|
Name |
Accession |
Description |
Interval |
E-value |
| CYTB |
MTH00156 |
cytochrome b; Provisional |
1-215 |
1.97e-148 |
|
cytochrome b; Provisional
Pssm-ID: 214440 [Multi-domain] Cd Length: 356 Bit Score: 416.49 E-value: 1.97e-148
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 327239214 1 FLSMHYSANIELAFNSVTHICRDVYYGWLLRTLHANGASFFFICLYLHVGRGMYYNSSNLKFTWTIGVLILFLVMATAFM 80
Cdd:MTH00156 40 FLAMHYTADIELAFSSVIHICRDVNYGWLLRTLHANGASFFFICIYLHIGRGIYYGSYKLKHTWMSGVIILFLVMATAFL 119
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 327239214 81 GYVLPWGQMSFWGATVITNLLSAIPYLGQMLVQWVWGGFAVDNATLTRFYSFHFMLPFIISAFVMIHLLFLHQTGSSNPL 160
Cdd:MTH00156 120 GYVLPWGQMSFWGATVITNLLSAIPYLGTDLVQWIWGGFSVDNATLTRFFTFHFLLPFIILAMVMIHLLFLHQTGSNNPL 199
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*
gi 327239214 161 GMKMNIDKIPFHPFFSLKDTMGFIILLFCLITLTLSYPYYLGDPDNFIPANPLVT 215
Cdd:MTH00156 200 GLNSNIDKIPFHPYFTFKDLVGFIIMLMLLILLTLINPYLLGDPENFIPANPLVT 254
|
|
| QcrB/PetB |
COG1290 |
Cytochrome b subunit of the bc complex [Energy production and conversion]; |
1-215 |
1.54e-75 |
|
Cytochrome b subunit of the bc complex [Energy production and conversion];
Pssm-ID: 440901 [Multi-domain] Cd Length: 393 Bit Score: 232.76 E-value: 1.54e-75
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 327239214 1 FLSMHYSANIELAFNSVTHICRDVYYGWLLRTLHANGASFFFICLYLHVGRGMYYNSsnLK----FTWTIGVLILFLVMA 76
Cdd:COG1290 59 FLTMYYKPSASEAFASVEYIMRDVPGGWLIRYMHHWGASLFFAAVYLHMFRGFFYGA--YKkpreLNWIIGVLLLLLTMA 136
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 327239214 77 TAFMGYVLPWGQMSFWGATVITNLLSAIPYLGQMLVQWVWGGFAVDNATLTRFYSFHFM-LPFIISAFVMIHLLFLHQTG 155
Cdd:COG1290 137 EAFTGYSLPWDQLSYWGARVITGLFGAIPVIGTWLVTWLFGGEFPGDATLNRFFALHVLlLPALLLALVVLHLWLLHRHG 216
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 327239214 156 SSNPLGMKM----NIDKIPFHPFFSLKDTMGFIILLFCLITLTLSYPyyLGDPDNFIPANPLVT 215
Cdd:COG1290 217 HNNPPGPERkkteKVDGVPFHPYYTVKDGFGFFVFLGVFALLAFFFP--INPPPNYGPANPLAT 278
|
|
| Cytochrome_b_N |
cd00284 |
Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit ... |
1-157 |
1.44e-66 |
|
Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit mitochondrial respiratory enzyme. Cytochrome b spans the mitochondrial membrane with 8 transmembrane helices (A-H) in eukaryotes. In plants and cyanobacteria, cytochrome b6 is analogous to eukaryote cytochrome b, containing two chains: helices A-D are encoded by the petB gene and helices E-H are encoded by the petD gene in these organisms. Cytochrome b/b6 contains two bound hemes and two ubiquinol/ubiquinone binding sites. The C-terminal portion of cytochrome b is described in a separate CD.
Pssm-ID: 238176 Cd Length: 200 Bit Score: 203.37 E-value: 1.44e-66
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 327239214 1 FLSMHYSANIELAFNSVTHICRDVYYGWLLRTLHANGASFFFICLYLHVGRGMYYNS--SNLKFTWTIGVLILFLVMATA 78
Cdd:cd00284 42 FLAMHYTPDVTLAFSSVQYIMRDVNFGWLIRSLHANGASMFFLMLYLHIFRGLYYGSykKPRELTWVIGVILLLLTMATA 121
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 327239214 79 FMGYVLPWGQMSFWGATVITNLLSAIPYLGQMLVQWVWGGFAVDNATLTRFYSFHFMLPFIISAFVMIHLLFLHQTGSS 157
Cdd:cd00284 122 FMGYVLPWGQMSYWGATVITNLFSAIPVIGITLVEWLWGGFSVDNATLTRFFALHFLLPFIIAVIVILHLLFLHEQGSS 200
|
|
| Cytochrome_B |
pfam00033 |
Cytochrome b/b6/petB; |
1-155 |
3.14e-61 |
|
Cytochrome b/b6/petB;
Pssm-ID: 306530 Cd Length: 189 Bit Score: 189.52 E-value: 3.14e-61
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 327239214 1 FLSMHYSANIELAFNSVTHICRDVYYGWLLRTLHANGASFFFICLYLHVGRGMYYN--SSNLKFTWTIGVLILFLVMATA 78
Cdd:pfam00033 33 FLAFYYTPDVTLAFLSVQYIMRDVNFGWLIRSVHANGASMFFLMLYLHIFRGLYYGgfSYPRELTWVIGVILLVLTMSTA 112
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 327239214 79 FMGYVLPWGQMSFWGATVITNLLSAIPYLGQMLVQWVWGGFAVDNATLTRFYSFHFMLPFIISAFVMIHLLFLHQTG 155
Cdd:pfam00033 113 FIGYVLPWGQMSYWGATVITNLLSAIPVIGDTLVEWIWGSFSVDQATLTRFFSLHFLLPFILAILMLLHLLFLHETG 189
|
|
|
|
Name |
Accession |
Description |
Interval |
E-value |
| CYTB |
MTH00156 |
cytochrome b; Provisional |
1-215 |
1.97e-148 |
|
cytochrome b; Provisional
Pssm-ID: 214440 [Multi-domain] Cd Length: 356 Bit Score: 416.49 E-value: 1.97e-148
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 327239214 1 FLSMHYSANIELAFNSVTHICRDVYYGWLLRTLHANGASFFFICLYLHVGRGMYYNSSNLKFTWTIGVLILFLVMATAFM 80
Cdd:MTH00156 40 FLAMHYTADIELAFSSVIHICRDVNYGWLLRTLHANGASFFFICIYLHIGRGIYYGSYKLKHTWMSGVIILFLVMATAFL 119
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 327239214 81 GYVLPWGQMSFWGATVITNLLSAIPYLGQMLVQWVWGGFAVDNATLTRFYSFHFMLPFIISAFVMIHLLFLHQTGSSNPL 160
Cdd:MTH00156 120 GYVLPWGQMSFWGATVITNLLSAIPYLGTDLVQWIWGGFSVDNATLTRFFTFHFLLPFIILAMVMIHLLFLHQTGSNNPL 199
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*
gi 327239214 161 GMKMNIDKIPFHPFFSLKDTMGFIILLFCLITLTLSYPYYLGDPDNFIPANPLVT 215
Cdd:MTH00156 200 GLNSNIDKIPFHPYFTFKDLVGFIIMLMLLILLTLINPYLLGDPENFIPANPLVT 254
|
|
| CYTB |
MTH00119 |
cytochrome b; Provisional |
1-215 |
7.26e-131 |
|
cytochrome b; Provisional
Pssm-ID: 214425 [Multi-domain] Cd Length: 380 Bit Score: 373.08 E-value: 7.26e-131
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 327239214 1 FLSMHYSANIELAFNSVTHICRDVYYGWLLRTLHANGASFFFICLYLHVGRGMYYNSSNLKFTWTIGVLILFLVMATAFM 80
Cdd:MTH00119 51 FLAMHYTADISLAFSSVAHICRDVQYGWLIRNLHANGASMFFICIYLHIGRGLYYGSYLYKETWNTGVILLLLLMATAFV 130
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 327239214 81 GYVLPWGQMSFWGATVITNLLSAIPYLGQMLVQWVWGGFAVDNATLTRFYSFHFMLPFIISAFVMIHLLFLHQTGSSNPL 160
Cdd:MTH00119 131 GYVLPWGQMSFWGATVITNLLSAIPYIGQTLVEWIWGGFSVDNPTLTRFFALHFLLPFLIAGLTLIHLLFLHETGSNNPL 210
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*
gi 327239214 161 GMKMNIDKIPFHPFFSLKDTMGFIILLFCLITLTLSYPYYLGDPDNFIPANPLVT 215
Cdd:MTH00119 211 GLNSNTDKIPFHPYFSYKDLLGLTLMLTLLLTLALFSPNLLGDPENFTPANPLVT 265
|
|
| CYTB |
MTH00131 |
cytochrome b; Provisional |
1-215 |
1.52e-129 |
|
cytochrome b; Provisional
Pssm-ID: 177189 [Multi-domain] Cd Length: 380 Bit Score: 369.75 E-value: 1.52e-129
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 327239214 1 FLSMHYSANIELAFNSVTHICRDVYYGWLLRTLHANGASFFFICLYLHVGRGMYYNSSNLKFTWTIGVLILFLVMATAFM 80
Cdd:MTH00131 50 FLAMHYTSDISTAFSSVAHICRDVNYGWLIRNLHANGASFFFICIYLHIGRGLYYGSYLYKETWNIGVVLLLLVMMTAFV 129
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 327239214 81 GYVLPWGQMSFWGATVITNLLSAIPYLGQMLVQWVWGGFAVDNATLTRFYSFHFMLPFIISAFVMIHLLFLHQTGSSNPL 160
Cdd:MTH00131 130 GYVLPWGQMSFWGATVITNLLSAVPYVGNTLVQWIWGGFSVDNATLTRFFAFHFLFPFVIAAATILHLLFLHETGSNNPL 209
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*
gi 327239214 161 GMKMNIDKIPFHPFFSLKDTMGFIILLFCLITLTLSYPYYLGDPDNFIPANPLVT 215
Cdd:MTH00131 210 GLNSDADKISFHPYFSYKDLLGFAILLLALTSLALFSPNLLGDPDNFTPANPLVT 264
|
|
| CYTB |
MTH00191 |
cytochrome b; Provisional |
1-215 |
2.27e-127 |
|
cytochrome b; Provisional
Pssm-ID: 177239 [Multi-domain] Cd Length: 365 Bit Score: 363.47 E-value: 2.27e-127
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 327239214 1 FLSMHYSANIELAFNSVTHICRDVYYGWLLRTLHANGASFFFICLYLHVGRGMYYNSSNLKFTWTIGVLILFLVMATAFM 80
Cdd:MTH00191 47 FLAMHYTADISLAFSSVVHICRDVNYGWLLRNIHANGASFFFICIYLHIGRGLYYGSYLNKETWNVGVILLILSMATAFL 126
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 327239214 81 GYVLPWGQMSFWGATVITNLLSAIPYLGQMLVQWVWGGFAVDNATLTRFYSFHFMLPFIISAFVMIHLLFLHQTGSSNPL 160
Cdd:MTH00191 127 GYVLPWGQMSFWGATVITNLLSAIPYIGDDLVQWLWGGFSVDNATLTRFFTFHFLLPFLIAALSLIHLLFLHETGSNNPL 206
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*
gi 327239214 161 GMKMNIDKIPFHPFFSLKDTMGFIILLFCLITLTLSYPYYLGDPDNFIPANPLVT 215
Cdd:MTH00191 207 GLNSDSDKIPFHPYFSYKDILGFFILLFLLLFLVLFSPNLLGDPENFIPANPLVT 261
|
|
| CYTB |
MTH00074 |
cytochrome b; Provisional |
1-215 |
4.94e-127 |
|
cytochrome b; Provisional
Pssm-ID: 177145 [Multi-domain] Cd Length: 380 Bit Score: 363.23 E-value: 4.94e-127
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 327239214 1 FLSMHYSANIELAFNSVTHICRDVYYGWLLRTLHANGASFFFICLYLHVGRGMYYNSSNLKFTWTIGVLILFLVMATAFM 80
Cdd:MTH00074 51 FLAMHYTADTSSAFSSVAHICRDVNYGWLMRNIHANGASFFFICIYLHIGRGLYYGSYMYKETWNIGVILLFLVMATAFV 130
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 327239214 81 GYVLPWGQMSFWGATVITNLLSAIPYLGQMLVQWVWGGFAVDNATLTRFYSFHFMLPFIISAFVMIHLLFLHQTGSSNPL 160
Cdd:MTH00074 131 GYVLPWGQMSFWGATVITNLLSAIPYMGDTLVQWIWGGFSVDKATLTRFFAFHFLLPFLIAGASIIHLLFLHETGSNNPT 210
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*
gi 327239214 161 GMKMNIDKIPFHPFFSLKDTMGFIILLFCLITLTLSYPYYLGDPDNFIPANPLVT 215
Cdd:MTH00074 211 GLNSNPDKVPFHPYFSYKDLLGFLIMLTALALLSLFSPNLLGDPDNFTPANPLVT 265
|
|
| CYTB |
MTH00100 |
cytochrome b; Provisional |
1-215 |
9.83e-126 |
|
cytochrome b; Provisional
Pssm-ID: 177162 [Multi-domain] Cd Length: 379 Bit Score: 360.11 E-value: 9.83e-126
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 327239214 1 FLSMHYSANIELAFNSVTHICRDVYYGWLLRTLHANGASFFFICLYLHVGRGMYYNSSNLKFTWTIGVLILFLVMATAFM 80
Cdd:MTH00100 50 FLAMHYTSDTTTAFSSVAHICRDVNYGWIIRYLHANGASMFFICLFLHVGRGLYYGSYLFLETWNIGIILLFTVMATAFM 129
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 327239214 81 GYVLPWGQMSFWGATVITNLLSAIPYLGQMLVQWVWGGFAVDNATLTRFYSFHFMLPFIISAFVMIHLLFLHQTGSSNPL 160
Cdd:MTH00100 130 GYVLPWGQMSFWGATVITNLLSAIPYIGTTLVEWIWGGFSVDKATLTRFFAFHFILPFIITALAMVHLLFLHETGSNNPS 209
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*
gi 327239214 161 GMKMNIDKIPFHPFFSLKDTMGFIILLFCLITLTLSYPYYLGDPDNFIPANPLVT 215
Cdd:MTH00100 210 GIPSDSDKIPFHPYYTIKDILGLLLLILTLMLLVLFSPDLLGDPDNYTPANPLNT 264
|
|
| CYTB |
MTH00145 |
cytochrome b; Provisional |
1-215 |
5.20e-125 |
|
cytochrome b; Provisional
Pssm-ID: 177203 [Multi-domain] Cd Length: 379 Bit Score: 358.06 E-value: 5.20e-125
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 327239214 1 FLSMHYSANIELAFNSVTHICRDVYYGWLLRTLHANGASFFFICLYLHVGRGMYYNSSNLKFTWTIGVLILFLVMATAFM 80
Cdd:MTH00145 51 FLSMHYTAHVDLAFSSVIHIMRDVNYGWLLRSLHANGASFFFICIYLHIGRGLYYGSYLMQHTWNIGVTLLLLSMGTAFL 130
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 327239214 81 GYVLPWGQMSFWGATVITNLLSAIPYLGQMLVQWVWGGFAVDNATLTRFYSFHFMLPFIISAFVMIHLLFLHQTGSSNPL 160
Cdd:MTH00145 131 GYVLPWGQMSFWGATVITNLLSAIPYVGKMLVEWVWGGFSVGNATLKRFFSLHFLLPFVILGLSVLHLLFLHETGSNNPL 210
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*
gi 327239214 161 GMKMNIDKIPFHPFFSLKDTMGFIILLFCLITLTLSYPYYLGDPDNFIPANPLVT 215
Cdd:MTH00145 211 GLDSDGDKVPFHPYYTIKDLVGFVVLLFLLVFLVLFFPNLLGDPENFIPANPMVT 265
|
|
| CYTB |
MTH00016 |
cytochrome b; Validated |
1-215 |
3.51e-121 |
|
cytochrome b; Validated
Pssm-ID: 177102 [Multi-domain] Cd Length: 378 Bit Score: 348.59 E-value: 3.51e-121
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 327239214 1 FLSMHYSANIELAFNSVTHICRDVYYGWLLRTLHANGASFFFICLYLHVGRGMYYNSSNLKFTWTIGVLILFLVMATAFM 80
Cdd:MTH00016 51 FLSMHYTPHIDLAFSSVAHISRDVNYGWLLRNLHANGASFFFICLYLHIGRGIYYGSYFLMETWNIGVILLLLTMATAFL 130
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 327239214 81 GYVLPWGQMSFWGATVITNLLSAIPYLGQMLVQWVWGGFAVDNATLTRFYSFHFMLPFIISAFVMIHLLFLHQTGSSNPL 160
Cdd:MTH00016 131 GYVLPWGQMSFWGATVITNLLSAIPYIGKMLVQWLWGGFSVDNATLTRFFALHFLLPFVIAALSMIHLLFLHQTGSNNPL 210
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*
gi 327239214 161 GMKMNIDKIPFHPFFSLKDTMGFIILLFCLITLTLSYPYYLGDPDNFIPANPLVT 215
Cdd:MTH00016 211 GVNSNSDKVPFHPYYTSKDIVGFIVMLFLLLSVVLLWPNILGDPENFIPANPLVT 265
|
|
| CYTB |
MTH00034 |
cytochrome b; Validated |
1-215 |
2.39e-117 |
|
cytochrome b; Validated
Pssm-ID: 177109 [Multi-domain] Cd Length: 379 Bit Score: 338.60 E-value: 2.39e-117
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 327239214 1 FLSMHYSANIELAFNSVTHICRDVYYGWLLRTLHANGASFFFICLYLHVGRGMYYNSSNLKFTWTIGVLILFLVMATAFM 80
Cdd:MTH00034 50 FLAMHYTADISLAFSSVSHICRDVNYGWLLRNIHANGASLFFICLYFHIGRGLYYGSYVNIETWNIGVILFLLTMLTAFV 129
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 327239214 81 GYVLPWGQMSFWGATVITNLLSAIPYLGQMLVQWVWGGFAVDNATLTRFYSFHFMLPFIISAFVMIHLLFLHQTGSSNPL 160
Cdd:MTH00034 130 GYVLPWGQMSFWAATVITNLVSAVPYIGTDIVQWIWGGFSVDNATLTRFFAFHFLFPFIIAALSIIHLLFLHQTGSNNPT 209
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*
gi 327239214 161 GMKMNIDKIPFHPFFSLKDTMGFIILLFCLITLTLSYPYYLGDPDNFIPANPLVT 215
Cdd:MTH00034 210 GLNSNYDKVPFHTYFTTKDLVGFLILFAALSSLALLFPTALNDPENFIPANPLVT 264
|
|
| CYTB |
MTH00224 |
cytochrome b; Provisional |
1-215 |
3.94e-102 |
|
cytochrome b; Provisional
Pssm-ID: 164767 [Multi-domain] Cd Length: 379 Bit Score: 300.30 E-value: 3.94e-102
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 327239214 1 FLSMHYSANIELAFNSVTHICRDVYYGWLLRTLHANGASFFFICLYLHVGRGMYYNSSNLKFTWTIGVLILFLVMATAFM 80
Cdd:MTH00224 51 FLSMHYAPNIEMAFSSVAHISRDVNYGWLLRSIHANGASMFFLFIYLHVGRGLYYGSFNLSETWNIGVILFILTMATAFL 130
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 327239214 81 GYVLPWGQMSFWGATVITNLLSAIPYLGQMLVQWVWGGFAVDNATLTRFYSFHFMLPFIISAFVMIHLLFLHQTGSSNPL 160
Cdd:MTH00224 131 GYVLPWGQMSFWGATVITNLFSAIPYIGKDLVEWIWGGFAVDNATLNRFFSFHFLLPFAIMGATILHIMFLHQTGSNNPI 210
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*
gi 327239214 161 GMKMNIDKIPFHPFFSLKDTMGFIILLFCLITLTLSYPYYLGDPDNFIPANPLVT 215
Cdd:MTH00224 211 GINADSARIPFHPYYSIKDALGYLIAILLLSLMVLFEPNLFTDPENFLMANPLVT 265
|
|
| CYTB |
MTH00022 |
cytochrome b; Validated |
1-215 |
1.87e-96 |
|
cytochrome b; Validated
Pssm-ID: 164595 [Multi-domain] Cd Length: 379 Bit Score: 285.83 E-value: 1.87e-96
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 327239214 1 FLSMHYSANIELAFNSVTHICRDVYYGWLLRTLHANGASFFFICLYLHVGRGMYYNSSNLKFTWTIGVLILFLVMATAFM 80
Cdd:MTH00022 49 FLSMHYCSDVSLAFASVGHIMRDVNYGFLLRYLHANGASLFFLCLYIHIGRGLYYGGYLKFHVWNVGVVIFLLTMATAFM 128
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 327239214 81 GYVLPWGQMSFWGATVITNLLSAIPYLGQMLVQWVWGGFAVDNATLTRFYSFHFMLPFIISAFVMIHLLFLHQTGSSNPL 160
Cdd:MTH00022 129 GYVLPWGQMSFWGATVITNLLSAIPYVGTDIVQWVWGGFSVSNATLNRFFSLHFLFPFILAFLVIVHLIYLHVDGSNNPI 208
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*
gi 327239214 161 GMKMNIDKIPFHPFFSLKDTMGFIILLFCLITLTLSYPYYLGDPDNFIPANPLVT 215
Cdd:MTH00022 209 GLNSSVDKVSFHVYYTSKDWYGIVVLFFLLSFIVYFAPNLLGDPENFIQANSLVT 263
|
|
| CYTB |
MTH00053 |
cytochrome b; Provisional |
1-215 |
3.04e-96 |
|
cytochrome b; Provisional
Pssm-ID: 164624 [Multi-domain] Cd Length: 381 Bit Score: 285.06 E-value: 3.04e-96
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 327239214 1 FLSMHYSANIELAFNSVTHICRDVYYGWLLRTLHANGASFFFICLYLHVGRGMYYNSSNLKFTWTIGVLILFLVMATAFM 80
Cdd:MTH00053 51 FLAMHYCADVNLAFSSVAHITRDVNYGFILRYLHANGASMFFLCVYFHIGRGIYYGSYTKIIVWNVGVLIFLLMILTAFI 130
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 327239214 81 GYVLPWGQMSFWGATVITNLLSAIPYLGQMLVQWVWGGFAVDNATLTRFYSFHFMLPFIISAFVMIHLLFLHQTGSSNPL 160
Cdd:MTH00053 131 GYVLPWGQMSFWAATVITNLLSAIPYVGDDIVRWVWGGFSVSNATLNRFYSLHYLLPFILAGLALVHLIALHEDGSNNPI 210
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*
gi 327239214 161 GMKMNIDKIPFHPFFSLKDTMGFIILLFCLITLTLSYPYYLGDPDNFIPANPLVT 215
Cdd:MTH00053 211 GVRSDIDKIPFHYYYVLKDLYGAVILLIILSIIVFLFPYSLGDAENFKQANPLVT 265
|
|
| CYTB |
MTH00086 |
cytochrome b; Provisional |
1-214 |
2.35e-76 |
|
cytochrome b; Provisional
Pssm-ID: 177151 [Multi-domain] Cd Length: 355 Bit Score: 233.68 E-value: 2.35e-76
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 327239214 1 FLSMHYSANIELAFNSVTHICRDVYYGWLLRTLHANGASFFFICLYLHVGRGMYYNSSNLKFTWTIGVLILFLVMATAFM 80
Cdd:MTH00086 39 FLAFYYTADSSMAFSSVQYIMYEVNFGWLFRIFHFNGASLFFIFLYLHIFKGLFMMSYRLKKVWISGLTIYLLVMMEAFM 118
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 327239214 81 GYVLPWGQMSFWGATVITNLLSAIPYLGQMLVQWVWGGFAVDNATLTRFYSFHFMLPFIISAFVMIHLLFLHQTGSSNPL 160
Cdd:MTH00086 119 GYVLVWAQMSFWAAVVITSLLSVIPIWGPSIVMWIWGGFGVSSATLKFFFVLHFLLPWGLLVLVLFHLIFLHSTGSTSSL 198
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....
gi 327239214 161 GMKMNIDKIPFHPFFSLKDTMGFIILLFcLITLTLSYPYYLGDPDNFIPANPLV 214
Cdd:MTH00086 199 YCHGDYDKICFGPEYWNKDAYNIIFWLV-FIIFSLFYPFNLGDPEMFIEADPMM 251
|
|
| CYTB |
MTH00033 |
cytochrome b; Provisional |
1-215 |
1.38e-75 |
|
cytochrome b; Provisional
Pssm-ID: 133672 [Multi-domain] Cd Length: 383 Bit Score: 232.52 E-value: 1.38e-75
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 327239214 1 FLSMHYSANIELAFNSVTHICRDVYYGWLLRTLHANGASFFFICLYLHVGRGMYYNSSNLKFTWTIGVLILFLVMATAFM 80
Cdd:MTH00033 47 LLAMHYRSDVSLAFSSVAHIVRDVNYGWILRYVHANGASLFFICVYCHIGRGLYYGGYSRVLTWIVGVLIFFIMMLTAFI 126
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 327239214 81 GYVLPWGQMSFWGATVITNLLSAIPYLGQMLVQWVWGGFAVDNATLTRFYSFHFMLPFIISAFVMIHLLFLHQTGSSNPL 160
Cdd:MTH00033 127 GYVLPWGQMSFWAATVITNLVSAIPSVGGSIVEWIWGGFSVSNCTLNRFFSLHYLLPFVLVGLVLAHLLTLHEKGSNEPL 206
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*..
gi 327239214 161 GMKMNIDKIPFHPFFSLKDTMGFIIL--LFCLITLTLSYPYYLGDPDNFIPANPLVT 215
Cdd:MTH00033 207 GLVGLSDRTAFHVYFTIKDILGFLILfgVFVIIGIEPRIETLLQDPENFIQANPLVT 263
|
|
| QcrB/PetB |
COG1290 |
Cytochrome b subunit of the bc complex [Energy production and conversion]; |
1-215 |
1.54e-75 |
|
Cytochrome b subunit of the bc complex [Energy production and conversion];
Pssm-ID: 440901 [Multi-domain] Cd Length: 393 Bit Score: 232.76 E-value: 1.54e-75
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 327239214 1 FLSMHYSANIELAFNSVTHICRDVYYGWLLRTLHANGASFFFICLYLHVGRGMYYNSsnLK----FTWTIGVLILFLVMA 76
Cdd:COG1290 59 FLTMYYKPSASEAFASVEYIMRDVPGGWLIRYMHHWGASLFFAAVYLHMFRGFFYGA--YKkpreLNWIIGVLLLLLTMA 136
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 327239214 77 TAFMGYVLPWGQMSFWGATVITNLLSAIPYLGQMLVQWVWGGFAVDNATLTRFYSFHFM-LPFIISAFVMIHLLFLHQTG 155
Cdd:COG1290 137 EAFTGYSLPWDQLSYWGARVITGLFGAIPVIGTWLVTWLFGGEFPGDATLNRFFALHVLlLPALLLALVVLHLWLLHRHG 216
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 327239214 156 SSNPLGMKM----NIDKIPFHPFFSLKDTMGFIILLFCLITLTLSYPyyLGDPDNFIPANPLVT 215
Cdd:COG1290 217 HNNPPGPERkkteKVDGVPFHPYYTVKDGFGFFVFLGVFALLAFFFP--INPPPNYGPANPLAT 278
|
|
| Cytochrome_b_N |
cd00284 |
Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit ... |
1-157 |
1.44e-66 |
|
Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit mitochondrial respiratory enzyme. Cytochrome b spans the mitochondrial membrane with 8 transmembrane helices (A-H) in eukaryotes. In plants and cyanobacteria, cytochrome b6 is analogous to eukaryote cytochrome b, containing two chains: helices A-D are encoded by the petB gene and helices E-H are encoded by the petD gene in these organisms. Cytochrome b/b6 contains two bound hemes and two ubiquinol/ubiquinone binding sites. The C-terminal portion of cytochrome b is described in a separate CD.
Pssm-ID: 238176 Cd Length: 200 Bit Score: 203.37 E-value: 1.44e-66
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 327239214 1 FLSMHYSANIELAFNSVTHICRDVYYGWLLRTLHANGASFFFICLYLHVGRGMYYNS--SNLKFTWTIGVLILFLVMATA 78
Cdd:cd00284 42 FLAMHYTPDVTLAFSSVQYIMRDVNFGWLIRSLHANGASMFFLMLYLHIFRGLYYGSykKPRELTWVIGVILLLLTMATA 121
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 327239214 79 FMGYVLPWGQMSFWGATVITNLLSAIPYLGQMLVQWVWGGFAVDNATLTRFYSFHFMLPFIISAFVMIHLLFLHQTGSS 157
Cdd:cd00284 122 FMGYVLPWGQMSYWGATVITNLFSAIPVIGITLVEWLWGGFSVDNATLTRFFALHFLLPFIIAVIVILHLLFLHEQGSS 200
|
|
| Cytochrome_B |
pfam00033 |
Cytochrome b/b6/petB; |
1-155 |
3.14e-61 |
|
Cytochrome b/b6/petB;
Pssm-ID: 306530 Cd Length: 189 Bit Score: 189.52 E-value: 3.14e-61
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 327239214 1 FLSMHYSANIELAFNSVTHICRDVYYGWLLRTLHANGASFFFICLYLHVGRGMYYN--SSNLKFTWTIGVLILFLVMATA 78
Cdd:pfam00033 33 FLAFYYTPDVTLAFLSVQYIMRDVNFGWLIRSVHANGASMFFLMLYLHIFRGLYYGgfSYPRELTWVIGVILLVLTMSTA 112
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 327239214 79 FMGYVLPWGQMSFWGATVITNLLSAIPYLGQMLVQWVWGGFAVDNATLTRFYSFHFMLPFIISAFVMIHLLFLHQTG 155
Cdd:pfam00033 113 FIGYVLPWGQMSYWGATVITNLLSAIPVIGDTLVEWIWGSFSVDQATLTRFFSLHFLLPFILAILMLLHLLFLHETG 189
|
|
| CYTB |
MTH00046 |
cytochrome b; Validated |
1-215 |
1.73e-52 |
|
cytochrome b; Validated
Pssm-ID: 177121 [Multi-domain] Cd Length: 355 Bit Score: 172.47 E-value: 1.73e-52
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 327239214 1 FLSMHYSANIELAFNSVTHICRDVYYGWLLRTLHANGASFFFICLYLHVGRGMYYNSSNLKFTWTIGVLILFLVMATAFM 80
Cdd:MTH00046 41 LLSLLYVADSLCSFFCVMSLSNDSFFTWCVRYWHIWGVNVLFILLFIHMGRALYYSSYSKKGVWNVGFILYLLVMVEAFL 120
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 327239214 81 GYVLPWGQMSFWGATVITNLLSAIPYLGQMLVQWVWGGFAVDNATLTRFYSFHFMLPFIISAFVMIHLLFLHQTGSSNPL 160
Cdd:MTH00046 121 GYILPWHQMSYWAATVLTSIVDSVPIVGSLVYKYIVGGFSVTGVTLVRVFSVHICLGFVILGLMVVHLFYLHKSGSSNPL 200
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*.
gi 327239214 161 GMKMNI-DKIPFHPFFSLKDTMGFIILLFCLITLTLSYPYYLGDPDNFIPANPLVT 215
Cdd:MTH00046 201 FSSNGYsDVVYFHSYFTVKDLFLFMVVCSLLVFWLFVSPDLVLDIEAYLEADPLVT 256
|
|
| Cytochrom_B_N_2 |
pfam13631 |
Cytochrome b(N-terminal)/b6/petB; |
39-204 |
1.46e-44 |
|
Cytochrome b(N-terminal)/b6/petB;
Pssm-ID: 433364 Cd Length: 169 Bit Score: 146.23 E-value: 1.46e-44
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 327239214 39 SFFFICLYLHVGRGMYYNS--SNLKFTWTIGVLILFLVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYLGQMLVQWVW 116
Cdd:pfam13631 1 YIFIAAIYVHMLRIFFTGAyrKPRELNWIIGVLLLLLTLGEGFTGYSLPDDLLSGTGLRIGLGILSSIPVVGTWLVWLLF 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 327239214 117 GGFAVDNATLTRFYSFHFM-LPFIISAFVMIHLLFLHQTGSSNPLGMKMNIDKIPFHPFFSLKDTMGFIILLFCLITLTL 195
Cdd:pfam13631 81 GGPFPGTATIPRFYALHILlLPGLILALIVAHLLLVEKHGQFPPPGTEKNVVGVPFWPVFAVKMLLFFLITVALLIGLAQ 160
|
....*....
gi 327239214 196 SYPYYLGDP 204
Cdd:pfam13631 161 INPIWLGGP 169
|
|
| PRK03735 |
PRK03735 |
cytochrome b6; Provisional |
1-160 |
4.67e-32 |
|
cytochrome b6; Provisional
Pssm-ID: 179639 Cd Length: 223 Bit Score: 115.96 E-value: 4.67e-32
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 327239214 1 FLSMHYSANIELAFNSVTHICRDVYYGWLLRTLHANGASFFFICLYLHVGRgMYYNSSNLK---FTWTIGVLILFLVMAT 77
Cdd:PRK03735 61 FLTMYYVPDIKNAYESVYYLQNEVAFGWIVRGMHHWGASLVIVMMFLHTLR-VFFTGGYKKpreLNWVVGVLIFFVTVGL 139
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 327239214 78 AFMGYVLPWGQMSFWGATVITNLLSAIPYLGQMLVQWVWGGFAVDNATLTRFYSFH-FMLPFIISAFVMIHLLFLHQTGS 156
Cdd:PRK03735 140 GFTGYLLPWDQKAYFATKVGSQIAEAIPVIGDFIKTLLRGGEIVGAQTLTRFFAIHvFFLPWALAVLMLAHFLMIRKQGI 219
|
....
gi 327239214 157 SNPL 160
Cdd:PRK03735 220 SGPL 223
|
|
| petB |
CHL00070 |
cytochrome b6 |
2-160 |
5.14e-29 |
|
cytochrome b6
Pssm-ID: 177009 Cd Length: 215 Bit Score: 107.88 E-value: 5.14e-29
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 327239214 2 LSMHYSANIELAFNSVTHICRDVYYGWLLRTLHANGASFFFICLYLHVGRgmYYNSSNLK----FTWTIGVLILFLVMAT 77
Cdd:CHL00070 54 MTFYYRPTVTEAFASVQYIMTEVNFGWLIRSVHRWSASMMVLMMILHVFR--VYLTGGFKkpreLTWVTGVVLAVLTVSF 131
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 327239214 78 AFMGYVLPWGQMSFWGATVITNLLSAIPYLGQMLVQWVWGGFAVDNATLTRFYSFH-FMLPFIISAFVMIHLLFLHQTGS 156
Cdd:CHL00070 132 GVTGYSLPWDQIGYWAVKIVTGVPEAIPVIGSPLVELLRGSVSVGQSTLTRFYSLHtFVLPLLTAVFMLMHFLMIRKQGI 211
|
....
gi 327239214 157 SNPL 160
Cdd:CHL00070 212 SGPL 215
|
|
| cytochrome_b_C |
cd00290 |
Cytochrome b(C-terminus)/b6/petD: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit ... |
158-215 |
4.07e-11 |
|
Cytochrome b(C-terminus)/b6/petD: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit mitochondrial respiratory enzyme. Cytochrome b spans the mitochondrial membrane with 8 transmembrane helices (A-H) in eukaryotes. In plants and cyanobacteria, cytochrome b6 is analogous to eukaryote cytochrome b, containing two chains: helices A-D are encoded by the petB gene and helices E-H are encoded by the petD gene in these organisms. Cytochrome b/b6 contains two bound hemes and two ubiquinol/ubiquinone binding sites. The C-terminal domain is involved in forming the ubiquinol/ubiquinone binding sites, but not the heme binding sites. The N-terminal portion of cytochrome b, which contains both heme binding sites, is described in a separate CD.
Pssm-ID: 238179 [Multi-domain] Cd Length: 147 Bit Score: 58.81 E-value: 4.07e-11
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|....*...
gi 327239214 158 NPLGMKMNIDKIPFHPFFSLKDTMGFIILLFCLITLTLSYPYYLGDPDNFIPANPLVT 215
Cdd:cd00290 1 NPLGLASDMDKISFHPYFWPKDLLGAFPILIIFMILVFYAPNLLGHPDNGIPANPLAT 58
|
|
|