|
Name |
Accession |
Description |
Interval |
E-value |
| CYTB |
MTH00156 |
cytochrome b; Provisional |
1-213 |
2.92e-146 |
|
cytochrome b; Provisional
Pssm-ID: 214440 [Multi-domain] Cd Length: 356 Bit Score: 411.10 E-value: 2.92e-146
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 327239200 1 SMHYCANIELAFNSVTHICRDVNYGWLLRTLHANGASFFFICLYLHVGRGMYYNSSNLKFTWMIGVLILFLVMATAFMGY 80
Cdd:MTH00156 42 AMHYTADIELAFSSVIHICRDVNYGWLLRTLHANGASFFFICIYLHIGRGIYYGSYKLKHTWMSGVIILFLVMATAFLGY 121
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 327239200 81 VLPWGQMSFWGATVITNLLSAIPYLGQMLVQWVWGGFAVDNATLTRFYSFHFMLPFIISAFVMIHLLFLHQTGSSNPLGM 160
Cdd:MTH00156 122 VLPWGQMSFWGATVITNLLSAIPYLGTDLVQWIWGGFSVDNATLTRFFTFHFLLPFIILAMVMIHLLFLHQTGSNNPLGL 201
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|...
gi 327239200 161 KMNIDKIPFHPFFSLKDTVGFIILLSCLILLTLTYPYYLGDPDNFIPANPLVT 213
Cdd:MTH00156 202 NSNIDKIPFHPYFTFKDLVGFIIMLMLLILLTLINPYLLGDPENFIPANPLVT 254
|
|
| QcrB/PetB |
COG1290 |
Cytochrome b subunit of the bc complex [Energy production and conversion]; |
2-213 |
2.74e-75 |
|
Cytochrome b subunit of the bc complex [Energy production and conversion];
Pssm-ID: 440901 [Multi-domain] Cd Length: 393 Bit Score: 231.99 E-value: 2.74e-75
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 327239200 2 MHYCANIELAFNSVTHICRDVNYGWLLRTLHANGASFFFICLYLHVGRGMYYNSsnLK----FTWMIGVLILFLVMATAF 77
Cdd:COG1290 62 MYYKPSASEAFASVEYIMRDVPGGWLIRYMHHWGASLFFAAVYLHMFRGFFYGA--YKkpreLNWIIGVLLLLLTMAEAF 139
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 327239200 78 MGYVLPWGQMSFWGATVITNLLSAIPYLGQMLVQWVWGGFAVDNATLTRFYSFHFM-LPFIISAFVMIHLLFLHQTGSSN 156
Cdd:COG1290 140 TGYSLPWDQLSYWGARVITGLFGAIPVIGTWLVTWLFGGEFPGDATLNRFFALHVLlLPALLLALVVLHLWLLHRHGHNN 219
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 327239200 157 PLGMKM----NIDKIPFHPFFSLKDTVGFIILLSCLILLTLTYPyyLGDPDNFIPANPLVT 213
Cdd:COG1290 220 PPGPERkkteKVDGVPFHPYYTVKDGFGFFVFLGVFALLAFFFP--INPPPNYGPANPLAT 278
|
|
| Cytochrome_b_N |
cd00284 |
Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit ... |
1-155 |
4.92e-68 |
|
Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit mitochondrial respiratory enzyme. Cytochrome b spans the mitochondrial membrane with 8 transmembrane helices (A-H) in eukaryotes. In plants and cyanobacteria, cytochrome b6 is analogous to eukaryote cytochrome b, containing two chains: helices A-D are encoded by the petB gene and helices E-H are encoded by the petD gene in these organisms. Cytochrome b/b6 contains two bound hemes and two ubiquinol/ubiquinone binding sites. The C-terminal portion of cytochrome b is described in a separate CD.
Pssm-ID: 238176 Cd Length: 200 Bit Score: 207.22 E-value: 4.92e-68
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 327239200 1 SMHYCANIELAFNSVTHICRDVNYGWLLRTLHANGASFFFICLYLHVGRGMYYNS--SNLKFTWMIGVLILFLVMATAFM 78
Cdd:cd00284 44 AMHYTPDVTLAFSSVQYIMRDVNFGWLIRSLHANGASMFFLMLYLHIFRGLYYGSykKPRELTWVIGVILLLLTMATAFM 123
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 327239200 79 GYVLPWGQMSFWGATVITNLLSAIPYLGQMLVQWVWGGFAVDNATLTRFYSFHFMLPFIISAFVMIHLLFLHQTGSS 155
Cdd:cd00284 124 GYVLPWGQMSYWGATVITNLFSAIPVIGITLVEWLWGGFSVDNATLTRFFALHFLLPFIIAVIVILHLLFLHEQGSS 200
|
|
| Cytochrome_B |
pfam00033 |
Cytochrome b/b6/petB; |
1-153 |
3.42e-63 |
|
Cytochrome b/b6/petB;
Pssm-ID: 306530 Cd Length: 189 Bit Score: 194.52 E-value: 3.42e-63
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 327239200 1 SMHYCANIELAFNSVTHICRDVNYGWLLRTLHANGASFFFICLYLHVGRGMYYN--SSNLKFTWMIGVLILFLVMATAFM 78
Cdd:pfam00033 35 AFYYTPDVTLAFLSVQYIMRDVNFGWLIRSVHANGASMFFLMLYLHIFRGLYYGgfSYPRELTWVIGVILLVLTMSTAFI 114
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 327239200 79 GYVLPWGQMSFWGATVITNLLSAIPYLGQMLVQWVWGGFAVDNATLTRFYSFHFMLPFIISAFVMIHLLFLHQTG 153
Cdd:pfam00033 115 GYVLPWGQMSYWGATVITNLLSAIPVIGDTLVEWIWGSFSVDQATLTRFFSLHFLLPFILAILMLLHLLFLHETG 189
|
|
| |
|
Name |
Accession |
Description |
Interval |
E-value |
| CYTB |
MTH00156 |
cytochrome b; Provisional |
1-213 |
2.92e-146 |
|
cytochrome b; Provisional
Pssm-ID: 214440 [Multi-domain] Cd Length: 356 Bit Score: 411.10 E-value: 2.92e-146
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 327239200 1 SMHYCANIELAFNSVTHICRDVNYGWLLRTLHANGASFFFICLYLHVGRGMYYNSSNLKFTWMIGVLILFLVMATAFMGY 80
Cdd:MTH00156 42 AMHYTADIELAFSSVIHICRDVNYGWLLRTLHANGASFFFICIYLHIGRGIYYGSYKLKHTWMSGVIILFLVMATAFLGY 121
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 327239200 81 VLPWGQMSFWGATVITNLLSAIPYLGQMLVQWVWGGFAVDNATLTRFYSFHFMLPFIISAFVMIHLLFLHQTGSSNPLGM 160
Cdd:MTH00156 122 VLPWGQMSFWGATVITNLLSAIPYLGTDLVQWIWGGFSVDNATLTRFFTFHFLLPFIILAMVMIHLLFLHQTGSNNPLGL 201
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|...
gi 327239200 161 KMNIDKIPFHPFFSLKDTVGFIILLSCLILLTLTYPYYLGDPDNFIPANPLVT 213
Cdd:MTH00156 202 NSNIDKIPFHPYFTFKDLVGFIIMLMLLILLTLINPYLLGDPENFIPANPLVT 254
|
|
| CYTB |
MTH00119 |
cytochrome b; Provisional |
2-213 |
1.15e-126 |
|
cytochrome b; Provisional
Pssm-ID: 214425 [Multi-domain] Cd Length: 380 Bit Score: 362.30 E-value: 1.15e-126
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 327239200 2 MHYCANIELAFNSVTHICRDVNYGWLLRTLHANGASFFFICLYLHVGRGMYYNSSNLKFTWMIGVLILFLVMATAFMGYV 81
Cdd:MTH00119 54 MHYTADISLAFSSVAHICRDVQYGWLIRNLHANGASMFFICIYLHIGRGLYYGSYLYKETWNTGVILLLLLMATAFVGYV 133
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 327239200 82 LPWGQMSFWGATVITNLLSAIPYLGQMLVQWVWGGFAVDNATLTRFYSFHFMLPFIISAFVMIHLLFLHQTGSSNPLGMK 161
Cdd:MTH00119 134 LPWGQMSFWGATVITNLLSAIPYIGQTLVEWIWGGFSVDNPTLTRFFALHFLLPFLIAGLTLIHLLFLHETGSNNPLGLN 213
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|..
gi 327239200 162 MNIDKIPFHPFFSLKDTVGFIILLSCLILLTLTYPYYLGDPDNFIPANPLVT 213
Cdd:MTH00119 214 SNTDKIPFHPYFSYKDLLGLTLMLTLLLTLALFSPNLLGDPENFTPANPLVT 265
|
|
| CYTB |
MTH00191 |
cytochrome b; Provisional |
1-213 |
1.05e-124 |
|
cytochrome b; Provisional
Pssm-ID: 177239 [Multi-domain] Cd Length: 365 Bit Score: 356.92 E-value: 1.05e-124
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 327239200 1 SMHYCANIELAFNSVTHICRDVNYGWLLRTLHANGASFFFICLYLHVGRGMYYNSSNLKFTWMIGVLILFLVMATAFMGY 80
Cdd:MTH00191 49 AMHYTADISLAFSSVVHICRDVNYGWLLRNIHANGASFFFICIYLHIGRGLYYGSYLNKETWNVGVILLILSMATAFLGY 128
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 327239200 81 VLPWGQMSFWGATVITNLLSAIPYLGQMLVQWVWGGFAVDNATLTRFYSFHFMLPFIISAFVMIHLLFLHQTGSSNPLGM 160
Cdd:MTH00191 129 VLPWGQMSFWGATVITNLLSAIPYIGDDLVQWLWGGFSVDNATLTRFFTFHFLLPFLIAALSLIHLLFLHETGSNNPLGL 208
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|...
gi 327239200 161 KMNIDKIPFHPFFSLKDTVGFIILLSCLILLTLTYPYYLGDPDNFIPANPLVT 213
Cdd:MTH00191 209 NSDSDKIPFHPYFSYKDILGFFILLFLLLFLVLFSPNLLGDPENFIPANPLVT 261
|
|
| CYTB |
MTH00131 |
cytochrome b; Provisional |
1-213 |
2.05e-124 |
|
cytochrome b; Provisional
Pssm-ID: 177189 [Multi-domain] Cd Length: 380 Bit Score: 356.65 E-value: 2.05e-124
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 327239200 1 SMHYCANIELAFNSVTHICRDVNYGWLLRTLHANGASFFFICLYLHVGRGMYYNSSNLKFTWMIGVLILFLVMATAFMGY 80
Cdd:MTH00131 52 AMHYTSDISTAFSSVAHICRDVNYGWLIRNLHANGASFFFICIYLHIGRGLYYGSYLYKETWNIGVVLLLLVMMTAFVGY 131
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 327239200 81 VLPWGQMSFWGATVITNLLSAIPYLGQMLVQWVWGGFAVDNATLTRFYSFHFMLPFIISAFVMIHLLFLHQTGSSNPLGM 160
Cdd:MTH00131 132 VLPWGQMSFWGATVITNLLSAVPYVGNTLVQWIWGGFSVDNATLTRFFAFHFLFPFVIAAATILHLLFLHETGSNNPLGL 211
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|...
gi 327239200 161 KMNIDKIPFHPFFSLKDTVGFIILLSCLILLTLTYPYYLGDPDNFIPANPLVT 213
Cdd:MTH00131 212 NSDADKISFHPYFSYKDLLGFAILLLALTSLALFSPNLLGDPDNFTPANPLVT 264
|
|
| CYTB |
MTH00074 |
cytochrome b; Provisional |
1-213 |
6.90e-124 |
|
cytochrome b; Provisional
Pssm-ID: 177145 [Multi-domain] Cd Length: 380 Bit Score: 355.14 E-value: 6.90e-124
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 327239200 1 SMHYCANIELAFNSVTHICRDVNYGWLLRTLHANGASFFFICLYLHVGRGMYYNSSNLKFTWMIGVLILFLVMATAFMGY 80
Cdd:MTH00074 53 AMHYTADTSSAFSSVAHICRDVNYGWLMRNIHANGASFFFICIYLHIGRGLYYGSYMYKETWNIGVILLFLVMATAFVGY 132
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 327239200 81 VLPWGQMSFWGATVITNLLSAIPYLGQMLVQWVWGGFAVDNATLTRFYSFHFMLPFIISAFVMIHLLFLHQTGSSNPLGM 160
Cdd:MTH00074 133 VLPWGQMSFWGATVITNLLSAIPYMGDTLVQWIWGGFSVDKATLTRFFAFHFLLPFLIAGASIIHLLFLHETGSNNPTGL 212
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|...
gi 327239200 161 KMNIDKIPFHPFFSLKDTVGFIILLSCLILLTLTYPYYLGDPDNFIPANPLVT 213
Cdd:MTH00074 213 NSNPDKVPFHPYFSYKDLLGFLIMLTALALLSLFSPNLLGDPDNFTPANPLVT 265
|
|
| CYTB |
MTH00145 |
cytochrome b; Provisional |
1-213 |
2.99e-122 |
|
cytochrome b; Provisional
Pssm-ID: 177203 [Multi-domain] Cd Length: 379 Bit Score: 351.13 E-value: 2.99e-122
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 327239200 1 SMHYCANIELAFNSVTHICRDVNYGWLLRTLHANGASFFFICLYLHVGRGMYYNSSNLKFTWMIGVLILFLVMATAFMGY 80
Cdd:MTH00145 53 SMHYTAHVDLAFSSVIHIMRDVNYGWLLRSLHANGASFFFICIYLHIGRGLYYGSYLMQHTWNIGVTLLLLSMGTAFLGY 132
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 327239200 81 VLPWGQMSFWGATVITNLLSAIPYLGQMLVQWVWGGFAVDNATLTRFYSFHFMLPFIISAFVMIHLLFLHQTGSSNPLGM 160
Cdd:MTH00145 133 VLPWGQMSFWGATVITNLLSAIPYVGKMLVEWVWGGFSVGNATLKRFFSLHFLLPFVILGLSVLHLLFLHETGSNNPLGL 212
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|...
gi 327239200 161 KMNIDKIPFHPFFSLKDTVGFIILLSCLILLTLTYPYYLGDPDNFIPANPLVT 213
Cdd:MTH00145 213 DSDGDKVPFHPYYTIKDLVGFVVLLFLLVFLVLFFPNLLGDPENFIPANPMVT 265
|
|
| CYTB |
MTH00100 |
cytochrome b; Provisional |
1-213 |
4.28e-121 |
|
cytochrome b; Provisional
Pssm-ID: 177162 [Multi-domain] Cd Length: 379 Bit Score: 348.17 E-value: 4.28e-121
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 327239200 1 SMHYCANIELAFNSVTHICRDVNYGWLLRTLHANGASFFFICLYLHVGRGMYYNSSNLKFTWMIGVLILFLVMATAFMGY 80
Cdd:MTH00100 52 AMHYTSDTTTAFSSVAHICRDVNYGWIIRYLHANGASMFFICLFLHVGRGLYYGSYLFLETWNIGIILLFTVMATAFMGY 131
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 327239200 81 VLPWGQMSFWGATVITNLLSAIPYLGQMLVQWVWGGFAVDNATLTRFYSFHFMLPFIISAFVMIHLLFLHQTGSSNPLGM 160
Cdd:MTH00100 132 VLPWGQMSFWGATVITNLLSAIPYIGTTLVEWIWGGFSVDKATLTRFFAFHFILPFIITALAMVHLLFLHETGSNNPSGI 211
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|...
gi 327239200 161 KMNIDKIPFHPFFSLKDTVGFIILLSCLILLTLTYPYYLGDPDNFIPANPLVT 213
Cdd:MTH00100 212 PSDSDKIPFHPYYTIKDILGLLLLILTLMLLVLFSPDLLGDPDNYTPANPLNT 264
|
|
| CYTB |
MTH00016 |
cytochrome b; Validated |
1-213 |
1.67e-120 |
|
cytochrome b; Validated
Pssm-ID: 177102 [Multi-domain] Cd Length: 378 Bit Score: 346.66 E-value: 1.67e-120
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 327239200 1 SMHYCANIELAFNSVTHICRDVNYGWLLRTLHANGASFFFICLYLHVGRGMYYNSSNLKFTWMIGVLILFLVMATAFMGY 80
Cdd:MTH00016 53 SMHYTPHIDLAFSSVAHISRDVNYGWLLRNLHANGASFFFICLYLHIGRGIYYGSYFLMETWNIGVILLLLTMATAFLGY 132
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 327239200 81 VLPWGQMSFWGATVITNLLSAIPYLGQMLVQWVWGGFAVDNATLTRFYSFHFMLPFIISAFVMIHLLFLHQTGSSNPLGM 160
Cdd:MTH00016 133 VLPWGQMSFWGATVITNLLSAIPYIGKMLVQWLWGGFSVDNATLTRFFALHFLLPFVIAALSMIHLLFLHQTGSNNPLGV 212
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|...
gi 327239200 161 KMNIDKIPFHPFFSLKDTVGFIILLSCLILLTLTYPYYLGDPDNFIPANPLVT 213
Cdd:MTH00016 213 NSNSDKVPFHPYYTSKDIVGFIVMLFLLLSVVLLWPNILGDPENFIPANPLVT 265
|
|
| CYTB |
MTH00034 |
cytochrome b; Validated |
1-213 |
3.73e-115 |
|
cytochrome b; Validated
Pssm-ID: 177109 [Multi-domain] Cd Length: 379 Bit Score: 333.21 E-value: 3.73e-115
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 327239200 1 SMHYCANIELAFNSVTHICRDVNYGWLLRTLHANGASFFFICLYLHVGRGMYYNSSNLKFTWMIGVLILFLVMATAFMGY 80
Cdd:MTH00034 52 AMHYTADISLAFSSVSHICRDVNYGWLLRNIHANGASLFFICLYFHIGRGLYYGSYVNIETWNIGVILFLLTMLTAFVGY 131
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 327239200 81 VLPWGQMSFWGATVITNLLSAIPYLGQMLVQWVWGGFAVDNATLTRFYSFHFMLPFIISAFVMIHLLFLHQTGSSNPLGM 160
Cdd:MTH00034 132 VLPWGQMSFWAATVITNLVSAVPYIGTDIVQWIWGGFSVDNATLTRFFAFHFLFPFIIAALSIIHLLFLHQTGSNNPTGL 211
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|...
gi 327239200 161 KMNIDKIPFHPFFSLKDTVGFIILLSCLILLTLTYPYYLGDPDNFIPANPLVT 213
Cdd:MTH00034 212 NSNYDKVPFHTYFTTKDLVGFLILFAALSSLALLFPTALNDPENFIPANPLVT 264
|
|
| CYTB |
MTH00224 |
cytochrome b; Provisional |
1-213 |
8.14e-101 |
|
cytochrome b; Provisional
Pssm-ID: 164767 [Multi-domain] Cd Length: 379 Bit Score: 296.83 E-value: 8.14e-101
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 327239200 1 SMHYCANIELAFNSVTHICRDVNYGWLLRTLHANGASFFFICLYLHVGRGMYYNSSNLKFTWMIGVLILFLVMATAFMGY 80
Cdd:MTH00224 53 SMHYAPNIEMAFSSVAHISRDVNYGWLLRSIHANGASMFFLFIYLHVGRGLYYGSFNLSETWNIGVILFILTMATAFLGY 132
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 327239200 81 VLPWGQMSFWGATVITNLLSAIPYLGQMLVQWVWGGFAVDNATLTRFYSFHFMLPFIISAFVMIHLLFLHQTGSSNPLGM 160
Cdd:MTH00224 133 VLPWGQMSFWGATVITNLFSAIPYIGKDLVEWIWGGFAVDNATLNRFFSFHFLLPFAIMGATILHIMFLHQTGSNNPIGI 212
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|...
gi 327239200 161 KMNIDKIPFHPFFSLKDTVGFIILLSCLILLTLTYPYYLGDPDNFIPANPLVT 213
Cdd:MTH00224 213 NADSARIPFHPYYSIKDALGYLIAILLLSLMVLFEPNLFTDPENFLMANPLVT 265
|
|
| CYTB |
MTH00022 |
cytochrome b; Validated |
1-213 |
5.53e-97 |
|
cytochrome b; Validated
Pssm-ID: 164595 [Multi-domain] Cd Length: 379 Bit Score: 286.98 E-value: 5.53e-97
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 327239200 1 SMHYCANIELAFNSVTHICRDVNYGWLLRTLHANGASFFFICLYLHVGRGMYYNSSNLKFTWMIGVLILFLVMATAFMGY 80
Cdd:MTH00022 51 SMHYCSDVSLAFASVGHIMRDVNYGFLLRYLHANGASLFFLCLYIHIGRGLYYGGYLKFHVWNVGVVIFLLTMATAFMGY 130
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 327239200 81 VLPWGQMSFWGATVITNLLSAIPYLGQMLVQWVWGGFAVDNATLTRFYSFHFMLPFIISAFVMIHLLFLHQTGSSNPLGM 160
Cdd:MTH00022 131 VLPWGQMSFWGATVITNLLSAIPYVGTDIVQWVWGGFSVSNATLNRFFSLHFLFPFILAFLVIVHLIYLHVDGSNNPIGL 210
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|...
gi 327239200 161 KMNIDKIPFHPFFSLKDTVGFIILLSCLILLTLTYPYYLGDPDNFIPANPLVT 213
Cdd:MTH00022 211 NSSVDKVSFHVYYTSKDWYGIVVLFFLLSFIVYFAPNLLGDPENFIQANSLVT 263
|
|
| CYTB |
MTH00053 |
cytochrome b; Provisional |
1-213 |
5.86e-95 |
|
cytochrome b; Provisional
Pssm-ID: 164624 [Multi-domain] Cd Length: 381 Bit Score: 281.98 E-value: 5.86e-95
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 327239200 1 SMHYCANIELAFNSVTHICRDVNYGWLLRTLHANGASFFFICLYLHVGRGMYYNSSNLKFTWMIGVLILFLVMATAFMGY 80
Cdd:MTH00053 53 AMHYCADVNLAFSSVAHITRDVNYGFILRYLHANGASMFFLCVYFHIGRGIYYGSYTKIIVWNVGVLIFLLMILTAFIGY 132
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 327239200 81 VLPWGQMSFWGATVITNLLSAIPYLGQMLVQWVWGGFAVDNATLTRFYSFHFMLPFIISAFVMIHLLFLHQTGSSNPLGM 160
Cdd:MTH00053 133 VLPWGQMSFWAATVITNLLSAIPYVGDDIVRWVWGGFSVSNATLNRFYSLHYLLPFILAGLALVHLIALHEDGSNNPIGV 212
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|...
gi 327239200 161 KMNIDKIPFHPFFSLKDTVGFIILLSCLILLTLTYPYYLGDPDNFIPANPLVT 213
Cdd:MTH00053 213 RSDIDKIPFHYYYVLKDLYGAVILLIILSIIVFLFPYSLGDAENFKQANPLVT 265
|
|
| QcrB/PetB |
COG1290 |
Cytochrome b subunit of the bc complex [Energy production and conversion]; |
2-213 |
2.74e-75 |
|
Cytochrome b subunit of the bc complex [Energy production and conversion];
Pssm-ID: 440901 [Multi-domain] Cd Length: 393 Bit Score: 231.99 E-value: 2.74e-75
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 327239200 2 MHYCANIELAFNSVTHICRDVNYGWLLRTLHANGASFFFICLYLHVGRGMYYNSsnLK----FTWMIGVLILFLVMATAF 77
Cdd:COG1290 62 MYYKPSASEAFASVEYIMRDVPGGWLIRYMHHWGASLFFAAVYLHMFRGFFYGA--YKkpreLNWIIGVLLLLLTMAEAF 139
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 327239200 78 MGYVLPWGQMSFWGATVITNLLSAIPYLGQMLVQWVWGGFAVDNATLTRFYSFHFM-LPFIISAFVMIHLLFLHQTGSSN 156
Cdd:COG1290 140 TGYSLPWDQLSYWGARVITGLFGAIPVIGTWLVTWLFGGEFPGDATLNRFFALHVLlLPALLLALVVLHLWLLHRHGHNN 219
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 327239200 157 PLGMKM----NIDKIPFHPFFSLKDTVGFIILLSCLILLTLTYPyyLGDPDNFIPANPLVT 213
Cdd:COG1290 220 PPGPERkkteKVDGVPFHPYYTVKDGFGFFVFLGVFALLAFFFP--INPPPNYGPANPLAT 278
|
|
| CYTB |
MTH00086 |
cytochrome b; Provisional |
1-212 |
1.44e-74 |
|
cytochrome b; Provisional
Pssm-ID: 177151 [Multi-domain] Cd Length: 355 Bit Score: 229.06 E-value: 1.44e-74
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 327239200 1 SMHYCANIELAFNSVTHICRDVNYGWLLRTLHANGASFFFICLYLHVGRGMYYNSSNLKFTWMIGVLILFLVMATAFMGY 80
Cdd:MTH00086 41 AFYYTADSSMAFSSVQYIMYEVNFGWLFRIFHFNGASLFFIFLYLHIFKGLFMMSYRLKKVWISGLTIYLLVMMEAFMGY 120
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 327239200 81 VLPWGQMSFWGATVITNLLSAIPYLGQMLVQWVWGGFAVDNATLTRFYSFHFMLPFIISAFVMIHLLFLHQTGSSNPLGM 160
Cdd:MTH00086 121 VLVWAQMSFWAAVVITSLLSVIPIWGPSIVMWIWGGFGVSSATLKFFFVLHFLLPWGLLVLVLFHLIFLHSTGSTSSLYC 200
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|..
gi 327239200 161 KMNIDKIPFHPFFSLKDTVGFiILLSCLILLTLTYPYYLGDPDNFIPANPLV 212
Cdd:MTH00086 201 HGDYDKICFGPEYWNKDAYNI-IFWLVFIIFSLFYPFNLGDPEMFIEADPMM 251
|
|
| CYTB |
MTH00033 |
cytochrome b; Provisional |
1-213 |
3.97e-74 |
|
cytochrome b; Provisional
Pssm-ID: 133672 [Multi-domain] Cd Length: 383 Bit Score: 228.67 E-value: 3.97e-74
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 327239200 1 SMHYCANIELAFNSVTHICRDVNYGWLLRTLHANGASFFFICLYLHVGRGMYYNSSNLKFTWMIGVLILFLVMATAFMGY 80
Cdd:MTH00033 49 AMHYRSDVSLAFSSVAHIVRDVNYGWILRYVHANGASLFFICVYCHIGRGLYYGGYSRVLTWIVGVLIFFIMMLTAFIGY 128
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 327239200 81 VLPWGQMSFWGATVITNLLSAIPYLGQMLVQWVWGGFAVDNATLTRFYSFHFMLPFIISAFVMIHLLFLHQTGSSNPLGM 160
Cdd:MTH00033 129 VLPWGQMSFWAATVITNLVSAIPSVGGSIVEWIWGGFSVSNCTLNRFFSLHYLLPFVLVGLVLAHLLTLHEKGSNEPLGL 208
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*
gi 327239200 161 KMNIDKIPFHPFFSLKDTVGFIILLSCLILLTL--TYPYYLGDPDNFIPANPLVT 213
Cdd:MTH00033 209 VGLSDRTAFHVYFTIKDILGFLILFGVFVIIGIepRIETLLQDPENFIQANPLVT 263
|
|
| Cytochrome_b_N |
cd00284 |
Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit ... |
1-155 |
4.92e-68 |
|
Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit mitochondrial respiratory enzyme. Cytochrome b spans the mitochondrial membrane with 8 transmembrane helices (A-H) in eukaryotes. In plants and cyanobacteria, cytochrome b6 is analogous to eukaryote cytochrome b, containing two chains: helices A-D are encoded by the petB gene and helices E-H are encoded by the petD gene in these organisms. Cytochrome b/b6 contains two bound hemes and two ubiquinol/ubiquinone binding sites. The C-terminal portion of cytochrome b is described in a separate CD.
Pssm-ID: 238176 Cd Length: 200 Bit Score: 207.22 E-value: 4.92e-68
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 327239200 1 SMHYCANIELAFNSVTHICRDVNYGWLLRTLHANGASFFFICLYLHVGRGMYYNS--SNLKFTWMIGVLILFLVMATAFM 78
Cdd:cd00284 44 AMHYTPDVTLAFSSVQYIMRDVNFGWLIRSLHANGASMFFLMLYLHIFRGLYYGSykKPRELTWVIGVILLLLTMATAFM 123
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 327239200 79 GYVLPWGQMSFWGATVITNLLSAIPYLGQMLVQWVWGGFAVDNATLTRFYSFHFMLPFIISAFVMIHLLFLHQTGSS 155
Cdd:cd00284 124 GYVLPWGQMSYWGATVITNLFSAIPVIGITLVEWLWGGFSVDNATLTRFFALHFLLPFIIAVIVILHLLFLHEQGSS 200
|
|
| Cytochrome_B |
pfam00033 |
Cytochrome b/b6/petB; |
1-153 |
3.42e-63 |
|
Cytochrome b/b6/petB;
Pssm-ID: 306530 Cd Length: 189 Bit Score: 194.52 E-value: 3.42e-63
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 327239200 1 SMHYCANIELAFNSVTHICRDVNYGWLLRTLHANGASFFFICLYLHVGRGMYYN--SSNLKFTWMIGVLILFLVMATAFM 78
Cdd:pfam00033 35 AFYYTPDVTLAFLSVQYIMRDVNFGWLIRSVHANGASMFFLMLYLHIFRGLYYGgfSYPRELTWVIGVILLVLTMSTAFI 114
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 327239200 79 GYVLPWGQMSFWGATVITNLLSAIPYLGQMLVQWVWGGFAVDNATLTRFYSFHFMLPFIISAFVMIHLLFLHQTG 153
Cdd:pfam00033 115 GYVLPWGQMSYWGATVITNLLSAIPVIGDTLVEWIWGSFSVDQATLTRFFSLHFLLPFILAILMLLHLLFLHETG 189
|
|
| CYTB |
MTH00046 |
cytochrome b; Validated |
1-213 |
4.89e-49 |
|
cytochrome b; Validated
Pssm-ID: 177121 [Multi-domain] Cd Length: 355 Bit Score: 163.23 E-value: 4.89e-49
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 327239200 1 SMHYCANIELAFNSVTHICRDVNYGWLLRTLHANGASFFFICLYLHVGRGMYYNSSNLKFTWMIGVLILFLVMATAFMGY 80
Cdd:MTH00046 43 SLLYVADSLCSFFCVMSLSNDSFFTWCVRYWHIWGVNVLFILLFIHMGRALYYSSYSKKGVWNVGFILYLLVMVEAFLGY 122
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 327239200 81 VLPWGQMSFWGATVITNLLSAIPYLGQMLVQWVWGGFAVDNATLTRFYSFHFMLPFIISAFVMIHLLFLHQTGSSNPLGM 160
Cdd:MTH00046 123 ILPWHQMSYWAATVLTSIVDSVPIVGSLVYKYIVGGFSVTGVTLVRVFSVHICLGFVILGLMVVHLFYLHKSGSSNPLFS 202
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....
gi 327239200 161 KMNI-DKIPFHPFFSLKDTVGFIILLSCLILLTLTYPYYLGDPDNFIPANPLVT 213
Cdd:MTH00046 203 SNGYsDVVYFHSYFTVKDLFLFMVVCSLLVFWLFVSPDLVLDIEAYLEADPLVT 256
|
|
| Cytochrom_B_N_2 |
pfam13631 |
Cytochrome b(N-terminal)/b6/petB; |
37-202 |
3.66e-43 |
|
Cytochrome b(N-terminal)/b6/petB;
Pssm-ID: 433364 Cd Length: 169 Bit Score: 142.77 E-value: 3.66e-43
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 327239200 37 SFFFICLYLHVGRGMYYNS--SNLKFTWMIGVLILFLVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYLGQMLVQWVW 114
Cdd:pfam13631 1 YIFIAAIYVHMLRIFFTGAyrKPRELNWIIGVLLLLLTLGEGFTGYSLPDDLLSGTGLRIGLGILSSIPVVGTWLVWLLF 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 327239200 115 GGFAVDNATLTRFYSFHFM-LPFIISAFVMIHLLFLHQTGSSNPLGMKMNIDKIPFHPFFSLKDTVGFIILLSCLILLTL 193
Cdd:pfam13631 81 GGPFPGTATIPRFYALHILlLPGLILALIVAHLLLVEKHGQFPPPGTEKNVVGVPFWPVFAVKMLLFFLITVALLIGLAQ 160
|
....*....
gi 327239200 194 TYPYYLGDP 202
Cdd:pfam13631 161 INPIWLGGP 169
|
|
| PRK03735 |
PRK03735 |
cytochrome b6; Provisional |
1-158 |
9.02e-33 |
|
cytochrome b6; Provisional
Pssm-ID: 179639 Cd Length: 223 Bit Score: 117.51 E-value: 9.02e-33
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 327239200 1 SMHYCANIELAFNSVTHICRDVNYGWLLRTLHANGASFFFICLYLHVGRgMYYNSSNLK---FTWMIGVLILFLVMATAF 77
Cdd:PRK03735 63 TMYYVPDIKNAYESVYYLQNEVAFGWIVRGMHHWGASLVIVMMFLHTLR-VFFTGGYKKpreLNWVVGVLIFFVTVGLGF 141
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 327239200 78 MGYVLPWGQMSFWGATVITNLLSAIPYLGQMLVQWVWGGFAVDNATLTRFYSFH-FMLPFIISAFVMIHLLFLHQTGSSN 156
Cdd:PRK03735 142 TGYLLPWDQKAYFATKVGSQIAEAIPVIGDFIKTLLRGGEIVGAQTLTRFFAIHvFFLPWALAVLMLAHFLMIRKQGISG 221
|
..
gi 327239200 157 PL 158
Cdd:PRK03735 222 PL 223
|
|
| petB |
CHL00070 |
cytochrome b6 |
3-158 |
2.32e-30 |
|
cytochrome b6
Pssm-ID: 177009 Cd Length: 215 Bit Score: 111.35 E-value: 2.32e-30
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 327239200 3 HYCANIELAFNSVTHICRDVNYGWLLRTLHANGASFFFICLYLHVGRgmYYNSSNLK----FTWMIGVLILFLVMATAFM 78
Cdd:CHL00070 57 YYRPTVTEAFASVQYIMTEVNFGWLIRSVHRWSASMMVLMMILHVFR--VYLTGGFKkpreLTWVTGVVLAVLTVSFGVT 134
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 327239200 79 GYVLPWGQMSFWGATVITNLLSAIPYLGQMLVQWVWGGFAVDNATLTRFYSFH-FMLPFIISAFVMIHLLFLHQTGSSNP 157
Cdd:CHL00070 135 GYSLPWDQIGYWAVKIVTGVPEAIPVIGSPLVELLRGSVSVGQSTLTRFYSLHtFVLPLLTAVFMLMHFLMIRKQGISGP 214
|
.
gi 327239200 158 L 158
Cdd:CHL00070 215 L 215
|
|
| cytochrome_b_C |
cd00290 |
Cytochrome b(C-terminus)/b6/petD: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit ... |
156-213 |
4.47e-10 |
|
Cytochrome b(C-terminus)/b6/petD: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit mitochondrial respiratory enzyme. Cytochrome b spans the mitochondrial membrane with 8 transmembrane helices (A-H) in eukaryotes. In plants and cyanobacteria, cytochrome b6 is analogous to eukaryote cytochrome b, containing two chains: helices A-D are encoded by the petB gene and helices E-H are encoded by the petD gene in these organisms. Cytochrome b/b6 contains two bound hemes and two ubiquinol/ubiquinone binding sites. The C-terminal domain is involved in forming the ubiquinol/ubiquinone binding sites, but not the heme binding sites. The N-terminal portion of cytochrome b, which contains both heme binding sites, is described in a separate CD.
Pssm-ID: 238179 [Multi-domain] Cd Length: 147 Bit Score: 55.73 E-value: 4.47e-10
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|....*...
gi 327239200 156 NPLGMKMNIDKIPFHPFFSLKDTVGFIILLSCLILLTLTYPYYLGDPDNFIPANPLVT 213
Cdd:cd00290 1 NPLGLASDMDKISFHPYFWPKDLLGAFPILIIFMILVFYAPNLLGHPDNGIPANPLAT 58
|
|
| |
