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Conserved domains on  [gi|32698938|ref|NP_872359|]
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protein cornichon homolog 2 [Homo sapiens]

Protein Classification

cornichon family protein( domain architecture ID 10505577)

cornichon family protein that may play a role in the transport and maturation of TGFalpha family proteins

Graphical summary

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List of domain hits

Name Accession Description Interval E-value
Cornichon pfam03311
Cornichon protein;
7-151 1.69e-36

Cornichon protein;


:

Pssm-ID: 460883  Cd Length: 122  Bit Score: 122.22  E-value: 1.69e-36
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 32698938     7 AFCYMLTLVLCASLIFFVIWHIIAFDELRTDFKNPIDQgnpararerlknieriCCLLRKLVVPEYSIHGLFCLMFLCAA 86
Cdd:pfam03311   1 AILWILALLLTAALLFLSVYFIIALSDLECDYINPIDL----------------CSRLNPLVLPEYILHAFLTLLFLLSG 64
                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 32698938    87 EWVTLGLNIPLLFYHLWRYFHRPAdgsevMYDAVSIMNadILNYCQKESWCKLAFYLLSFFYYLY 151
Cdd:pfam03311  65 HWILFLLNLPLLAYNVYRYMRRQH-----LYDPTEIFR--QLSRHKKESFIKLGFYLLLFFIYLY 122
 
Name Accession Description Interval E-value
Cornichon pfam03311
Cornichon protein;
7-151 1.69e-36

Cornichon protein;


Pssm-ID: 460883  Cd Length: 122  Bit Score: 122.22  E-value: 1.69e-36
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 32698938     7 AFCYMLTLVLCASLIFFVIWHIIAFDELRTDFKNPIDQgnpararerlknieriCCLLRKLVVPEYSIHGLFCLMFLCAA 86
Cdd:pfam03311   1 AILWILALLLTAALLFLSVYFIIALSDLECDYINPIDL----------------CSRLNPLVLPEYILHAFLTLLFLLSG 64
                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 32698938    87 EWVTLGLNIPLLFYHLWRYFHRPAdgsevMYDAVSIMNadILNYCQKESWCKLAFYLLSFFYYLY 151
Cdd:pfam03311  65 HWILFLLNLPLLAYNVYRYMRRQH-----LYDPTEIFR--QLSRHKKESFIKLGFYLLLFFIYLY 122
 
Name Accession Description Interval E-value
Cornichon pfam03311
Cornichon protein;
7-151 1.69e-36

Cornichon protein;


Pssm-ID: 460883  Cd Length: 122  Bit Score: 122.22  E-value: 1.69e-36
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 32698938     7 AFCYMLTLVLCASLIFFVIWHIIAFDELRTDFKNPIDQgnpararerlknieriCCLLRKLVVPEYSIHGLFCLMFLCAA 86
Cdd:pfam03311   1 AILWILALLLTAALLFLSVYFIIALSDLECDYINPIDL----------------CSRLNPLVLPEYILHAFLTLLFLLSG 64
                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 32698938    87 EWVTLGLNIPLLFYHLWRYFHRPAdgsevMYDAVSIMNadILNYCQKESWCKLAFYLLSFFYYLY 151
Cdd:pfam03311  65 HWILFLLNLPLLAYNVYRYMRRQH-----LYDPTEIFR--QLSRHKKESFIKLGFYLLLFFIYLY 122
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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