NCBI Home Page NCBI Site Search page NCBI Guide that lists and describes the NCBI resources
Conserved domains on  [gi|332701163|gb|ACT78868|]
View 

cytochrome oxidase subunit I, partial [uncultured organism]

Protein Classification

heme-copper oxidase family protein( domain architecture ID 14)

heme-copper oxidase family protein may catalyze the transfer of electrons from an electron donor onto molecular oxygen

Graphical summary

 Zoom to residue level

show extra options »

Show site features     Horizontal zoom: ×

List of domain hits

 Name Accession Description Interval E-value
Heme_Cu_Oxidase_I super family cl00275
Heme-copper oxidase subunit I. Heme-copper oxidases are transmembrane protein complexes in ...
 1-177 7.90e-91

Heme-copper oxidase subunit I. Heme-copper oxidases are transmembrane protein complexes in the respiratory chains of prokaryotes and mitochondria which catalyze the reduction of O2 and simultaneously pump protons across the membrane. The superfamily is diverse in terms of electron donors, subunit composition, and heme types. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. It has been proposed that Archaea acquired heme-copper oxidases through gene transfer from Gram-positive bacteria. Membership in the superfamily is defined by subunit I, which contains a heme-copper binuclear center (the active site where O2 is reduced to water) formed by a high-spin heme and a copper ion. It also contains a low-spin heme, believed to participate in the transfer of electrons to the binuclear center. Only subunit I is common to the entire superfamily. For every reduction of an O2 molecule, eight protons are taken from the inside aqueous compartment and four electrons are taken from the electron donor on the opposite side of the membrane. The four electrons and four of the protons are used in the reduction of O2; the four remaining protons are pumped across the membrane. This charge separation of four charges contributes to the electrochemical gradient used for ATP synthesis. Two proton channels, the D-pathway and K-pathway, leading to the binuclear center have been identified in subunit I of cytochrome c oxidase (CcO) and ubiquinol oxidase. A well-defined pathway for the transfer of pumped protons beyond the binuclear center has not been identified. Electron transfer occurs in two segments: from the electron donor to the low-spin heme, and from the low-spin heme to the binuclear center. The first segment can be a multi-step process and varies among the different families, while the second segment, a direct transfer, is consistent throughout the superfamily.


The actual alignment was detected with superfamily member cd01663:

Pssm-ID: 469701  Cd Length: 488  Bit Score: 273.20  E-value: 7.90e-91
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 332701163   1 RAELWQPGLQFVDPHFFNQMTTMHALIMVFGAVMPG-FVGFANWMVPLMIGAPDMALPRMNNWSFWILPFAFSILLLSFF 79
Cdd:cd01663   29 RLELSQPGSQLGNDQLYNVIVTAHALIMIFFMVMPAlIGGFGNWLVPLMIGAPDMAFPRLNNLSFWLLPPSLLLLLLSAL 108

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 332701163  80 VPGGApASGWTLYAPLTIQG---GMSVDMGIVAIHMMGVSSIMGAINVIVTVLNMRAPGMTLMKMPMFVWTWLITAFLLI 156
Cdd:cd01663  109 VEGGA-GTGWTVYPPLSSILahsGPSVDLAIFSLHLAGISSILGAINFITTIFNMRAPGMTLEKMPLFVWSVLITAFLLL 187

                        170       180
                 ....*....|....*....|.
gi 332701163 157 AVMPVFAGAVTMLLTDRHFGT 177
Cdd:cd01663  188 LSLPVLAGAITMLLTDRNFNT 208
 
Name Accession Description Interval E-value
Cyt_c_Oxidase_I cd01663
Cytochrome C oxidase subunit I. Cytochrome c oxidase (CcO), the terminal oxidase in the ...
 1-177 7.90e-91

Cytochrome C oxidase subunit I. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Only subunits I and II are essential for function, but subunit III, which is also conserved, may play a role in assembly or oxygen delivery to the active site. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Subunit I contains a heme-copper binuclear center (the active site where O2 is reduced to water) formed by a high-spin heme (heme a3) and a copper ion (CuB). It also contains a low-spin heme (heme a), believed to participate in the transfer of electrons to the binuclear center. For every reduction of an O2 molecule, eight protons are taken from the inside aqueous compartment and four electrons are taken from cytochrome c on the opposite side of the membrane. The four electrons and four of the protons are used in the reduction of O2; the four remaining protons are pumped across the membrane. This charge separation of four charges contributes to the electrochemical gradient used for ATP synthesis. Two proton channels, the D-pathway and K-pathway, leading to the binuclear center have been identified in subunit I. A well-defined pathway for the transfer of pumped protons beyond the binuclear center has not been identified. Electrons are transferred from cytochrome c (the electron donor) to heme a via the CuA binuclear site in subunit II, and directly from heme a to the binuclear center.


Pssm-ID: 238833  Cd Length: 488  Bit Score: 273.20  E-value: 7.90e-91
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 332701163   1 RAELWQPGLQFVDPHFFNQMTTMHALIMVFGAVMPG-FVGFANWMVPLMIGAPDMALPRMNNWSFWILPFAFSILLLSFF 79
Cdd:cd01663   29 RLELSQPGSQLGNDQLYNVIVTAHALIMIFFMVMPAlIGGFGNWLVPLMIGAPDMAFPRLNNLSFWLLPPSLLLLLLSAL 108

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 332701163  80 VPGGApASGWTLYAPLTIQG---GMSVDMGIVAIHMMGVSSIMGAINVIVTVLNMRAPGMTLMKMPMFVWTWLITAFLLI 156
Cdd:cd01663  109 VEGGA-GTGWTVYPPLSSILahsGPSVDLAIFSLHLAGISSILGAINFITTIFNMRAPGMTLEKMPLFVWSVLITAFLLL 187

                        170       180
                 ....*....|....*....|.
gi 332701163 157 AVMPVFAGAVTMLLTDRHFGT 177
Cdd:cd01663  188 LSLPVLAGAITMLLTDRNFNT 208
COX1 MTH00223
cytochrome c oxidase subunit I; Provisional
 1-177 2.08e-66

cytochrome c oxidase subunit I; Provisional


Pssm-ID: 177260  Cd Length: 512  Bit Score: 210.99  E-value: 2.08e-66
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 332701163   1 RAELWQPGLQFVDPHFFNQMTTMHALIMVFGAVMPGFVG-FANWMVPLMIGAPDMALPRMNNWSFWILPFAFSILLLSFF 79
Cdd:MTH00223  35 RAELGQPGALLGDDQLYNVIVTAHAFVMIFFLVMPMMIGgFGNWLVPLMLGAPDMAFPRLNNMSFWLLPPSLYLLLSSSA 114

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 332701163  80 VPGGApASGWTLYAPLT---IQGGMSVDMGIVAIHMMGVSSIMGAINVIVTVLNMRAPGMTLMKMPMFVWTWLITAFLLI 156
Cdd:MTH00223 115 VESGV-GTGWTVYPPLSsnlAHAGPSVDLAIFSLHLAGVSSILGAINFITTIINMRSPGMQLERLPLFVWSVKVTAFLLL 193

                        170       180
                 ....*....|....*....|.
gi 332701163 157 AVMPVFAGAVTMLLTDRHFGT 177
Cdd:MTH00223 194 LSLPVLAGAITMLLTDRNFNT 214
CyoB COG0843
Heme/copper-type cytochrome/quinol oxidase, subunit 1 [Energy production and conversion];
1-177 2.54e-66

Heme/copper-type cytochrome/quinol oxidase, subunit 1 [Energy production and conversion];


Pssm-ID: 440605  Cd Length: 535  Bit Score: 211.14  E-value: 2.54e-66
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 332701163   1 RAELWQPGLQFVDPHFFNQMTTMHALIMVFGAVMPGFVGFANWMVPLMIGAPDMALPRMNNWSFWILPFAFSILLLSFFV 80
Cdd:COG0843   41 RLQLAGPGLGLLSPETYNQLFTMHGTIMIFFFATPFLAGFGNYLVPLQIGARDMAFPRLNALSFWLYLFGGLLLLISLFV 120

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 332701163  81 pGGAPASGWTLYAPLTIQ---GGMSVDMGIVAIHMMGVSSIMGAINVIVTVLNMRAPGMTLMKMPMFVWTWLITAFLLIA 157
Cdd:COG0843  121 -GGAADVGWTFYPPLSGLeasPGVGVDLWLLGLALFGVGSILGGVNFIVTILKMRAPGMTLMRMPLFTWAALVTSILILL 199

                        170       180
                 ....*....|....*....|
gi 332701163 158 VMPVFAGAVTMLLTDRHFGT 177
Cdd:COG0843  200 AFPVLAAALLLLLLDRSLGT 219
COX1 pfam00115
Cytochrome C and Quinol oxidase polypeptide I; Cytochrome c oxidase (E.C:7.1.1.9) is a key ...
 1-177 7.50e-40

Cytochrome C and Quinol oxidase polypeptide I; Cytochrome c oxidase (E.C:7.1.1.9) is a key enzyme in aerobic metabolism. Proton pumping haem-copper oxidases represent the terminal, energy-transfer enzymes of respiratory chains in prokaryotes and eukaryotes. The CuB-haem a3 (or haem o) binuclear centre, associated with the largest subunit I of cytochrome c and ubiquinol oxidases (E.C:1.10.3.11), is directly involved in the coupling between dioxygen reduction and proton pumping. Some terminal oxidases generate a transmembrane proton gradient across the plasma membrane (prokaryotes) or the mitochondrial inner membrane (eukaryotes). The enzyme complex consists of 3-4 subunits (prokaryotes) up to 13 polypeptides (mammals) of which only the catalytic subunit (equivalent to mammalian subunit I (COXI) is found in all haem-copper respiratory oxidases. The presence of a bimetallic centre (formed by a high-spin haem and copper B) as well as a low-spin haem, both ligated to six conserved histidine residues near the outer side of four transmembrane spans within CO I is common to all family members.


Pssm-ID: 459678  Cd Length: 432  Bit Score: 139.63  E-value: 7.50e-40
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 332701163    1 RAELWQPGLQFVDPHFFNQMTTMHALIMVFGAVMPGFVGFANWMVPLMIGAPDMALPRMNNWSFWILPFAFSILLLSFfv 80
Cdd:pfam00115  25 RLQLAFPGLNFLSPLTYNQLRTLHGNLMIFWFATPFLFGFGNYLVPLMIGARDMAFPRLNALSFWLVVLGAVLLLASF-- 102

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 332701163   81 pgGAPASGWTLYAPLtiqggMSVDMGIVAIHMMGVSSIMGAINVIVTVLNMRAPGMTlMKMPMFVWTWLITAFLLIAVMP 160
Cdd:pfam00115 103 --GGATTGWTEYPPL-----VGVDLWYIGLLLAGVSSLLGAINFIVTILKRRAPGMT-LRMPLFVWAILATAILILLAFP 174

                         170
                  ....*....|....*..
gi 332701163  161 VFAGAVTMLLTDRHFGT 177
Cdd:pfam00115 175 VLAAALLLLLLDRSLGA 191
 
Name Accession Description Interval E-value
Cyt_c_Oxidase_I cd01663
Cytochrome C oxidase subunit I. Cytochrome c oxidase (CcO), the terminal oxidase in the ...
 1-177 7.90e-91

Cytochrome C oxidase subunit I. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Only subunits I and II are essential for function, but subunit III, which is also conserved, may play a role in assembly or oxygen delivery to the active site. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Subunit I contains a heme-copper binuclear center (the active site where O2 is reduced to water) formed by a high-spin heme (heme a3) and a copper ion (CuB). It also contains a low-spin heme (heme a), believed to participate in the transfer of electrons to the binuclear center. For every reduction of an O2 molecule, eight protons are taken from the inside aqueous compartment and four electrons are taken from cytochrome c on the opposite side of the membrane. The four electrons and four of the protons are used in the reduction of O2; the four remaining protons are pumped across the membrane. This charge separation of four charges contributes to the electrochemical gradient used for ATP synthesis. Two proton channels, the D-pathway and K-pathway, leading to the binuclear center have been identified in subunit I. A well-defined pathway for the transfer of pumped protons beyond the binuclear center has not been identified. Electrons are transferred from cytochrome c (the electron donor) to heme a via the CuA binuclear site in subunit II, and directly from heme a to the binuclear center.


Pssm-ID: 238833  Cd Length: 488  Bit Score: 273.20  E-value: 7.90e-91
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 332701163   1 RAELWQPGLQFVDPHFFNQMTTMHALIMVFGAVMPG-FVGFANWMVPLMIGAPDMALPRMNNWSFWILPFAFSILLLSFF 79
Cdd:cd01663   29 RLELSQPGSQLGNDQLYNVIVTAHALIMIFFMVMPAlIGGFGNWLVPLMIGAPDMAFPRLNNLSFWLLPPSLLLLLLSAL 108

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 332701163  80 VPGGApASGWTLYAPLTIQG---GMSVDMGIVAIHMMGVSSIMGAINVIVTVLNMRAPGMTLMKMPMFVWTWLITAFLLI 156
Cdd:cd01663  109 VEGGA-GTGWTVYPPLSSILahsGPSVDLAIFSLHLAGISSILGAINFITTIFNMRAPGMTLEKMPLFVWSVLITAFLLL 187

                        170       180
                 ....*....|....*....|.
gi 332701163 157 AVMPVFAGAVTMLLTDRHFGT 177
Cdd:cd01663  188 LSLPVLAGAITMLLTDRNFNT 208
COX1 MTH00223
cytochrome c oxidase subunit I; Provisional
 1-177 2.08e-66

cytochrome c oxidase subunit I; Provisional


Pssm-ID: 177260  Cd Length: 512  Bit Score: 210.99  E-value: 2.08e-66
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 332701163   1 RAELWQPGLQFVDPHFFNQMTTMHALIMVFGAVMPGFVG-FANWMVPLMIGAPDMALPRMNNWSFWILPFAFSILLLSFF 79
Cdd:MTH00223  35 RAELGQPGALLGDDQLYNVIVTAHAFVMIFFLVMPMMIGgFGNWLVPLMLGAPDMAFPRLNNMSFWLLPPSLYLLLSSSA 114

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 332701163  80 VPGGApASGWTLYAPLT---IQGGMSVDMGIVAIHMMGVSSIMGAINVIVTVLNMRAPGMTLMKMPMFVWTWLITAFLLI 156
Cdd:MTH00223 115 VESGV-GTGWTVYPPLSsnlAHAGPSVDLAIFSLHLAGVSSILGAINFITTIINMRSPGMQLERLPLFVWSVKVTAFLLL 193

                        170       180
                 ....*....|....*....|.
gi 332701163 157 AVMPVFAGAVTMLLTDRHFGT 177
Cdd:MTH00223 194 LSLPVLAGAITMLLTDRNFNT 214
CyoB COG0843
Heme/copper-type cytochrome/quinol oxidase, subunit 1 [Energy production and conversion];
1-177 2.54e-66

Heme/copper-type cytochrome/quinol oxidase, subunit 1 [Energy production and conversion];


Pssm-ID: 440605  Cd Length: 535  Bit Score: 211.14  E-value: 2.54e-66
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 332701163   1 RAELWQPGLQFVDPHFFNQMTTMHALIMVFGAVMPGFVGFANWMVPLMIGAPDMALPRMNNWSFWILPFAFSILLLSFFV 80
Cdd:COG0843   41 RLQLAGPGLGLLSPETYNQLFTMHGTIMIFFFATPFLAGFGNYLVPLQIGARDMAFPRLNALSFWLYLFGGLLLLISLFV 120

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 332701163  81 pGGAPASGWTLYAPLTIQ---GGMSVDMGIVAIHMMGVSSIMGAINVIVTVLNMRAPGMTLMKMPMFVWTWLITAFLLIA 157
Cdd:COG0843  121 -GGAADVGWTFYPPLSGLeasPGVGVDLWLLGLALFGVGSILGGVNFIVTILKMRAPGMTLMRMPLFTWAALVTSILILL 199

                        170       180
                 ....*....|....*....|
gi 332701163 158 VMPVFAGAVTMLLTDRHFGT 177
Cdd:COG0843  200 AFPVLAAALLLLLLDRSLGT 219
COX1 MTH00153
cytochrome c oxidase subunit I; Provisional
 1-177 1.67e-65

cytochrome c oxidase subunit I; Provisional


Pssm-ID: 177210  Cd Length: 511  Bit Score: 208.57  E-value: 1.67e-65
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 332701163   1 RAELWQPGLQFVDPHFFNQMTTMHALIMVFGAVMPGFVG-FANWMVPLMIGAPDMALPRMNNWSFWILPFAFSILLLSFF 79
Cdd:MTH00153  36 RAELGQPGSLIGDDQIYNVIVTAHAFIMIFFMVMPIMIGgFGNWLVPLMLGAPDMAFPRMNNMSFWLLPPSLTLLLSSSM 115

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 332701163  80 VPGGApASGWTLYAPLT---IQGGMSVDMGIVAIHMMGVSSIMGAINVIVTVLNMRAPGMTLMKMPMFVWTWLITAFLLI 156
Cdd:MTH00153 116 VESGA-GTGWTVYPPLSsniAHSGASVDLAIFSLHLAGISSILGAINFITTIINMRSKGMTLDRMPLFVWSVLITAILLL 194

                        170       180
                 ....*....|....*....|.
gi 332701163 157 AVMPVFAGAVTMLLTDRHFGT 177
Cdd:MTH00153 195 LSLPVLAGAITMLLTDRNLNT 215
COX1 MTH00167
cytochrome c oxidase subunit I; Provisional
 1-177 6.69e-59

cytochrome c oxidase subunit I; Provisional


Pssm-ID: 177222  Cd Length: 512  Bit Score: 191.43  E-value: 6.69e-59
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 332701163   1 RAELWQPGLQFVDPHFFNQMTTMHALIMVFGAVMPGFVG-FANWMVPLMIGAPDMALPRMNNWSFWILPFAFSILLLSFF 79
Cdd:MTH00167  38 RAELSQPGSLLGDDQIYNVIVTAHAFVMIFFMVMPIMIGgFGNWLVPLMIGAPDMAFPRMNNMSFWLLPPSLLLLLASSG 117

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 332701163  80 VPGGApASGWTLYAPLT---IQGGMSVDMGIVAIHMMGVSSIMGAINVIVTVLNMRAPGMTLMKMPMFVWTWLITAFLLI 156
Cdd:MTH00167 118 VEAGA-GTGWTVYPPLAgnlAHAGASVDLAIFSLHLAGVSSILGSINFITTIINMKPPGITQYQTPLFVWSILVTTILLL 196

                        170       180
                 ....*....|....*....|.
gi 332701163 157 AVMPVFAGAVTMLLTDRHFGT 177
Cdd:MTH00167 197 LSLPVLAAAITMLLTDRNLNT 217
COX1 MTH00079
cytochrome c oxidase subunit I; Provisional
 1-177 2.93e-58

cytochrome c oxidase subunit I; Provisional


Pssm-ID: 177148  Cd Length: 508  Bit Score: 189.51  E-value: 2.93e-58
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 332701163   1 RAELWQPGLQFVDPHFFNQMTTMHALIMVFGAVMPGFVG-FANWMVPLMIGAPDMALPRMNNWSFWILPFAFSILLLSFF 79
Cdd:MTH00079  39 RLELSKPGLLLGNGQLYNSVITAHAILMIFFMVMPSMIGgFGNWMLPLMLGAPDMSFPRLNNLSFWLLPTSLFLILDSCF 118

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 332701163  80 VPGGaPASGWTLYAPLTIQG--GMSVDMGIVAIHMMGVSSIMGAINVIVTVLNMRAPGMTLMKMPMFVWTWLITAFLLIA 157
Cdd:MTH00079 119 VDMG-PGTSWTVYPPLSTLGhpGSSVDLAIFSLHCAGISSILGGINFMVTTKNLRSSSISLEHMSLFVWTVFVTVFLLVL 197

                        170       180
                 ....*....|....*....|
gi 332701163 158 VMPVFAGAVTMLLTDRHFGT 177
Cdd:MTH00079 198 SLPVLAGAITMLLTDRNLNT 217
COX1 MTH00116
cytochrome c oxidase subunit I; Provisional
 1-177 4.45e-56

cytochrome c oxidase subunit I; Provisional


Pssm-ID: 177177  Cd Length: 515  Bit Score: 184.14  E-value: 4.45e-56
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 332701163   1 RAELWQPGLQFVDPHFFNQMTTMHALIMVFGAVMPGFVG-FANWMVPLMIGAPDMALPRMNNWSFWILPFAFSILLLSFF 79
Cdd:MTH00116  38 RAELGQPGTLLGDDQIYNVIVTAHAFVMIFFMVMPIMIGgFGNWLVPLMIGAPDMAFPRMNNMSFWLLPPSFLLLLASST 117

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 332701163  80 VPGGApASGWTLYAPLT---IQGGMSVDMGIVAIHMMGVSSIMGAINVIVTVLNMRAPGMTLMKMPMFVWTWLITAFLLI 156
Cdd:MTH00116 118 VEAGA-GTGWTVYPPLAgnlAHAGASVDLAIFSLHLAGVSSILGAINFITTCINMKPPAMSQYQTPLFVWSVLITAVLLL 196

                        170       180
                 ....*....|....*....|.
gi 332701163 157 AVMPVFAGAVTMLLTDRHFGT 177
Cdd:MTH00116 197 LSLPVLAAGITMLLTDRNLNT 217
Heme_Cu_Oxidase_I cd00919
Heme-copper oxidase subunit I. Heme-copper oxidases are transmembrane protein complexes in ...
 1-177 6.84e-56

Heme-copper oxidase subunit I. Heme-copper oxidases are transmembrane protein complexes in the respiratory chains of prokaryotes and mitochondria which catalyze the reduction of O2 and simultaneously pump protons across the membrane. The superfamily is diverse in terms of electron donors, subunit composition, and heme types. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. It has been proposed that Archaea acquired heme-copper oxidases through gene transfer from Gram-positive bacteria. Membership in the superfamily is defined by subunit I, which contains a heme-copper binuclear center (the active site where O2 is reduced to water) formed by a high-spin heme and a copper ion. It also contains a low-spin heme, believed to participate in the transfer of electrons to the binuclear center. Only subunit I is common to the entire superfamily. For every reduction of an O2 molecule, eight protons are taken from the inside aqueous compartment and four electrons are taken from the electron donor on the opposite side of the membrane. The four electrons and four of the protons are used in the reduction of O2; the four remaining protons are pumped across the membrane. This charge separation of four charges contributes to the electrochemical gradient used for ATP synthesis. Two proton channels, the D-pathway and K-pathway, leading to the binuclear center have been identified in subunit I of cytochrome c oxidase (CcO) and ubiquinol oxidase. A well-defined pathway for the transfer of pumped protons beyond the binuclear center has not been identified. Electron transfer occurs in two segments: from the electron donor to the low-spin heme, and from the low-spin heme to the binuclear center. The first segment can be a multi-step process and varies among the different families, while the second segment, a direct transfer, is consistent throughout the superfamily.


Pssm-ID: 238461  Cd Length: 463  Bit Score: 182.35  E-value: 6.84e-56
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 332701163   1 RAELWQPGLQFVDPHFFNQMTTMHALIMVFGAVMPGFVGFANWMVPLMIGAPDMALPRMNNWSFWILPFAFSILLLSFFV 80
Cdd:cd00919   27 RLELATPGSLFLDPQLYNQLVTAHGVIMIFFFVMPAIFGGFGNLLPPLIGARDLAFPRLNNLSFWLFPPGLLLLLSSVLV 106

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 332701163  81 PGGApASGWTLYAPLTIQ---GGMSVDMGIVAIHMMGVSSIMGAINVIVTVLNMRAPGMTLMKMPMFVWTWLITAFLLIA 157
Cdd:cd00919  107 GGGA-GTGWTFYPPLSTLsysSGVGVDLAILGLHLAGVSSILGAINFITTILNMRAPGMTLDKMPLFVWSVLVTAILLLL 185

                        170       180
                 ....*....|....*....|
gi 332701163 158 VMPVFAGAVTMLLTDRHFGT 177
Cdd:cd00919  186 ALPVLAAALVMLLLDRNFGT 205
COX1 MTH00142
cytochrome c oxidase subunit I; Provisional
 1-177 1.55e-55

cytochrome c oxidase subunit I; Provisional


Pssm-ID: 214431  Cd Length: 511  Bit Score: 182.62  E-value: 1.55e-55
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 332701163   1 RAELWQPGLQFVDPHFFNQMTTMHALIMVFGAVMPGFVG-FANWMVPLMIGAPDMALPRMNNWSFWILPFAFSILLLSFF 79
Cdd:MTH00142  36 RAELGQPGSLLGDDQLYNVIVTAHAFVMIFFMVMPVMIGgFGNWLVPLMLGAPDMAFPRMNNMSFWLLPPALLLLLSSAA 115

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 332701163  80 VPGGApASGWTLYAPLT---IQGGMSVDMGIVAIHMMGVSSIMGAINVIVTVLNMRAPGMTLMKMPMFVWTWLITAFLLI 156
Cdd:MTH00142 116 VESGA-GTGWTVYPPLSsnlAHSGGSVDLAIFSLHLAGVSSILGAINFITTVINMRAGGMKFERVPLFVWSVKITAILLL 194

                        170       180
                 ....*....|....*....|.
gi 332701163 157 AVMPVFAGAVTMLLTDRHFGT 177
Cdd:MTH00142 195 LSLPVLAGAITMLLTDRNFNT 215
COX1 MTH00182
cytochrome c oxidase subunit I; Provisional
 1-177 8.28e-55

cytochrome c oxidase subunit I; Provisional


Pssm-ID: 214451  Cd Length: 525  Bit Score: 180.79  E-value: 8.28e-55
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 332701163   1 RAELWQPGLQFVDPHFFNQMTTMHALIMVFGAVMPGFVG-FANWMVPLMIGAPDMALPRMNNWSFWILPFAFSILLLSFF 79
Cdd:MTH00182  40 RLELSAPGAMLGDDHLYNVIVTAHAFIMIFFLVMPVMIGgFGNWLVPLYIGAPDMAFPRLNNISFWLLPPALILLLGSAF 119

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 332701163  80 VPGGApASGWTLYAPLT---IQGGMSVDMGIVAIHMMGVSSIMGAINVIVTVLNMRAPGMTLMKMPMFVWTWLITAFLLI 156
Cdd:MTH00182 120 VEQGA-GTGWTVYPPLSsiqAHSGGAVDMAIFSLHLAGVSSILGAINFITTIFNMRAPGVTFNRLPLFVWSILITAFLLL 198

                        170       180
                 ....*....|....*....|.
gi 332701163 157 AVMPVFAGAVTMLLTDRHFGT 177
Cdd:MTH00182 199 LSLPVLAGAITMLLTDRNFNT 219
COX1 MTH00184
cytochrome c oxidase subunit I; Provisional
 1-177 2.98e-54

cytochrome c oxidase subunit I; Provisional


Pssm-ID: 177235  Cd Length: 519  Bit Score: 179.25  E-value: 2.98e-54
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 332701163   1 RAELWQPGLQFVDPHFFNQMTTMHALIMVFGAVMPGFVG-FANWMVPLMIGAPDMALPRMNNWSFWILPFAFSILLLSFF 79
Cdd:MTH00184  40 RLELSAPGSMLGDDHLYNVIVTAHAFVMIFFLVMPVMIGgFGNWFVPLYIGAPDMAFPRLNNISFWLLPPALTLLLGSAF 119

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 332701163  80 VPGGApASGWTLYAPLT-IQG--GMSVDMGIVAIHMMGVSSIMGAINVIVTVLNMRAPGMTLMKMPMFVWTWLITAFLLI 156
Cdd:MTH00184 120 VEQGA-GTGWTVYPPLSsIQAhsGGSVDMAIFSLHLAGISSILGAMNFITTIFNMRAPGITMDRMPLFVWSILVTTFLLL 198

                        170       180
                 ....*....|....*....|.
gi 332701163 157 AVMPVFAGAVTMLLTDRHFGT 177
Cdd:MTH00184 199 LSLPVLAGAITMLLTDRNFNT 219
Ubiquinol_Oxidase_I cd01662
Ubiquinol oxidase subunit I. Ubiquinol oxidase, the terminal oxidase in the respiratory ...
 1-177 1.80e-53

Ubiquinol oxidase subunit I. Ubiquinol oxidase, the terminal oxidase in the respiratory chains of aerobic bacteria, is a multi-chain transmembrane protein located in the cell membrane. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits in ubiquinol oxidase varies from two to five. Subunit I contains a heme-copper binuclear center (the active site where O2 is reduced to water) formed by a high-spin heme and a copper ion. It also contains a low-spin heme, believed to participate in the transfer of electrons from ubiquinol to the binuclear center. For every reduction of an O2 molecule, eight protons are taken from the inside aqueous compartment and four electrons are taken from ubiquinol on the opposite side of the membrane. The four electrons and four of the protons are used in the reduction of O2; the four remaining protons are pumped across the membrane. This charge separation of four charges contributes to the electrochemical gradient used for ATP synthesis. Two proton channels, the D-pathway and K-pathway, leading to the binuclear center have been identified in subunit I. It is generally believed that the channels contain water molecules that act as 'proton wires' to transfer the protons. A well-defined pathway for the transfer of pumped protons beyond the binuclear center has not been identified. Electrons are believed to be transferred directly from ubiquinol (the electron donor) to the low-spin heme, and directly from the low-spin heme to the binuclear center.


Pssm-ID: 238832  Cd Length: 501  Bit Score: 177.00  E-value: 1.80e-53
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 332701163   1 RAELWQPGLQFVDPHFFNQMTTMHALIMVFGAVMPGFVGFANWMVPLMIGAPDMALPRMNNWSFWILPFAFSILLLSFFV 80
Cdd:cd01662   33 RTQLALPGNDFLSPEHYNQIFTMHGTIMIFLFAMPLVFGLMNYLVPLQIGARDVAFPRLNALSFWLFLFGGLLLNASLLI 112

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 332701163  81 pGGAPASGWTLYAPLTIQG---GMSVDMGIVAIHMMGVSSIMGAINVIVTVLNMRAPGMTLMKMPMFVWTWLITAFLLIA 157
Cdd:cd01662  113 -GGFPDAGWFAYPPLSGLEyspGVGVDYWILGLQFSGIGTLLGAINFIVTILKMRAPGMTLMRMPIFTWTTLVTSILILF 191

                        170       180
                 ....*....|....*....|
gi 332701163 158 VMPVFAGAVTMLLTDRHFGT 177
Cdd:cd01662  192 AFPVLTAALALLELDRYFGT 211
COX1 MTH00037
cytochrome c oxidase subunit I; Provisional
 1-177 4.50e-53

cytochrome c oxidase subunit I; Provisional


Pssm-ID: 177112  Cd Length: 517  Bit Score: 176.17  E-value: 4.50e-53
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 332701163   1 RAELWQPGLQFVDPHFFNQMTTMHALIMVFGAVMPGFVG-FANWMVPLMIGAPDMALPRMNNWSFWILPFAFSILLLSFF 79
Cdd:MTH00037  38 RTELAQPGSLLQDDQIYNVIVTAHALVMIFFMVMPIMIGgFGNWLIPLMIGAPDMAFPRMNNMSFWLIPPSFLLLLASAG 117

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 332701163  80 VPGGApASGWTLYAPL---TIQGGMSVDMGIVAIHMMGVSSIMGAINVIVTVLNMRAPGMTLMKMPMFVWTWLITAFLLI 156
Cdd:MTH00037 118 VESGA-GTGWTIYPPLssnIAHAGGSVDLAIFSLHLAGASSILASINFITTIINMRTPGMTFDRLPLFVWSVFITAFLLL 196

                        170       180
                 ....*....|....*....|.
gi 332701163 157 AVMPVFAGAVTMLLTDRHFGT 177
Cdd:MTH00037 197 LSLPVLAGAITMLLTDRNINT 217
COX1 MTH00103
cytochrome c oxidase subunit I; Validated
 1-177 7.32e-51

cytochrome c oxidase subunit I; Validated


Pssm-ID: 177165  Cd Length: 513  Bit Score: 170.45  E-value: 7.32e-51
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 332701163   1 RAELWQPGLQFVDPHFFNQMTTMHALIMVFGAVMPGFVG-FANWMVPLMIGAPDMALPRMNNWSFWILPFAFSILLLSFF 79
Cdd:MTH00103  38 RAELGQPGTLLGDDQIYNVIVTAHAFVMIFFMVMPIMIGgFGNWLVPLMIGAPDMAFPRMNNMSFWLLPPSFLLLLASSM 117

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 332701163  80 VPGGApASGWTLYAPLT---IQGGMSVDMGIVAIHMMGVSSIMGAINVIVTVLNMRAPGMTLMKMPMFVWTWLITAFLLI 156
Cdd:MTH00103 118 VEAGA-GTGWTVYPPLAgnlAHAGASVDLTIFSLHLAGVSSILGAINFITTIINMKPPAMSQYQTPLFVWSVLITAVLLL 196

                        170       180
                 ....*....|....*....|.
gi 332701163 157 AVMPVFAGAVTMLLTDRHFGT 177
Cdd:MTH00103 197 LSLPVLAAGITMLLTDRNLNT 217
COX1 MTH00077
cytochrome c oxidase subunit I; Provisional
 1-177 1.37e-50

cytochrome c oxidase subunit I; Provisional


Pssm-ID: 214419  Cd Length: 514  Bit Score: 169.74  E-value: 1.37e-50
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 332701163   1 RAELWQPGLQFVDPHFFNQMTTMHALIMVFGAVMPGFVG-FANWMVPLMIGAPDMALPRMNNWSFWILPFAFSILLLSFF 79
Cdd:MTH00077  38 RAELSQPGTLLGDDQIYNVIVTAHAFVMIFFMVMPIMIGgFGNWLVPLMIGAPDMAFPRMNNMSFWLLPPSFLLLLASSG 117

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 332701163  80 VPGGApASGWTLYAPLT---IQGGMSVDMGIVAIHMMGVSSIMGAINVIVTVLNMRAPGMTLMKMPMFVWTWLITAFLLI 156
Cdd:MTH00077 118 VEAGA-GTGWTVYPPLAgnlAHAGASVDLTIFSLHLAGVSSILGAINFITTSINMKPPSMSQYQTPLFVWSVLITAVLLL 196

                        170       180
                 ....*....|....*....|.
gi 332701163 157 AVMPVFAGAVTMLLTDRHFGT 177
Cdd:MTH00077 197 LSLPVLAAGITMLLTDRNLNT 217
COX1 MTH00183
cytochrome c oxidase subunit I; Provisional
 1-177 1.70e-50

cytochrome c oxidase subunit I; Provisional


Pssm-ID: 177234  Cd Length: 516  Bit Score: 169.33  E-value: 1.70e-50
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 332701163   1 RAELWQPGLQFVDPHFFNQMTTMHALIMVFGAVMPGFVG-FANWMVPLMIGAPDMALPRMNNWSFWILPFAFSILLLSFF 79
Cdd:MTH00183  38 RAELSQPGALLGDDQIYNVIVTAHAFVMIFFMVMPIMIGgFGNWLIPLMIGAPDMAFPRMNNMSFWLLPPSFLLLLASSG 117

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 332701163  80 VPGGApASGWTLYAPLT---IQGGMSVDMGIVAIHMMGVSSIMGAINVIVTVLNMRAPGMTLMKMPMFVWTWLITAFLLI 156
Cdd:MTH00183 118 VEAGA-GTGWTVYPPLAgnlAHAGASVDLTIFSLHLAGVSSILGAINFITTIINMKPPAISQYQTPLFVWAVLITAVLLL 196

                        170       180
                 ....*....|....*....|.
gi 332701163 157 AVMPVFAGAVTMLLTDRHFGT 177
Cdd:MTH00183 197 LSLPVLAAGITMLLTDRNLNT 217
COX1 MTH00007
cytochrome c oxidase subunit I; Validated
 1-177 3.38e-50

cytochrome c oxidase subunit I; Validated


Pssm-ID: 133649  Cd Length: 511  Bit Score: 168.54  E-value: 3.38e-50
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 332701163   1 RAELWQPGLQFVDPHFFNQMTTMHALIMVFGAVMPGFVG-FANWMVPLMIGAPDMALPRMNNWSFWILPFAFSILLLSFF 79
Cdd:MTH00007  35 RIELGQPGAFLGSDQLYNTIVTAHAFLMIFFLVMPVFIGgFGNWLVPLMLGAPDMAFPRLNNMSFWLLPPALILLVSSAA 114

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 332701163  80 VPGGApASGWTLYAPLT---IQGGMSVDMGIVAIHMMGVSSIMGAINVIVTVLNMRAPGMTLMKMPMFVWTWLITAFLLI 156
Cdd:MTH00007 115 VEKGV-GTGWTVYPPLAsnlAHAGPSVDLAIFSLHLAGVSSILGAINFITTVINMRWKGLRLERIPLFVWAVVITVVLLL 193

                        170       180
                 ....*....|....*....|.
gi 332701163 157 AVMPVFAGAVTMLLTDRHFGT 177
Cdd:MTH00007 194 LSLPVLAGAITMLLTDRNLNT 214
COX1 MTH00026
cytochrome c oxidase subunit I; Provisional
 1-177 6.34e-49

cytochrome c oxidase subunit I; Provisional


Pssm-ID: 164599  Cd Length: 534  Bit Score: 165.57  E-value: 6.34e-49
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 332701163   1 RAELWQPGLQFVDPHFFNQMTTMHALIMVFGAVMPGFVG-FANWMVPLMIGAPDMALPRMNNWSFWILPFAFSILLLSFF 79
Cdd:MTH00026  39 RLELSSPGSMLGDDHLYNVIVTAHAFVMIFFLVMPTMIGgFGNWFVPLMIGAPDMAFPRLNNISFWLLPPALFLLLGSSL 118

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 332701163  80 VPGGApASGWTLYAPLT---IQGGMSVDMGIVAIHMMGVSSIMGAINVIVTVLNMRAPGMTLMKMPMFVWTWLITAFLLI 156
Cdd:MTH00026 119 VEQGA-GTGWTVYPPLAsiqAHSGGSVDMAIFSLHLAGLSSILGAMNFITTVMNMRTPGMTMSRIPLFVWSVFITAILLL 197

                        170       180
                 ....*....|....*....|.
gi 332701163 157 AVMPVFAGAVTMLLTDRHFGT 177
Cdd:MTH00026 198 LSLPVLAGAITMLLTDRNFNT 218
COX1 pfam00115
Cytochrome C and Quinol oxidase polypeptide I; Cytochrome c oxidase (E.C:7.1.1.9) is a key ...
 1-177 7.50e-40

Cytochrome C and Quinol oxidase polypeptide I; Cytochrome c oxidase (E.C:7.1.1.9) is a key enzyme in aerobic metabolism. Proton pumping haem-copper oxidases represent the terminal, energy-transfer enzymes of respiratory chains in prokaryotes and eukaryotes. The CuB-haem a3 (or haem o) binuclear centre, associated with the largest subunit I of cytochrome c and ubiquinol oxidases (E.C:1.10.3.11), is directly involved in the coupling between dioxygen reduction and proton pumping. Some terminal oxidases generate a transmembrane proton gradient across the plasma membrane (prokaryotes) or the mitochondrial inner membrane (eukaryotes). The enzyme complex consists of 3-4 subunits (prokaryotes) up to 13 polypeptides (mammals) of which only the catalytic subunit (equivalent to mammalian subunit I (COXI) is found in all haem-copper respiratory oxidases. The presence of a bimetallic centre (formed by a high-spin haem and copper B) as well as a low-spin haem, both ligated to six conserved histidine residues near the outer side of four transmembrane spans within CO I is common to all family members.


Pssm-ID: 459678  Cd Length: 432  Bit Score: 139.63  E-value: 7.50e-40
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 332701163    1 RAELWQPGLQFVDPHFFNQMTTMHALIMVFGAVMPGFVGFANWMVPLMIGAPDMALPRMNNWSFWILPFAFSILLLSFfv 80
Cdd:pfam00115  25 RLQLAFPGLNFLSPLTYNQLRTLHGNLMIFWFATPFLFGFGNYLVPLMIGARDMAFPRLNALSFWLVVLGAVLLLASF-- 102

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 332701163   81 pgGAPASGWTLYAPLtiqggMSVDMGIVAIHMMGVSSIMGAINVIVTVLNMRAPGMTlMKMPMFVWTWLITAFLLIAVMP 160
Cdd:pfam00115 103 --GGATTGWTEYPPL-----VGVDLWYIGLLLAGVSSLLGAINFIVTILKRRAPGMT-LRMPLFVWAILATAILILLAFP 174

                         170
                  ....*....|....*..
gi 332701163  161 VFAGAVTMLLTDRHFGT 177
Cdd:pfam00115 175 VLAAALLLLLLDRSLGA 191
PRK15017 PRK15017
cytochrome o ubiquinol oxidase subunit I; Provisional
 11-177 1.56e-31

cytochrome o ubiquinol oxidase subunit I; Provisional


Pssm-ID: 184978  Cd Length: 663  Bit Score: 119.27  E-value: 1.56e-31
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 332701163  11 FVDPHFFNQMTTMHALIMVFGAVMPGFVGFANWMVPLMIGAPDMALPRMNNWSFWILPFAFSILLLSFFVpGGAPASGWT 90
Cdd:PRK15017  93 FLPPHHYDQIFTAHGVIMIFFVAMPFVIGLMNLVVPLQIGARDVAFPFLNNLSFWFTVVGVILVNVSLGV-GEFAQTGWL 171

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 332701163  91 LYAPLT---IQGGMSVDMGIVAIHMMGVSSIMGAINVIVTVLNMRAPGMTLMKMPMFVWTWLITAFLLIAVMPVFAGAVT 167
Cdd:PRK15017 172 AYPPLSgieYSPGVGVDYWIWSLQLSGIGTTLTGINFFVTILKMRAPGMTMFKMPVFTWASLCANVLIIASFPILTVTVA 251

                        170
                 ....*....|
gi 332701163 168 MLLTDRHFGT 177
Cdd:PRK15017 252 LLTLDRYLGT 261
COX1 MTH00048
cytochrome c oxidase subunit I; Provisional
 9-177 3.51e-29

cytochrome c oxidase subunit I; Provisional


Pssm-ID: 177123  Cd Length: 511  Bit Score: 112.08  E-value: 3.51e-29
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 332701163   9 LQFVDPHF-------FNQMTTMHALIMVFGAVMPGFVG-FANWMVPLMIGAPDMALPRMNNWSFWILPFAFSILLLSFFV 80
Cdd:MTH00048  40 LNFLDPYYnvisldvYNFLITNHGIIMIFFFLMPVLIGgFGNYLLPLLLGLSDLNLPRLNALSAWLLVPSIVFLLLSMCL 119

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 332701163  81 PGGApasGWTLYAPLTIQ---GGMSVDMGIVAIHMMGVSSIMGAINVIVTVLNMRAPGMTLmKMPMFVWTWLITAFLLIA 157
Cdd:MTH00048 120 GAGV---GWTFYPPLSSSlfsSSWGVDFLMFSLHLAGVSSLFGSINFICTIYSAFMTNVFS-RTSIILWSYLFTSILLLL 195

                        170       180
                 ....*....|....*....|
gi 332701163 158 VMPVFAGAVTMLLTDRHFGT 177
Cdd:MTH00048 196 SLPVLAAAITMLLFDRNFGS 215
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
Help | Disclaimer | Write to the Help Desk
NCBI | NLM | NIH