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Conserved domains on  [gi|333236178|ref|YP_004465010|]
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NADH dehydrogenase subunit 6 (mitochondrion) [Brotogeris cyanoptera]

Protein Classification

NADH dehydrogenase subunit 6( domain architecture ID 10009572)

NADH dehydrogenase subunit 6 is the core subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I) that functions in the transfer of electrons from NADH to the respiratory chain

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
ND6 MTH00115
NADH dehydrogenase subunit 6; Provisional
 1-167 9.14e-48

NADH dehydrogenase subunit 6; Provisional


:

Pssm-ID: 214424  Cd Length: 174  Bit Score: 152.60  E-value: 9.14e-48
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 333236178   1 MTYFVLALGVGFVLAALLVASNPSPYYGAVGLGFGSVVGCGWLVSLGASFVALALFMVYLGGMLVVFVYSVSLAADPFPQ 80
Cdd:MTH00115   1 MMYFVFLLGVCFVLGVVGVASNPSPYYGVVSLVLASVFGCGVLVSLGGSFVSLVLFLVYLGGMLVVFAYSVSLAADPYPE 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 333236178  81 VWGGWRAVVYAFVVLLAV-------GAGMVGWGLGVQVVDSVGLFFVRLDFSGVALFYSCGVGVFLVAGWGLLLTLFVVL 153
Cdd:MTH00115  81 AWGDWGVVGYVVGFVLVVvvvgvvvGGLWGMEGVGVVTVDSGGLFVVRLDFSGVSLFYSSGGGGLLVCGWGLLLTLFVVL 160

                        170
                 ....*....|....
gi 333236178 154 ELVRGLSRGTIRAV 167
Cdd:MTH00115 161 ELVRGLSRGALRAF 174
 
Name Accession Description Interval E-value
ND6 MTH00115
NADH dehydrogenase subunit 6; Provisional
 1-167 9.14e-48

NADH dehydrogenase subunit 6; Provisional


Pssm-ID: 214424  Cd Length: 174  Bit Score: 152.60  E-value: 9.14e-48
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 333236178   1 MTYFVLALGVGFVLAALLVASNPSPYYGAVGLGFGSVVGCGWLVSLGASFVALALFMVYLGGMLVVFVYSVSLAADPFPQ 80
Cdd:MTH00115   1 MMYFVFLLGVCFVLGVVGVASNPSPYYGVVSLVLASVFGCGVLVSLGGSFVSLVLFLVYLGGMLVVFAYSVSLAADPYPE 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 333236178  81 VWGGWRAVVYAFVVLLAV-------GAGMVGWGLGVQVVDSVGLFFVRLDFSGVALFYSCGVGVFLVAGWGLLLTLFVVL 153
Cdd:MTH00115  81 AWGDWGVVGYVVGFVLVVvvvgvvvGGLWGMEGVGVVTVDSGGLFVVRLDFSGVSLFYSSGGGGLLVCGWGLLLTLFVVL 160

                        170
                 ....*....|....
gi 333236178 154 ELVRGLSRGTIRAV 167
Cdd:MTH00115 161 ELVRGLSRGALRAF 174
Oxidored_q3 pfam00499
NADH-ubiquinone/plastoquinone oxidoreductase chain 6;
17-155 1.31e-10

NADH-ubiquinone/plastoquinone oxidoreductase chain 6;


Pssm-ID: 459832 [Multi-domain]  Cd Length: 141  Bit Score: 55.97  E-value: 1.31e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 333236178   17 LLVASNPSPYYGAVGLGFGSVVGCGWLVSLGASFVALALFMVYLGGMLVVFVYSVSLAADPFPQVWGGWRAVVYAFVVLL 96
Cdd:pfam00499   1 LGVVTSRNPVHSALFLVLTFFGVAGLYLLLGAEFLAAVQVLVYVGAIMVLFLFVIMLLLAEEEPEKLRSGLPLAALLLGL 80

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 333236178   97 AVGAGMV---GWGLGVQVVDSVGLFFVRLDFSGVALFYScGVGVFLVAGWGLLLTLFVVLEL 155
Cdd:pfam00499  81 LLLALLLlvlLSASLTPAAAAAAPDVGNIEAIGELLFTD-YLLPFELASVLLLVALVGAIVL 141
 
Name Accession Description Interval E-value
ND6 MTH00115
NADH dehydrogenase subunit 6; Provisional
 1-167 9.14e-48

NADH dehydrogenase subunit 6; Provisional


Pssm-ID: 214424  Cd Length: 174  Bit Score: 152.60  E-value: 9.14e-48
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 333236178   1 MTYFVLALGVGFVLAALLVASNPSPYYGAVGLGFGSVVGCGWLVSLGASFVALALFMVYLGGMLVVFVYSVSLAADPFPQ 80
Cdd:MTH00115   1 MMYFVFLLGVCFVLGVVGVASNPSPYYGVVSLVLASVFGCGVLVSLGGSFVSLVLFLVYLGGMLVVFAYSVSLAADPYPE 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 333236178  81 VWGGWRAVVYAFVVLLAV-------GAGMVGWGLGVQVVDSVGLFFVRLDFSGVALFYSCGVGVFLVAGWGLLLTLFVVL 153
Cdd:MTH00115  81 AWGDWGVVGYVVGFVLVVvvvgvvvGGLWGMEGVGVVTVDSGGLFVVRLDFSGVSLFYSSGGGGLLVCGWGLLLTLFVVL 160

                        170
                 ....*....|....
gi 333236178 154 ELVRGLSRGTIRAV 167
Cdd:MTH00115 161 ELVRGLSRGALRAF 174
ND6 MTH00138
NADH dehydrogenase subunit 6; Provisional
 1-167 8.70e-47

NADH dehydrogenase subunit 6; Provisional


Pssm-ID: 177196  Cd Length: 173  Bit Score: 150.29  E-value: 8.70e-47
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 333236178   1 MTYFVLALGVGFVLAALLVASNPSPYYGAVGLGFGSVVGCGWLVSLGASFVALALFMVYLGGMLVVFVYSVSLAADPFPQ 80
Cdd:MTH00138   1 MTYLMSLFLLGLVLGLVAVASNPSPYFAALGLVVVAGVGCGVLVGHGGSFLSLVLFLIYLGGMLVVFAYSAALAAEPYPE 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 333236178  81 VWGGW----RAVVYAFVVLLAVGAGMVGWGLG--VQVVDSVGLFFVRLDFSGVALFYSCGVGVFLVAGWGLLLTLFVVLE 154
Cdd:MTH00138  81 SWGSWsvlgYVVGYLVGVVLAAGLFWGGWYEGswVVVDELKEFSVLRGDVGGVALMYSSGGGMLVICAWVLLLTLFVVLE 160

                        170
                 ....*....|...
gi 333236178 155 LVRGLSRGTIRAV 167
Cdd:MTH00138 161 LTRGLSRGALRAV 173
ND6 MTH00065
NADH dehydrogenase subunit 6; Provisional
 1-167 1.18e-40

NADH dehydrogenase subunit 6; Provisional


Pssm-ID: 214415  Cd Length: 172  Bit Score: 134.59  E-value: 1.18e-40
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 333236178   1 MTYFVLALGVGFVLAALLVASNPSPYYGAVGLGFGSVVGCGWLVSLGASFVALALFMVYLGGMLVVFVYSVSLAADPFPQ 80
Cdd:MTH00065   1 MMYLGFLGMLGLVVGLVAVASNPSPYFAALGLVLGAVCGCLVLVELGVSFLSLVLFLIYLGGMLVVFAYSAALAAEPYPE 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 333236178  81 VWGGWRAVVYAFVVLLAVGAGMVGWG-----LGVQVVDSVGLFFVRLDFSGVALFYSCGVGVFLVAGWGLLLTLFVVLEL 155
Cdd:MTH00065  81 AWGSWSVLVYVLFYLLLLIVGYILFGcnfslEFLFTNYDTEFSVVGYDWGGVGLMYSSGGWFLMISGWVLLLTLFVVLEV 160

                        170
                 ....*....|..
gi 333236178 156 VRGLSRGTIRAV 167
Cdd:MTH00065 161 TRGLSRGSLRAV 172
ND6 MTH00109
NADH dehydrogenase subunit 6; Provisional
 1-158 5.92e-29

NADH dehydrogenase subunit 6; Provisional


Pssm-ID: 214421  Cd Length: 175  Bit Score: 104.88  E-value: 5.92e-29
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 333236178   1 MTYFVLALGVGFVLAALLVASNPSPYYGAVGLGFGSVVGCGWLVSLGASFVALALFMVYLGGMLVVFVYSVSLAADPFPQ 80
Cdd:MTH00109   2 MMYIVFILSVLFVLGFVGFSSKPSPIYGGLGLIVSGGVGCGIVLSFGGSFLGLMVFLIYLGGMLVVFGYTTAMATEEYPE 81

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 333236178  81 VWGGWRAVVYAFVVLLAVGAGMVGWGLGVQVV---------------DSVGLFFVRLDFSGVALFYSCGVGVFLVAGWGL 145
Cdd:MTH00109  82 TWVSNKVVLGALLLGLLMELLLVLYVLKDDEVevvfnfnglgdwviyDTGGSGFFSEDAMGVAALYSYGTWLVVVTGWSL 161

                        170
                 ....*....|...
gi 333236178 146 LLTLFVVLELVRG 158
Cdd:MTH00109 162 FIGVFVIIEITRG 174
ND6 MTH00214
NADH dehydrogenase subunit 6; Provisional
 1-167 1.16e-23

NADH dehydrogenase subunit 6; Provisional


Pssm-ID: 214461  Cd Length: 168  Bit Score: 90.82  E-value: 1.16e-23
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 333236178   1 MTYFVLALGVGFVLAALLVASNPSPYYGAVGLGFGSVVGCGWLVSLGASFVALALFMVYLGGMLVVFVYSVSLAADPFPQ 80
Cdd:MTH00214   1 MLYFVFLLMFGFLLGLMMVASSPSPYFGALGLVLLALLGCFLLLSHGNSFLGLILFLIYLGGMLVVFSYSAALAADPYPE 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 333236178  81 VWGGWRAVVYAFVVLLAVGAGMVGWGLGVQVVDSVGL-FFVRLDFSGVALFYSCGVGVFLVAGWGLLLTLFVVLELVRGL 159
Cdd:MTH00214  81 SWGGWSVLLFFLFYLLGLGFVGFYFYGGWEMLSWMGVdEANNLDLSGVSDLYSRGFFLLLLGGVVLFLVLFVVLELVRGL 160


                 ....*...
gi 333236178 160 SRGTIRAV 167
Cdd:MTH00214 161 SRGALRVV 168
ND6 MTH00045
NADH dehydrogenase subunit 6; Validated
 13-166 1.69e-13

NADH dehydrogenase subunit 6; Validated


Pssm-ID: 177120  Cd Length: 162  Bit Score: 64.16  E-value: 1.69e-13
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 333236178  13 VLAALLVASNPSPYYGAVGLGFGSVVGCGWLVSLGASFVALALFMVYLGGMLVVFVYSVSLAADPFPQVWGGWRAVVYAF 92
Cdd:MTH00045  11 LFGSTLVFYSLSPYYSALGLVLVSLSGCLLLSLLGLSFLALLLLLIYMGGMLVVFVYSSALSAERYPSVSNLGEVLVLSL 90

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 333236178  93 VVLLAVGAGMVGWglgVQVVDSVGLFFVRLDFSGVALFYSCGVGVFLVAGWGLLLTLFVVLELVRGLSRGTIRA 166
Cdd:MTH00045  91 LLSLWVFISFDNF---LELSNNNWSLVSLSDLVGSSELYNSGGLYLLLGGFILLVALVVALVISFGHEYSSLRA 161
Oxidored_q3 pfam00499
NADH-ubiquinone/plastoquinone oxidoreductase chain 6;
17-155 1.31e-10

NADH-ubiquinone/plastoquinone oxidoreductase chain 6;


Pssm-ID: 459832 [Multi-domain]  Cd Length: 141  Bit Score: 55.97  E-value: 1.31e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 333236178   17 LLVASNPSPYYGAVGLGFGSVVGCGWLVSLGASFVALALFMVYLGGMLVVFVYSVSLAADPFPQVWGGWRAVVYAFVVLL 96
Cdd:pfam00499   1 LGVVTSRNPVHSALFLVLTFFGVAGLYLLLGAEFLAAVQVLVYVGAIMVLFLFVIMLLLAEEEPEKLRSGLPLAALLLGL 80

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 333236178   97 AVGAGMV---GWGLGVQVVDSVGLFFVRLDFSGVALFYScGVGVFLVAGWGLLLTLFVVLEL 155
Cdd:pfam00499  81 LLLALLLlvlLSASLTPAAAAAAPDVGNIEAIGELLFTD-YLLPFELASVLLLVALVGAIVL 141
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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