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Conserved domains on  [gi|32698665|ref|NP_872447|]
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NADH dehydrogenase subunit 3 (mitochondrion) [Portunus trituberculatus]

Protein Classification

NADH dehydrogenase subunit 3( domain architecture ID 10009596)

NADH dehydrogenase subunit 3 is a core subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I) that couples the transfer of electrons from NADH to quinone with the translocation of protons across the membrane

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
ND3 MTH00161
NADH dehydrogenase subunit 3; Provisional
 3-115 5.89e-40

NADH dehydrogenase subunit 3; Provisional


:

Pssm-ID: 177217 [Multi-domain]  Cd Length: 113  Bit Score: 128.74  E-value: 5.89e-40
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 32698665    3 TLTLFSLLTIIVCYIVMTLASVISKKTITDREKNSPYECGFDPKGSARFPFSLRFFLIAVIFLIFDVEITLLLPLASIFN 82
Cdd:MTH00161   1 MILIILLIILLISIILMILASLLSKKSIMDREKSSPFECGFDPKSSARLPFSLRFFLIAIIFLIFDVEIALLLPMIFIFK 80

                         90       100       110
                 ....*....|....*....|....*....|...
gi 32698665   83 VTNLFSWLSTGTLFLLILLIGLYYEWAQGALEW 115
Cdd:MTH00161  81 TSNMMSWLITSSFFILILLLGLYYEWNQGALEW 113
 
Name Accession Description Interval E-value
ND3 MTH00161
NADH dehydrogenase subunit 3; Provisional
 3-115 5.89e-40

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 177217 [Multi-domain]  Cd Length: 113  Bit Score: 128.74  E-value: 5.89e-40
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 32698665    3 TLTLFSLLTIIVCYIVMTLASVISKKTITDREKNSPYECGFDPKGSARFPFSLRFFLIAVIFLIFDVEITLLLPLASIFN 82
Cdd:MTH00161   1 MILIILLIILLISIILMILASLLSKKSIMDREKSSPFECGFDPKSSARLPFSLRFFLIAIIFLIFDVEIALLLPMIFIFK 80

                         90       100       110
                 ....*....|....*....|....*....|...
gi 32698665   83 VTNLFSWLSTGTLFLLILLIGLYYEWAQGALEW 115
Cdd:MTH00161  81 TSNMMSWLITSSFFILILLLGLYYEWNQGALEW 113
NuoA COG0838
NADH:ubiquinone oxidoreductase subunit 3 (chain A) [Energy production and conversion]; NADH: ...
 2-115 7.21e-21

NADH:ubiquinone oxidoreductase subunit 3 (chain A) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 3 (chain A) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440600 [Multi-domain]  Cd Length: 117  Bit Score: 80.55  E-value: 7.21e-21
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 32698665   2 FTLTLFSLLTIIVCYIVMTLASVISKKTiTDREKNSPYECGFDPKGSARFPFSLRFFLIAVIFLIFDVEITLLLPLASIF 81
Cdd:COG0838   6 LPILIFLLVALGLALAMLLLSRLLGPKR-PNPEKLSPYECGIEPVGDARIRFSVRYYLVALLFVIFDVEVVFLFPWAVVF 84

                        90       100       110
                ....*....|....*....|....*....|....
gi 32698665  82 NVTNLFSWLStGTLFLLILLIGLYYEWAQGALEW 115
Cdd:COG0838  85 RELGWFGLIE-MLVFIAILLVGLIYAWKKGALEW 117
Oxidored_q4 pfam00507
NADH-ubiquinone/plastoquinone oxidoreductase, chain 3;
19-91 8.50e-21

NADH-ubiquinone/plastoquinone oxidoreductase, chain 3;


Pssm-ID: 459838 [Multi-domain]  Cd Length: 94  Bit Score: 79.78  E-value: 8.50e-21
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 32698665    19 MTLASVISKKTiTDREKNSPYECGFDPKGSARFPFSLRFFLIAVIFLIFDVEITLLLPLASIFNVTNLFSWLS 91
Cdd:pfam00507   1 LLLSRLLGPKR-PNPEKLSPYECGFDPVGDARLRFSVRFYLVAILFLIFDVEVVFLFPWAVSFRELGWFGFVE 72
 
Name Accession Description Interval E-value
ND3 MTH00161
NADH dehydrogenase subunit 3; Provisional
 3-115 5.89e-40

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 177217 [Multi-domain]  Cd Length: 113  Bit Score: 128.74  E-value: 5.89e-40
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 32698665    3 TLTLFSLLTIIVCYIVMTLASVISKKTITDREKNSPYECGFDPKGSARFPFSLRFFLIAVIFLIFDVEITLLLPLASIFN 82
Cdd:MTH00161   1 MILIILLIILLISIILMILASLLSKKSIMDREKSSPFECGFDPKSSARLPFSLRFFLIAIIFLIFDVEIALLLPMIFIFK 80

                         90       100       110
                 ....*....|....*....|....*....|...
gi 32698665   83 VTNLFSWLSTGTLFLLILLIGLYYEWAQGALEW 115
Cdd:MTH00161  81 TSNMMSWLITSSFFILILLLGLYYEWNQGALEW 113
ND3 MTH00148
NADH dehydrogenase subunit 3; Provisional
 1-117 1.05e-34

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 214433 [Multi-domain]  Cd Length: 117  Bit Score: 115.73  E-value: 1.05e-34
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 32698665    1 MFTLTLFSLLTIIVCYIVMTLASVISKKTITDREKNSPYECGFDPKGSARFPFSLRFFLIAVIFLIFDVEITLLLPLASI 80
Cdd:MTH00148   1 MLSILLSLLFALILSPVLLLLGLVLSKRSYSDREKSSPFECGFDPISSARSPFSLRFFLLAILFLVFDVEIVLLFPVLQS 80

                         90       100       110
                 ....*....|....*....|....*....|....*..
gi 32698665   81 FNVTNLFSWLSTGTLFLLILLIGLYYEWAQGALEWSK 117
Cdd:MTH00148  81 LGSSFSVWSLTSLFIFLLILILGLFHEWNEGSLDWVS 117
ND3 MTH00202
NADH dehydrogenase subunit 3; Provisional
 1-117 7.15e-28

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 214455 [Multi-domain]  Cd Length: 117  Bit Score: 98.53  E-value: 7.15e-28
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 32698665    1 MFTLTLFSLLTIIVCYIVMTLASVISKKTITDREKNSPYECGFDPKGSARFPFSLRFFLIAVIFLIFDVEITLLLPLASI 80
Cdd:MTH00202   1 MLLILFMSILSILISSLLFLVSWMLSFRSLMDREKSSPFECGFDPKESARLPFSMRFFLLAVIFLVFDIEIALLLPLPLV 80

                         90       100       110
                 ....*....|....*....|....*....|....*..
gi 32698665   81 FNVTNLFSWLSTGTLFLLILLIGLYYEWAQGALEWSK 117
Cdd:MTH00202  81 LKSSWSKGGLLGGTIFLLILIGGLIHEWKEGSLDWVK 117
ND3 MTH00136
NADH dehydrogenase subunit 3; Provisional
 32-115 3.22e-26

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 177194 [Multi-domain]  Cd Length: 116  Bit Score: 94.22  E-value: 3.22e-26
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 32698665   32 DREKNSPYECGFDPKGSARFPFSLRFFLIAVIFLIFDVEITLLLPL---ASIFNVTNLFSWLStgtLFLLILLIGLYYEW 108
Cdd:MTH00136  31 DHEKLSPYECGFDPLGSARLPFSLRFFLVAILFLLFDLEIALLLPLpwgDQLPSPLLTFFWAT---AVLILLTLGLIYEW 107


                 ....*..
gi 32698665  109 AQGALEW 115
Cdd:MTH00136 108 LQGGLEW 114
ND3 MTH00012
NADH dehydrogenase subunit 3; Validated
 1-116 5.54e-26

NADH dehydrogenase subunit 3; Validated


Pssm-ID: 164588 [Multi-domain]  Cd Length: 117  Bit Score: 93.77  E-value: 5.54e-26
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 32698665    1 MFTLTLFSLLTIIVCYIVMTLASVISKKTITDREKNSPYECGFDPKGSARFPFSLRFFLIAVIFLIFDVEITLLLPLASI 80
Cdd:MTH00012   1 MSLMMIPMMISLILPPLVLGAAWVLAARSTADREKTSPFECGFDPHKTARIPFSLRFFLLAIIFIVFDIEIVLLMPVPTI 80

                         90       100       110
                 ....*....|....*....|....*....|....*.
gi 32698665   81 FNVTNLFSWLSTGTLFLLILLIGLYYEWAQGALEWS 116
Cdd:MTH00012  81 LMTSTSKTVVYTSILFLLILVIGLIHEWREGSLDWS 116
ND3 MTH00113
NADH dehydrogenase subunit 3; Provisional
 1-115 3.22e-25

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 177175 [Multi-domain]  Cd Length: 114  Bit Score: 91.48  E-value: 3.22e-25
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 32698665    1 MFTLTLFSLLTIIvcyivMTLASVISKKTITDREKNSPYECGFDPKGSARFPFSLRFFLIAVIFLIFDVEITLLLPLASI 80
Cdd:MTH00113   4 ISMLTISLALSTI-----LTTLNFWLTQTKPDNEKLSPYECGFDPLGSARLPFSIRFFLVAILFLLFDLEIALLLPLPWA 78

                         90       100       110
                 ....*....|....*....|....*....|....*
gi 32698665   81 FNVTNLFSWLSTGTLFLLILLIGLYYEWAQGALEW 115
Cdd:MTH00113  79 INLTTPTTTLTWATIILTLLTLGLIYEWLQGGLEW 113
ND3 MTH00106
NADH dehydrogenase subunit 3; Provisional
 34-117 7.76e-25

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 177168 [Multi-domain]  Cd Length: 115  Bit Score: 90.38  E-value: 7.76e-25
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 32698665   34 EKNSPYECGFDPKGSARFPFSLRFFLIAVIFLIFDVEITLLLPLASIFNVTNLFSWLSTGTLFLLILLIGLYYEWAQGAL 113
Cdd:MTH00106  32 EKASPYECGFDPMGSARLPFSMKFFLVAITFLLFDLEIALLLPLPWASQTNNLNTMLTMALLLISLLALSLAYEWTQKGL 111


                 ....
gi 32698665  114 EWSK 117
Cdd:MTH00106 112 EWTE 115
ND3 MTH00042
NADH dehydrogenase subunit 3; Validated
 1-115 1.02e-24

NADH dehydrogenase subunit 3; Validated


Pssm-ID: 177117 [Multi-domain]  Cd Length: 116  Bit Score: 90.43  E-value: 1.02e-24
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 32698665    1 MFTLTLFSLLTIIVCYIVMTLASVISKKTItDREKNSPYECGFDPKGSARFPFSLRFFLIAVIFLIFDVEITLLLPLASI 80
Cdd:MTH00042   1 MTNLIFFLLIILILTSLLLLAGHFLPSRSP-DLEKSSPYECGFDPLNSARLPFSFRFFLVAILFLLFDLEIALLFPLPPA 79

                         90       100       110
                 ....*....|....*....|....*....|....*
gi 32698665   81 FNVTNLFSWLSTGTLFLLILLIGLYYEWAQGALEW 115
Cdd:MTH00042  80 TLITNPSTLLPISLIFLIILTIGLVYEWVNGGLEW 114
ND3 MTH00069
NADH dehydrogenase subunit 3; Provisional
 16-115 5.57e-24

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 177141 [Multi-domain]  Cd Length: 114  Bit Score: 88.51  E-value: 5.57e-24
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 32698665   16 YIVMTLASVISKKTIT----------DREKNSPYECGFDPKGSARFPFSLRFFLIAVIFLIFDVEITLLLPL---ASIFN 82
Cdd:MTH00069   3 MLMLLISTILSLILITisfwlplnnpDSEKLSPYECGFDPLGSARLPFSIRFFLVAILFLLFDLEIALLLPTpwaSQLNT 82

                         90       100       110
                 ....*....|....*....|....*....|...
gi 32698665   83 VTNLFSWlstGTLFLLILLIGLYYEWAQGALEW 115
Cdd:MTH00069  83 PTNTLFW---STLILILLTLGLIYEWIQGGLEW 112
NuoA COG0838
NADH:ubiquinone oxidoreductase subunit 3 (chain A) [Energy production and conversion]; NADH: ...
 2-115 7.21e-21

NADH:ubiquinone oxidoreductase subunit 3 (chain A) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 3 (chain A) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440600 [Multi-domain]  Cd Length: 117  Bit Score: 80.55  E-value: 7.21e-21
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 32698665   2 FTLTLFSLLTIIVCYIVMTLASVISKKTiTDREKNSPYECGFDPKGSARFPFSLRFFLIAVIFLIFDVEITLLLPLASIF 81
Cdd:COG0838   6 LPILIFLLVALGLALAMLLLSRLLGPKR-PNPEKLSPYECGIEPVGDARIRFSVRYYLVALLFVIFDVEVVFLFPWAVVF 84

                        90       100       110
                ....*....|....*....|....*....|....
gi 32698665  82 NVTNLFSWLStGTLFLLILLIGLYYEWAQGALEW 115
Cdd:COG0838  85 RELGWFGLIE-MLVFIAILLVGLIYAWKKGALEW 117
Oxidored_q4 pfam00507
NADH-ubiquinone/plastoquinone oxidoreductase, chain 3;
19-91 8.50e-21

NADH-ubiquinone/plastoquinone oxidoreductase, chain 3;


Pssm-ID: 459838 [Multi-domain]  Cd Length: 94  Bit Score: 79.78  E-value: 8.50e-21
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 32698665    19 MTLASVISKKTiTDREKNSPYECGFDPKGSARFPFSLRFFLIAVIFLIFDVEITLLLPLASIFNVTNLFSWLS 91
Cdd:pfam00507   1 LLLSRLLGPKR-PNPEKLSPYECGFDPVGDARLRFSVRFYLVAILFLIFDVEVVFLFPWAVSFRELGWFGFVE 72
ND3 MTH00203
NADH dehydrogenase subunit 3; Provisional
 1-115 9.32e-21

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 214456 [Multi-domain]  Cd Length: 112  Bit Score: 79.94  E-value: 9.32e-21
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 32698665    1 MFTLTLFSLLTIIVCYIVMTLASvISKKTITDREKNSPYECGFDPKGSARFPFSLRFFLIAVIFLIFDVEITLLLPLasI 80
Cdd:MTH00203   1 MNLIMLFFLIALLLSLILLFIAF-WLPKVNPDGEKLSPYECGFDPLGSARLPFSLQFFLVALSFLLFDLEIALLLPL--P 77

                         90       100       110
                 ....*....|....*....|....*....|....*
gi 32698665   81 FNVTNLFSWLSTGTLFLLILLIGLYYEWAQGALEW 115
Cdd:MTH00203  78 WSNQLSSLSLLLAFLFLILLTLGLIYEWLQGGLEW 112
PRK06602 PRK06602
NADH:ubiquinone oxidoreductase subunit A; Validated
 6-116 1.50e-18

NADH:ubiquinone oxidoreductase subunit A; Validated


Pssm-ID: 180638 [Multi-domain]  Cd Length: 121  Bit Score: 74.52  E-value: 1.50e-18
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 32698665    6 LFSLLTIIVCYIVMTLASVISKKTiTDREKNSPYECGFDPKGSARFPFSLRFFLIAVIFLIFDVEITLLLPLASIFNVTN 85
Cdd:PRK06602  13 IFLIVAIGLGILLLVAGKLLGPRA-PDREKNSPYESGFEAFGDARMKFDVRFYLVAILFVIFDLEAAFLFPWAVSFREIG 91

                         90       100       110
                 ....*....|....*....|....*....|.
gi 32698665   86 LFSWLStGTLFLLILLIGLYYEWAQGALEWS 116
Cdd:PRK06602  92 WLGFVE-AMIFILVLLVGLVYLWRKGALDWE 121
ND3 MTH00018
NADH dehydrogenase subunit 3; Validated
 6-115 7.78e-18

NADH dehydrogenase subunit 3; Validated


Pssm-ID: 164592 [Multi-domain]  Cd Length: 113  Bit Score: 72.79  E-value: 7.78e-18
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 32698665    6 LFSLLTIIVCYIVMTLASVISKKTITDREKNSPYECGFDPKGSARFPFSLRFFLIAVIFLIFDVEITLLLPLASIFNVTN 85
Cdd:MTH00018   4 FILLIFSVVLSALFSGASYFLGVKQPDREKVSAYECGFDPFGFPGRPFSIRFFLIGILFLIFDLEISFLFPWCVLYNQIA 83

                         90       100       110
                 ....*....|....*....|....*....|
gi 32698665   86 LFSWlSTGTLFLLILLIGLYYEWAQGALEW 115
Cdd:MTH00018  84 PFGF-WTMVGFLFILTLGLIYEWIKGGLEW 112
ND3 MTH00055
NADH dehydrogenase subunit 3; Provisional
 1-115 1.08e-17

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 177128 [Multi-domain]  Cd Length: 118  Bit Score: 72.43  E-value: 1.08e-17
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 32698665    1 MFTLTLFSlltiIVCYIVMTLASVISKKTITDREKNSPYECGFDPKGSARFPFSLRFFLIAVIFLIFDVEITLLLPLASI 80
Cdd:MTH00055   8 IFILLLFS----IGLSTVISGASYIVGVKQPDSEKVSVYECGFDPFESSRIPFSVRFFLVGILFLIFDLEISFLFPWCVV 83

                         90       100       110
                 ....*....|....*....|....*....|....*
gi 32698665   81 FNVTNLFSWLsTGTLFLLILLIGLYYEWAQGALEW 115
Cdd:MTH00055  84 YNQIGLFGFW-VMYLFLIILTIGLIYEWVKGGLEW 117
ND3 MTH00030
NADH dehydrogenase subunit 3; Provisional
 2-115 7.09e-16

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 164603 [Multi-domain]  Cd Length: 123  Bit Score: 68.04  E-value: 7.09e-16
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 32698665    2 FTLTLFSLLTIIVCYIVMTLASVISKKTITDREKNSPYECGFDPKGSARFPFSLRFFLIAVIFLIFDVEITLLLPLASIF 81
Cdd:MTH00030  10 FSTLLGVGIILLLVSISFTLGNSRIGLTKPDSEKSSIYECGFDPFGKIRTPFTIKFVLVGILFMIFDIEISFLFPWSIVF 89

                         90       100       110
                 ....*....|....*....|....*....|....
gi 32698665   82 NVTNLFSWLsTGTLFLLILLIGLYYEWAQGALEW 115
Cdd:MTH00030  90 NQLNLFSFW-IVYTFLIVLAIGLAYEWIKGGLEW 122
ndhC CHL00022
NADH dehydrogenase subunit 3
 12-116 1.60e-10

NADH dehydrogenase subunit 3


Pssm-ID: 176964 [Multi-domain]  Cd Length: 120  Bit Score: 53.84  E-value: 1.60e-10
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 32698665   12 IIVCYIVMTLASVISK---KTITDREKNSPYECGFDPKGSARFPFSLRFFLIAVIFLIFDVEITLLLPLASIFNVTNLFS 88
Cdd:CHL00022  14 LIISSLIPILAFLISGllaPISKGPEKLSSYESGIEPMGDAWLQFRIRYYMFALVFVVFDVETVFLYPWAMSFDVLGVSA 93

                         90       100
                 ....*....|....*....|....*...
gi 32698665   89 WLSTGTLFLLILLIGLYYeWAQGALEWS 116
Cdd:CHL00022  94 FIEALIFVLILIVGLVYA-WRKGALEWS 120
PRK07928 PRK07928
NADH dehydrogenase subunit A; Validated
 6-115 3.06e-10

NADH dehydrogenase subunit A; Validated


Pssm-ID: 181171 [Multi-domain]  Cd Length: 119  Bit Score: 53.14  E-value: 3.06e-10
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 32698665    6 LFSLLTIIVCYIV--MTLASVISKKTItDREKNSPYECGFDPK----GSARFPfsLRFFLIAVIFLIFDVEITLLLPLAS 79
Cdd:PRK07928   7 ILVLGALAAAFAVvsVVVASLVGPKRY-NRAKLEAYECGIEPTpqpaGGGRFP--VKYYLTAMLFIVFDIEIVFLYPWAV 83

                         90       100       110
                 ....*....|....*....|....*....|....*.
gi 32698665   80 IFNVTNLFSwLSTGTLFLLILLIGLYYEWAQGALEW 115
Cdd:PRK07928  84 SFDALGVFG-LVEMALFMLTVFVAYAYVWRRGGLEW 118
PRK08489 PRK08489
NAD(P)H-quinone oxidoreductase subunit 3;
9-115 2.54e-08

NAD(P)H-quinone oxidoreductase subunit 3;


Pssm-ID: 181448 [Multi-domain]  Cd Length: 129  Bit Score: 48.51  E-value: 2.54e-08
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 32698665    9 LLTIIVCYIVMTLASVISKKTI---TDREKNSPYECGFDPKGSARfPFSLRFFLIAVIFLIFDVEITLLLPLASIFNVTN 85
Cdd:PRK08489  18 VLTFVAFFLTTRLARFISRKLAqknTEKLKLAIYECGPEPVKQPN-RISSHFYIMALLFILFDVEIVFMFPWAVDFKLLG 96

                         90       100       110
                 ....*....|....*....|....*....|
gi 32698665   86 LFSWLSTGTLFLLILLIGLYYeWAQGALEW 115
Cdd:PRK08489  97 LFGLIEMLLFIVLLTIGFIYA-WKKGALEW 125
PRK07756 PRK07756
NADH-quinone oxidoreductase subunit A;
32-88 1.43e-07

NADH-quinone oxidoreductase subunit A;


Pssm-ID: 169084 [Multi-domain]  Cd Length: 122  Bit Score: 46.27  E-value: 1.43e-07
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|....*..
gi 32698665   32 DREKNSPYECGFDPKGSARFPFSLRFFLIAVIFLIFDVEITLLLPLASIFNVTNLFS 88
Cdd:PRK07756  39 SAAKATTYESGIEPFHDANIRFHARYYIFALLFVIFDVETLFLYPWAVAYDKLGLFA 95
ND3 MTH00060
NADH dehydrogenase subunit 3; Provisional
 2-75 1.05e-04

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 177132  Cd Length: 116  Bit Score: 38.73  E-value: 1.05e-04
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 32698665    2 FTLTLFSLLTIIVCYIVMTLASviSKKTITDREKNSPYECGFDPKGSARFPFSLRFFLIAVIFLIFDVEITLLL 75
Cdd:MTH00060   6 FVFFVFFLLFLVIYFFHSGLWN--NKIYSGGFSWVSSFECGFFSSGLSENCFSFTYFFLLVFFVIFDLEISLLL 77
ND3 MTH00092
NADH dehydrogenase subunit 3; Provisional
 1-75 1.85e-03

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 177155  Cd Length: 111  Bit Score: 35.25  E-value: 1.85e-03
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 32698665    1 MFTLTLFSLLTIIVCYIVMTLASVISKKTiTDREKNSPYECGFDPKGSARFPFSLRFFLIAVIFLIFDVEITLLL 75
Cdd:MTH00092   1 MLVLIFVFLFTLLLLMLLYLLNFFLSVKK-FDLLKVSSFECGFESVGKIQNSFSIHFFKIMLMFVIFDLEIVMFL 74
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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