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Conserved domains on  [gi|332994252|gb|AEF04307|]
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hypothetical protein ambt_13945 [Alteromonas naphthalenivorans]

Protein Classification

EscU/YscU/HrcU family type III secretion system export apparatus switch protein( domain architecture ID 10006226)

EscU/YscU/HrcU family type III secretion system export apparatus switch protein similar to Bacillus subtilis uncharacterized protein YlqH

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
YlqH COG2257
Type III secretion system substrate exporter, FlhB-like [Intracellular trafficking, secretion, ...
 2-93 2.13e-39

Type III secretion system substrate exporter, FlhB-like [Intracellular trafficking, secretion, and vesicular transport];


:

Pssm-ID: 441858 [Multi-domain]  Cd Length: 95  Bit Score: 126.07  E-value: 2.13e-39
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 332994252   2 SEKAKRAIGLKYDGGdKKTAPKVVAKGYGDLAEAIIAMAEESGILIHEDPYLSEVLSTLDLGQDIPESLYFVIAELLAYS 81
Cdd:COG2257    5 KKKRKKAVALKYDGE-KDNAPKVVAKGKGELAEKIIELAKEHGVPVHEDPELVELLSQLDLGDEIPPELYQAVAEILAFI 83

                         90
                 ....*....|..
gi 332994252  82 YVLQGKIPPGWE 93
Cdd:COG2257   84 YRLDGKAPEGKP 95
 
Name Accession Description Interval E-value
YlqH COG2257
Type III secretion system substrate exporter, FlhB-like [Intracellular trafficking, secretion, ...
 2-93 2.13e-39

Type III secretion system substrate exporter, FlhB-like [Intracellular trafficking, secretion, and vesicular transport];


Pssm-ID: 441858 [Multi-domain]  Cd Length: 95  Bit Score: 126.07  E-value: 2.13e-39
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 332994252   2 SEKAKRAIGLKYDGGdKKTAPKVVAKGYGDLAEAIIAMAEESGILIHEDPYLSEVLSTLDLGQDIPESLYFVIAELLAYS 81
Cdd:COG2257    5 KKKRKKAVALKYDGE-KDNAPKVVAKGKGELAEKIIELAKEHGVPVHEDPELVELLSQLDLGDEIPPELYQAVAEILAFI 83

                         90
                 ....*....|..
gi 332994252  82 YVLQGKIPPGWE 93
Cdd:COG2257   84 YRLDGKAPEGKP 95
Bac_export_2 pfam01312
FlhB HrpN YscU SpaS Family; This family includes the following members: FlhB, HrpN, YscU, SpaS, ...
 8-80 8.59e-18

FlhB HrpN YscU SpaS Family; This family includes the following members: FlhB, HrpN, YscU, SpaS, HrcU SsaU and YopU. All of these proteins export peptides using the type III secretion system. The peptides exported are quite diverse.


Pssm-ID: 460157  Cd Length: 338  Bit Score: 75.94  E-value: 8.59e-18
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 332994252    8 AIGLKYDGGdKKTAPKVVAKGYGDLAEAIIAMAEESGILIHEDPYLSEVL-STLDLGQDIPESLYFVIAELLAY 80
Cdd:pfam01312 265 AVALKYDPG-KMPAPVVVAKGADELALRIREIAREHGVPIVENPPLARALyATVEVGQEIPEELYQAVAEVLAY 337
flhB PRK05702
flagellar type III secretion system protein FlhB;
8-82 2.34e-17

flagellar type III secretion system protein FlhB;


Pssm-ID: 235569  Cd Length: 359  Bit Score: 75.19  E-value: 2.34e-17
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 332994252   8 AIGLKYDGGdKKTAPKVVAKGYGDLAEAIIAMAEESGILIHEDPYLSEVL-STLDLGQDIPESLYFVIAELLAYSY 82
Cdd:PRK05702 274 AVALKYDRG-KMAAPVVVAKGVDEVALKIREIAREHNVPIVENPPLARALyATVEIGQEIPEELYKAVAEVLAYVY 348
 
Name Accession Description Interval E-value
YlqH COG2257
Type III secretion system substrate exporter, FlhB-like [Intracellular trafficking, secretion, ...
 2-93 2.13e-39

Type III secretion system substrate exporter, FlhB-like [Intracellular trafficking, secretion, and vesicular transport];


Pssm-ID: 441858 [Multi-domain]  Cd Length: 95  Bit Score: 126.07  E-value: 2.13e-39
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 332994252   2 SEKAKRAIGLKYDGGdKKTAPKVVAKGYGDLAEAIIAMAEESGILIHEDPYLSEVLSTLDLGQDIPESLYFVIAELLAYS 81
Cdd:COG2257    5 KKKRKKAVALKYDGE-KDNAPKVVAKGKGELAEKIIELAKEHGVPVHEDPELVELLSQLDLGDEIPPELYQAVAEILAFI 83

                         90
                 ....*....|..
gi 332994252  82 YVLQGKIPPGWE 93
Cdd:COG2257   84 YRLDGKAPEGKP 95
FlhB COG1377
Flagellar biosynthesis protein FlhB [Cell motility];
8-86 2.27e-18

Flagellar biosynthesis protein FlhB [Cell motility];


Pssm-ID: 440987  Cd Length: 352  Bit Score: 77.85  E-value: 2.27e-18
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 332994252   8 AIGLKYDGGdKKTAPKVVAKGYGDLAEAIIAMAEESGILIHEDPYLSEVL-STLDLGQDIPESLYFVIAELLAYSYVLQG 86
Cdd:COG1377  274 AVALKYDPG-KMGAPVVVAKGADEVALRIREIAREHGVPIVENPPLARALyATVEVGQEIPEELYQAVAEVLAYVYQLKR 352
Bac_export_2 pfam01312
FlhB HrpN YscU SpaS Family; This family includes the following members: FlhB, HrpN, YscU, SpaS, ...
 8-80 8.59e-18

FlhB HrpN YscU SpaS Family; This family includes the following members: FlhB, HrpN, YscU, SpaS, HrcU SsaU and YopU. All of these proteins export peptides using the type III secretion system. The peptides exported are quite diverse.


Pssm-ID: 460157  Cd Length: 338  Bit Score: 75.94  E-value: 8.59e-18
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 332994252    8 AIGLKYDGGdKKTAPKVVAKGYGDLAEAIIAMAEESGILIHEDPYLSEVL-STLDLGQDIPESLYFVIAELLAY 80
Cdd:pfam01312 265 AVALKYDPG-KMPAPVVVAKGADELALRIREIAREHGVPIVENPPLARALyATVEVGQEIPEELYQAVAEVLAY 337
flhB PRK05702
flagellar type III secretion system protein FlhB;
8-82 2.34e-17

flagellar type III secretion system protein FlhB;


Pssm-ID: 235569  Cd Length: 359  Bit Score: 75.19  E-value: 2.34e-17
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 332994252   8 AIGLKYDGGdKKTAPKVVAKGYGDLAEAIIAMAEESGILIHEDPYLSEVL-STLDLGQDIPESLYFVIAELLAYSY 82
Cdd:PRK05702 274 AVALKYDRG-KMAAPVVVAKGVDEVALKIREIAREHNVPIVENPPLARALyATVEIGQEIPEELYKAVAEVLAYVY 348
flhB PRK12468
flagellar biosynthesis protein FlhB; Reviewed
 8-89 2.55e-10

flagellar biosynthesis protein FlhB; Reviewed


Pssm-ID: 171522  Cd Length: 386  Bit Score: 55.42  E-value: 2.55e-10
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 332994252   8 AIGLKYDGgDKKTAPKVVAKGYGDLAEAIIAMAEESGILIHEDPYLSEVL-STLDLGQDIPESLYFVIAELLAYSYVLQ- 85
Cdd:PRK12468 274 AVALQYNE-SKMSAPKVLAKGAGAVALRIRELGAEHRIPLLEAPPLARALfRHSEVGQHIPATLYAAVAEVLAWVYQLKr 352


                 ....*....
gi 332994252  86 -----GKIP 89
Cdd:PRK12468 353 wkregGLIP 361
PRK12772 PRK12772
fused FliR family export protein/FlhB family type III secretion system protein;
8-87 5.70e-09

fused FliR family export protein/FlhB family type III secretion system protein;


Pssm-ID: 237199 [Multi-domain]  Cd Length: 609  Bit Score: 51.60  E-value: 5.70e-09
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 332994252   8 AIGLKYDGGDKKtAPKVVAKGYGDLAEAIIAMAEESGILIHEDPYLSEVL-STLDLGQDIPESLYFVIAELLAYSYVLQG 86
Cdd:PRK12772 530 AVALKYEEGKDE-APKVVAKGADYVALKIKEIAKENDVPIIENKPLARLIyKKVEIDQEIPQDMYQAVAEILAIVYKLKK 608


                 .
gi 332994252  87 K 87
Cdd:PRK12772 609 K 609
flhB PRK13109
flagellar biosynthesis protein FlhB; Reviewed
 8-89 2.28e-06

flagellar biosynthesis protein FlhB; Reviewed


Pssm-ID: 183864  Cd Length: 358  Bit Score: 44.02  E-value: 2.28e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 332994252   8 AIGLKYDGGdKKTAPKVVAKGYGDLAEAIIAMAEESGILIHEDPYLSEVL-STLDLGQDIPESLYFVIAELLAYSYVLQG 86
Cdd:PRK13109 276 AIALRYERS-ENPAPLVVAKGQDLIALKIREIAEENGIPVIEDKPLARSLyDAVQVDQVIPAEFYRPVAQILYFLFSRAR 354


                 ...
gi 332994252  87 KIP 89
Cdd:PRK13109 355 KAA 357
PRK12721 PRK12721
EscU/YscU/HrcU family type III secretion system export apparatus switch protein;
8-78 5.63e-06

EscU/YscU/HrcU family type III secretion system export apparatus switch protein;


Pssm-ID: 183700  Cd Length: 349  Bit Score: 43.12  E-value: 5.63e-06
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 332994252   8 AIGLKYDGGDKKTaPKVVAKGYGDLAEAIIAMAEESGILIHEDPYLSEVL-STLDLGQDIPESLYFVIAELL 78
Cdd:PRK12721 267 AVCLYYHPGETPL-PRVLEKGKDAQALHIVKLAERNGIPVVENIPLARALfKEVECGDYIPETLFEPVAALL 337
PRK06298 PRK06298
type III secretion system protein; Validated
 17-91 8.07e-05

type III secretion system protein; Validated


Pssm-ID: 180519  Cd Length: 356  Bit Score: 39.83  E-value: 8.07e-05
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 332994252  17 DKKTAPKVVAKGYGDLAEAIIAMAEESGILIHEDPYLSEVLstLDLGQD---IPESLYFVIAELLAYSYVLQGKIPPG 91
Cdd:PRK06298 276 EKYKAPWIIAMGINLRAKRIIAEAEKYGVPIMRNVPLAHQL--LDEGKElkfIPESTYEAIGEILLYITSLNAQNPNN 351
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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