cytochrome_B |
pfam00033 |
Cytochrome b/b6/petB; |
19-170 |
1.45e-65 |
|
Cytochrome b/b6/petB;
Pssm-ID: 306530 Cd Length: 189 Bit Score: 198.76 E-value: 1.45e-65
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 337734001 19 LIDLPTPSNISAWWNFGSLLGICLATQILTGLLLAAHYTADTSLAFSSVANMCRNVQYGWLIRNLHANGASFFFICVYLH 98
Cdd:pfam00033 1 VVSLPVPSNLSIWYNFGSLLGLCLAVQILTGVFLAFYYTPDVTLAFLSVQYIMRDVNFGWLIRSVHANGASMFFLMLYLH 80
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 337734001 99 IARGFYYG--SYLYKETWNTGIILLLTLMATAFVGYVLPWGQMSFWGATVITNLFSAIPYIGHTLVEWAWGGFS 170
Cdd:pfam00033 81 IFRGLYYGgfSYPRELTWVIGVILLVLTMSTAFIGYVLPWGQMSYWGATVITNLLSAIPVIGDTLVEWIWGSFS 154
|
|
| CYTB |
MTH00033 |
cytochrome b; Provisional |
17-170 |
1.75e-65 |
|
cytochrome b; Provisional
Pssm-ID: 133672 [Multi-domain] Cd Length: 383 Bit Score: 204.79 E-value: 1.75e-65
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 337734001 17 NSLIDLPTPSNISAWWNFGSLLGICLATQILTGLLLAAHYTADTSLAFSSVANMCRNVQYGWLIRNLHANGASFFFICVY 96
Cdd:MTH00033 13 NDIIDLPTPSNISYWWNFGSLLCLCLGIQILTGVLLAMHYRSDVSLAFSSVAHIVRDVNYGWILRYVHANGASLFFICVY 92
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 337734001 97 LHIARGFYYGSYLYKETWNTGIILLLTLMATAFVGYVLPWGQMSFWGATVITNLFSAIPYIGHTLVEWAWGGFS 170
Cdd:MTH00033 93 CHIGRGLYYGGYSRVLTWIVGVLIFFIMMLTAFIGYVLPWGQMSFWAATVITNLVSAIPSVGGSIVEWIWGGFS 166
|
|
| QcrB/PetB |
COG1290 |
Cytochrome b subunit of the bc complex [Energy production and conversion]; |
10-170 |
6.26e-63 |
|
Cytochrome b subunit of the bc complex [Energy production and conversion];
Pssm-ID: 440901 [Multi-domain] Cd Length: 393 Bit Score: 198.48 E-value: 6.26e-63
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 337734001 10 PLLKMVNNSLiDLPTPSNISAWWNFGSLLGICLATQILTGLLLAAHYTADTSLAFSSVANMCRNVQYGWLIRNLHANGAS 89
Cdd:COG1290 19 PLASLVREHL-EYPFPKNWNFSYWFGELALYSFVIQILTGIFLTMYYKPSASEAFASVEYIMRDVPGGWLIRYMHHWGAS 97
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 337734001 90 FFFICVYLHIARGFYYGSylYKE----TWNTGIILLLTLMATAFVGYVLPWGQMSFWGATVITNLFSAIPYIGHTLVEWA 165
Cdd:COG1290 98 LFFAAVYLHMFRGFFYGA--YKKprelNWIIGVLLLLLTMAEAFTGYSLPWDQLSYWGARVITGLFGAIPVIGTWLVTWL 175
|
....*
gi 337734001 166 WGGFS 170
Cdd:COG1290 176 FGGEF 180
|
|
| CYTB |
MTH00086 |
cytochrome b; Provisional |
13-170 |
4.86e-60 |
|
cytochrome b; Provisional
Pssm-ID: 177151 [Multi-domain] Cd Length: 355 Bit Score: 189.77 E-value: 4.86e-60
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 337734001 13 KMVNNSLIDLPTPSNISAWWNFGSLLGICLATQILTGLLLAAHYTADTSLAFSSVANMCRNVQYGWLIRNLHANGASFFF 92
Cdd:MTH00086 1 NFVNSLVVTLPSSKSLSYWWNFGSMLGMVLVFQILTGTFLAFYYTADSSMAFSSVQYIMYEVNFGWLFRIFHFNGASLFF 80
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 337734001 93 ICVYLHIARGFYYGSYLYKETWNTGIILLLTLMATAFVGYVLPWGQMSFWGATVITNLFSAIPYIGHTLVEWAWGGFS 170
Cdd:MTH00086 81 IFLYLHIFKGLFMMSYRLKKVWISGLTIYLLVMMEAFMGYVLVWAQMSFWAAVVITSLLSVIPIWGPSIVMWIWGGFG 158
|
|
| CYTB |
MTH00046 |
cytochrome b; Validated |
11-170 |
8.45e-41 |
|
cytochrome b; Validated
Pssm-ID: 177121 [Multi-domain] Cd Length: 355 Bit Score: 140.12 E-value: 8.45e-41
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 337734001 11 LLKMVNNSLIDLPTPSNISAWWNFGSLLGICLATQILTGLLLAAHYTADTSLAFSSVANMCRNVQYGWLIRNLHANGASF 90
Cdd:MTH00046 1 MISLIRRNLIDLPTNYSLNYYWCSGFVLSVFMVIQVLTGVLLSLLYVADSLCSFFCVMSLSNDSFFTWCVRYWHIWGVNV 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 337734001 91 FFICVYLHIARGFYYGSYLYKETWNTGIILLLTLMATAFVGYVLPWGQMSFWGATVITNLFSAIPYIGHTLVEWAWGGFS 170
Cdd:MTH00046 81 LFILLFIHMGRALYYSSYSKKGVWNVGFILYLLVMVEAFLGYILPWHQMSYWAATVLTSIVDSVPIVGSLVYKYIVGGFS 160
|
|
| PRK03735 |
PRK03735 |
cytochrome b6; Provisional |
34-168 |
3.33e-24 |
|
cytochrome b6; Provisional
Pssm-ID: 179639 Cd Length: 223 Bit Score: 94.01 E-value: 3.33e-24
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 337734001 34 FGSLLGICLATQILTGLLLAAHYTADTSLAFSSVANMCRNVQYGWLIRNLHANGASFFFICVYLHIARGFYYGSYLYKE- 112
Cdd:PRK03735 44 FGGLTFFCFVIQILSGMFLTMYYVPDIKNAYESVYYLQNEVAFGWIVRGMHHWGASLVIVMMFLHTLRVFFTGGYKKPRe 123
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....*..
gi 337734001 113 -TWNTGIILLLTLMATAFVGYVLPWGQMSFWGATVITNLFSAIPYIGHTLVEWAWGG 168
Cdd:PRK03735 124 lNWVVGVLIFFVTVGLGFTGYLLPWDQKAYFATKVGSQIAEAIPVIGDFIKTLLRGG 180
|
|
| Cytochrom_B_N_2 |
pfam13631 |
Cytochrome b(N-terminal)/b6/petB; |
89-169 |
8.67e-23 |
|
Cytochrome b(N-terminal)/b6/petB;
Pssm-ID: 433364 Cd Length: 169 Bit Score: 88.84 E-value: 8.67e-23
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 337734001 89 SFFFICVYLHIARGFYYGSYLYKE--TWNTGIILLLTLMATAFVGYVLPWGQMSFWGATVITNLFSAIPYIGHTLVEWAW 166
Cdd:pfam13631 1 YIFIAAIYVHMLRIFFTGAYRKPRelNWIIGVLLLLLTLGEGFTGYSLPDDLLSGTGLRIGLGILSSIPVVGTWLVWLLF 80
|
...
gi 337734001 167 GGF 169
Cdd:pfam13631 81 GGP 83
|
|
| petB |
CHL00070 |
cytochrome b6 |
25-170 |
1.29e-21 |
|
cytochrome b6
Pssm-ID: 177009 Cd Length: 215 Bit Score: 87.08 E-value: 1.29e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 337734001 25 PSNISAWWNFGSLLGICLATQILTGLLLAAHYTADTSLAFSSVANMCRNVQYGWLIRNLHANGASFFFICVYLHIARGFY 104
Cdd:CHL00070 27 PPHVNIFYCLGGITLTCFLVQVATGFAMTFYYRPTVTEAFASVQYIMTEVNFGWLIRSVHRWSASMMVLMMILHVFRVYL 106
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 337734001 105 YGSYLYKE--TWNTGIILLLTLMATAFVGYVLPWGQMSFWGATVITNLFSAIPYIGHTLVEWAWGGFS 170
Cdd:CHL00070 107 TGGFKKPRelTWVTGVVLAVLTVSFGVTGYSLPWDQIGYWAVKIVTGVPEAIPVIGSPLVELLRGSVS 174
|
|
|