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Conserved domains on  [gi|326653249|gb|AEA02557|]
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NADH dehydrogenase subunit 2, partial (mitochondrion) [Sphenomorphus diwata]

Protein Classification

NADH dehydrogenase subunit 2( domain architecture ID 11475913)

NADH dehydrogenase subunit 2 is the core subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I), which functions in the transfer of electrons from NADH to the respiratory chain

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
ND2 MTH00135
NADH dehydrogenase subunit 2; Provisional
 1-341 2.61e-133

NADH dehydrogenase subunit 2; Provisional


:

Pssm-ID: 177193 [Multi-domain]  Cd Length: 347  Bit Score: 383.39  E-value: 2.61e-133
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 326653249   1 MNPIMTSTIITSLALGTLITMSSTHWLLAWIGLELNTLAIIPIIAKQHHPRATEATTKYFLIQAASSATVLFSSTINAWY 80
Cdd:MTH00135   1 MNPYVLTILLFSLGLGTTLTFASSHWLLAWMGLEINTLAIIPLMAQHHHPRAVEATTKYFLTQATAAAMILFASTTNAWL 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 326653249  81 TGTWDIMQMTNPIASIMLTMALSMKLGLAPLHFWLPEVLQGSDLKTALIITTWQKLAPISLLYLTHQSlHPTTMLTMGLM 160
Cdd:MTH00135  81 TGQWDIQQMSHPLPTTMITLALALKIGLAPLHFWLPEVLQGLDLTTGLILSTWQKLAPFALILQIAPT-NPTLLITLGLT 159

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 326653249 161 STLVGGWGGLNQTQTRKIMAYSSIAHLGWMATILTLSPNLMLLNLLLYLMMTMSTFMLLILSSSKTIKDLTTSWAISPTT 240
Cdd:MTH00135 160 STLVGGWGGLNQTQLRKILAYSSIAHLGWMILVLQFSPSLTLLALLTYIIMTSSAFLTFKLNSSTKINTLATSWTKAPAL 239

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 326653249 241 TTMMLFLLMSMAGLPPLTGFMPKWLILQDLTTHSLTTTASLMAMSALLSLFFYLRLTYTTTLTLAPTTTQNKLKWRLQPK 320
Cdd:MTH00135 240 TALTPLILLSLGGLPPLTGFMPKWLILQELTKQDLPLTATLAALSALLSLYFYLRLSYAMTLTISPNTLNGTTPWRLPST 319

                        330       340
                 ....*....|....*....|.
gi 326653249 321 LKTTMLTTTTVMATLLLPITP 341
Cdd:MTH00135 320 QLTLPLAISTTATLMLLPLTP 340
 
Name Accession Description Interval E-value
ND2 MTH00135
NADH dehydrogenase subunit 2; Provisional
 1-341 2.61e-133

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177193 [Multi-domain]  Cd Length: 347  Bit Score: 383.39  E-value: 2.61e-133
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 326653249   1 MNPIMTSTIITSLALGTLITMSSTHWLLAWIGLELNTLAIIPIIAKQHHPRATEATTKYFLIQAASSATVLFSSTINAWY 80
Cdd:MTH00135   1 MNPYVLTILLFSLGLGTTLTFASSHWLLAWMGLEINTLAIIPLMAQHHHPRAVEATTKYFLTQATAAAMILFASTTNAWL 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 326653249  81 TGTWDIMQMTNPIASIMLTMALSMKLGLAPLHFWLPEVLQGSDLKTALIITTWQKLAPISLLYLTHQSlHPTTMLTMGLM 160
Cdd:MTH00135  81 TGQWDIQQMSHPLPTTMITLALALKIGLAPLHFWLPEVLQGLDLTTGLILSTWQKLAPFALILQIAPT-NPTLLITLGLT 159

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 326653249 161 STLVGGWGGLNQTQTRKIMAYSSIAHLGWMATILTLSPNLMLLNLLLYLMMTMSTFMLLILSSSKTIKDLTTSWAISPTT 240
Cdd:MTH00135 160 STLVGGWGGLNQTQLRKILAYSSIAHLGWMILVLQFSPSLTLLALLTYIIMTSSAFLTFKLNSSTKINTLATSWTKAPAL 239

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 326653249 241 TTMMLFLLMSMAGLPPLTGFMPKWLILQDLTTHSLTTTASLMAMSALLSLFFYLRLTYTTTLTLAPTTTQNKLKWRLQPK 320
Cdd:MTH00135 240 TALTPLILLSLGGLPPLTGFMPKWLILQELTKQDLPLTATLAALSALLSLYFYLRLSYAMTLTISPNTLNGTTPWRLPST 319

                        330       340
                 ....*....|....*....|.
gi 326653249 321 LKTTMLTTTTVMATLLLPITP 341
Cdd:MTH00135 320 QLTLPLAISTTATLMLLPLTP 340
NuoN COG1007
NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH: ...
 14-293 1.12e-28

NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 2 (chain N) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440631 [Multi-domain]  Cd Length: 473  Bit Score: 115.21  E-value: 1.12e-28
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 326653249  14 ALGTLITMSSTHWLLAWIGLELNTLAIIPIIA-KQHHPRATEATTKYFLIQAASSATVLFSSTINAWYTGTWDIMQMTNP 92
Cdd:COG1007  112 TLGMMLMASANDLLTLFLGLELLSLSLYVLVAfRRDDRRSSEAALKYFLLGALSSGFLLYGISLLYGATGSLNLAGIAAA 191

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 326653249  93 IAS------------IMLTMALSMKLGLAPLHFWLPEVLQGSDLKTALIITTWQKLAPISLLY-LTHQSLHP-----TTM 154
Cdd:COG1007  192 LAAgganspllllglVLVLAGLAFKLSAVPFHMWTPDVYEGAPTPVTAFLATAPKIAAFAALLrLLVEAFPGlaadwQLL 271

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 326653249 155 LT-MGLMSTLVGGWGGLNQTQTRKIMAYSSIAHLGWMAT-ILTLSPNLMLLNLLLYLMMTMST---FMLLILSSSK---- 225
Cdd:COG1007  272 LAvLAVLSMTVGNLAALAQTNVKRMLAYSSIAHAGYLLLgLAAGTPLGVSAALFYLLAYLFMNlgaFAVILLLSRKggea 351

                        250       260       270       280       290       300
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 326653249 226 -TIKDLTTSWAISPTTTTMMLFLLMSMAGLPPLTGFMPKWLILQDLTTHSLTTTASLMAMSALLSLFFY 293
Cdd:COG1007  352 eEIEDLAGLARRSPLLALAMTIFLLSLAGIPPTAGFFGKFYVFSAAVEAGLYWLAVIAVLNSVISAYYY 420
Proton_antipo_M pfam00361
Proton-conducting membrane transporter; This is a family of membrane transporters that ...
 23-268 5.65e-24

Proton-conducting membrane transporter; This is a family of membrane transporters that inlcudes some 7 of potentially 14-16 TM regions. In many instances the family forms part of complex I that catalyzes the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane, and in this context is a combination predominantly of subunits 2, 4, 5, 14, L, M and N. In many bacterial species these proteins are probable stand-alone transporters not coupled with oxidoreduction. The family in total represents homologs across the phyla.


Pssm-ID: 425636 [Multi-domain]  Cd Length: 291  Bit Score: 99.31  E-value: 5.65e-24
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 326653249   23 STHWLLAWIGLELNTLAIIPIIA-KQHHPRATEATTKYFLIQAASSATVLFSSTINAWYTGTWDIMQM-----------T 90
Cdd:pfam00361   1 ANDLLLMYLGWEAVLLPSYLLIGyWGKSPRSSEAGMKYFLLTLLGSSILLFGISLMYNYTGTLSFDELskaltgglnssG 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 326653249   91 NPIASIMLTMALSMKLGLAPLHFWLPEVLQGSDLK-TALIITTWQKLAPIsLLYLTHQSLHPTT------MLTMGLMSTL 163
Cdd:pfam00361  81 LLLLFLLILVGFLFKSAQVPFHTWLPDAYEGAPTPvSALLAATLVKAGGY-GLIRRSLLYLPSSpfiqqiLLILAIISML 159

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 326653249  164 VGGWGGLNQTQTRKIMAYSSIAHLGWMATILTLSPNLMLLNLLLYLMMTMSTFMLLIL---------SSSKTIKDLTTSW 234
Cdd:pfam00361 160 LGSLAALVQTDIKRLLAYSSISHMGYMLIALGAGTIYGIQAAIFHLLTHGLFSAGLFLcagsviyrrVHTRNIRDYGGLA 239

                         250       260       270
                  ....*....|....*....|....*....|....
gi 326653249  235 AISPTTTTMMLFLLMSMAGLPPLTGFMPKWLILQ 268
Cdd:pfam00361 240 KTMPILALVFLVAMLSLAGLPPTAGFLGKFLILA 273
NDH_I_N TIGR01770
proton-translocating NADH-quinone oxidoreductase, chain N; This model describes the 14th ...
 15-293 1.43e-21

proton-translocating NADH-quinone oxidoreductase, chain N; This model describes the 14th (based on E. coli) structural gene, N, of bacterial and chloroplast energy-transducing NADH (or NADPH) dehydrogenases. This model does not describe any subunit of the mitochondrial complex I (for which the subunit composition is very different), nor NADH dehydrogenases that are not coupled to ion transport. The Enzyme Commission designation 1.6.5.3, for NADH dehydrogenase (ubiquinone), is applied broadly, perhaps unfortunately, even if the quinone is menaquinone (Thermus, Mycobacterium) or plastoquinone (chloroplast). For chloroplast members, the name NADH-plastoquinone oxidoreductase is used for the complex and this protein is designated as subunit 2 or B. This model also includes a subunit of a related complex in the archaeal methanogen, Methanosarcina mazei, in which F420H2 replaces NADH and 2-hydroxyphenazine replaces the quinone. [Energy metabolism, Electron transport]


Pssm-ID: 273795 [Multi-domain]  Cd Length: 468  Bit Score: 95.01  E-value: 1.43e-21
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 326653249   15 LGTLITMSSTHWLLAWIGLELNTLAIIPIIA-KQHHPRATEATTKYFLIQAASSATVLFSSTINAWYTGTWDIMQMTNPI 93
Cdd:TIGR01770 113 LGIFLLVSSNDLLSIYLGLELQSLCFYVLAGlKRKSRFSTEAGLKYFILGAFSSGLLLFGISLIYGFTGSLNFEDLLLFL 192

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 326653249   94 ASIMLT------------MALSMKLGLAPLHFWLPEVLQGSDLKTALIITTWQKLAPI--------SLLYLTHQSLHPTT 153
Cdd:TIGR01770 193 SNGMLNisllllgivlilVGLLFKLSAVPFHMWVPDVYEGAPTPVTAFFSIVPKIAIFavflrlflYILFGFSEAWQIFL 272

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 326653249  154 MLtMGLMSTLVGGWGGLNQTQTRKIMAYSSIAHLGWMatILTLSPNLMLLNLLLYLMMTMSTFM-------LLILSSSK- 225
Cdd:TIGR01770 273 AI-IAFLSMLIGNFGALAQKKVKRLLAYSSISHVGYI--LIGLLAGTLEGIKAVLFYIFIYALMslgafgvLSLLRSYKd 349

                         250       260       270       280       290       300       310
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 326653249  226 ----TIKDLTTSWAISPTTTTMMLFLLMSMAGLPPLTGFMPKWLILQDLTTHSLTTTASLMAMSALLSLFFY 293
Cdd:TIGR01770 350 ewieYISDFAGLFKTNPILAILILIFMFSLAGIPPLAGFFGKFYVFFALLKSGLYWLAVIAVLTSVIGAFYY 421
 
Name Accession Description Interval E-value
ND2 MTH00135
NADH dehydrogenase subunit 2; Provisional
 1-341 2.61e-133

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177193 [Multi-domain]  Cd Length: 347  Bit Score: 383.39  E-value: 2.61e-133
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 326653249   1 MNPIMTSTIITSLALGTLITMSSTHWLLAWIGLELNTLAIIPIIAKQHHPRATEATTKYFLIQAASSATVLFSSTINAWY 80
Cdd:MTH00135   1 MNPYVLTILLFSLGLGTTLTFASSHWLLAWMGLEINTLAIIPLMAQHHHPRAVEATTKYFLTQATAAAMILFASTTNAWL 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 326653249  81 TGTWDIMQMTNPIASIMLTMALSMKLGLAPLHFWLPEVLQGSDLKTALIITTWQKLAPISLLYLTHQSlHPTTMLTMGLM 160
Cdd:MTH00135  81 TGQWDIQQMSHPLPTTMITLALALKIGLAPLHFWLPEVLQGLDLTTGLILSTWQKLAPFALILQIAPT-NPTLLITLGLT 159

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 326653249 161 STLVGGWGGLNQTQTRKIMAYSSIAHLGWMATILTLSPNLMLLNLLLYLMMTMSTFMLLILSSSKTIKDLTTSWAISPTT 240
Cdd:MTH00135 160 STLVGGWGGLNQTQLRKILAYSSIAHLGWMILVLQFSPSLTLLALLTYIIMTSSAFLTFKLNSSTKINTLATSWTKAPAL 239

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 326653249 241 TTMMLFLLMSMAGLPPLTGFMPKWLILQDLTTHSLTTTASLMAMSALLSLFFYLRLTYTTTLTLAPTTTQNKLKWRLQPK 320
Cdd:MTH00135 240 TALTPLILLSLGGLPPLTGFMPKWLILQELTKQDLPLTATLAALSALLSLYFYLRLSYAMTLTISPNTLNGTTPWRLPST 319

                        330       340
                 ....*....|....*....|.
gi 326653249 321 LKTTMLTTTTVMATLLLPITP 341
Cdd:MTH00135 320 QLTLPLAISTTATLMLLPLTP 340
ND2 MTH00112
NADH dehydrogenase subunit 2; Provisional
 1-342 1.65e-129

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214423 [Multi-domain]  Cd Length: 346  Bit Score: 373.77  E-value: 1.65e-129
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 326653249   1 MNPIMTSTIITSLALGTLITMSSTHWLLAWIGLELNTLAIIPIIAKQHHPRATEATTKYFLIQAASSATVLFSSTINAWY 80
Cdd:MTH00112   1 MNPHAKLIITTSLILGTIITISSNHWLMAWTGLEINTLAIIPLISKPHHPRATEAATKYFLTQAAASALILFSSTTNAWN 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 326653249  81 TGTWDIMQMTNPIASIMLTMALSMKLGLAPLHFWLPEVLQGSDLKTALIITTWQKLAPISLLYLTHQSLHPTTMLTMGLM 160
Cdd:MTH00112  81 TGQWDITQLTNPTSCTLLTLALAMKLGLAPFHFWLPEVLQGSTTTTALILSTWQKLAPLTLLLMTSNSLNPTLLLTLAIL 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 326653249 161 STLVGGWGGLNQTQTRKIMAYSSIAHLGWMATILTLSPNLMLLNLLLYLMMTMSTFMLLILSSSKTIKDLTTSWAISPTT 240
Cdd:MTH00112 161 STLIGGWGGLNQTQLRKIMAFSSIAHLGWMIAIITYSPKLTLLTFYIYILMTTPMFLTLNTTSTKTLKDMMTSWTKSPTL 240

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 326653249 241 TTMMLFLLMSMAGLPPLTGFMPKWLILQDLTTHSLTTTASLMAMSALLSLFFYLRLTYTTTLTLAPTTTQNKLKWRLQPk 320
Cdd:MTH00112 241 NTTLMLTLLSLAGLPPLTGFMPKWLILQELTKQNMTPTATIMAMLSLLSLFFYLRLTYISTITLPPNTTNMMMKWRTKP- 319

                        330       340
                 ....*....|....*....|..
gi 326653249 321 LKTTMLTTTTVMATLLLPITPM 342
Cdd:MTH00112 320 KKNTLTATLTTLSTLLLPLSPM 341
ND2 MTH00070
NADH dehydrogenase subunit 2; Provisional
 1-341 7.24e-123

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177142 [Multi-domain]  Cd Length: 346  Bit Score: 356.92  E-value: 7.24e-123
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 326653249   1 MNPIMTSTIITSLALGTLITMSSTHWLLAWIGLELNTLAIIPIIAKQHHPRATEATTKYFLIQAASSATVLFSSTINAWY 80
Cdd:MTH00070   1 MSPYALSILLSSLALGTMITLSSNHWFLAWMGLEINTLAIIPLMTKTHHPRATEAATKYFLTQASASALILFSSTINAWF 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 326653249  81 TGTWDIMQMTNPIASIMLTMALSMKLGLAPLHFWLPEVLQGSDLKTALIITTWQKLAPISLLYLTHQSLHPTTMLTMGLM 160
Cdd:MTH00070  81 TGEWTIMNMQTPLPTIMLTIALMMKLGIAPFHFWLPEVLQGLDLTTGLILSTWQKLAPMALLIQISHLLNSNLLIIMGLL 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 326653249 161 STLVGGWGGLNQTQTRKIMAYSSIAHLGWMATILTLSPNLMLLNLLLYLMMTMSTFMLLILSSSKTIKDLTTSWAISPTT 240
Cdd:MTH00070 161 STLIGGWGGLNQTQLRKIMAYSSIAHLGWMIIILTFSPHLTLLNLLIYLIMTSSMFLMLMNLNSTNINKLSSSWSKNPTL 240

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 326653249 241 TTMMLFLLMSMAGLPPLTGFMPKWLILQDLTTHSLTTTASLMAMSALLSLFFYLRLTYTTTLTLAPTTTQNKLKWRLqPK 320
Cdd:MTH00070 241 TSMMMLTLLSLGGLPPTTGFIPKWLILQELTKQNLTTLATLMALSALLSLFFYLRLSYAMSLTTSPNTSNSKLYWRF-KN 319

                        330       340
                 ....*....|....*....|.
gi 326653249 321 LKTTMLTTTTVMATLLLPITP 341
Cdd:MTH00070 320 KTNNLLSLTIILSLMLLPITP 340
ND2 MTH00105
NADH dehydrogenase subunit 2; Provisional
 1-342 3.82e-115

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177167 [Multi-domain]  Cd Length: 347  Bit Score: 337.20  E-value: 3.82e-115
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 326653249   1 MNPIMTSTIITSLALGTLITMSSTHWLLAWIGLELNTLAIIPIIAKQHHPRATEATTKYFLIQAASSATVLFSSTINAWY 80
Cdd:MTH00105   1 MNPLILIIIYLTLFLGTMITMISSHWLLAWIGLEMNMLAIIPILMKKHNPRSTEAATKYFLTQATASMLLMMAIIINLMY 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 326653249  81 TGTWDIMQMTNPIASIMLTMALSMKLGLAPLHFWLPEVLQGSDLKTALIITTWQKLAPISLLYLTHQSLHPTTMLTMGLM 160
Cdd:MTH00105  81 SGQWTITKLTNPTASTLMTIALAMKLGLAPFHFWVPEVTQGIPLSSGMILLTWQKLAPLSILYQISPSINPNLLLTLAIL 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 326653249 161 STLVGGWGGLNQTQTRKIMAYSSIAHLGWMATILTLSPNLMLLNLLLYLMMTMSTFMLLILSSSKTIKDLTTSWAISPTT 240
Cdd:MTH00105 161 SILIGGWGGLNQTQLRKILAYSSIAHMGWMTAILPYNPTLTLLNLLIYIIMTLTMFMLLMLNSSTTTLSLSHTWNKTPLM 240

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 326653249 241 TTMMLFLLMSMAGLPPLTGFMPKWLILQDLTTHSLTTTASLMAMSALLSLFFYLRLTYTTTLTLAPTTTQNKLKWRLQPK 320
Cdd:MTH00105 241 TSLILLTLLSLGGLPPLTGFMPKWMIIQELTKNNNIILPTLMAITALLNLYFYMRLIYSTSLTMFPSTNNMKMKWQFENT 320

                        330       340
                 ....*....|....*....|..
gi 326653249 321 LKTTMLTTTTVMATLLLPITPM 342
Cdd:MTH00105 321 KPMTLLPTLIILSTMLLPLTPM 342
ND2 MTH00200
NADH dehydrogenase subunit 2; Provisional
 1-316 3.63e-92

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177246 [Multi-domain]  Cd Length: 347  Bit Score: 278.78  E-value: 3.63e-92
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 326653249   1 MNPIMTSTIITSLALGTLITMSSTHWLLAWIGLELNTLAIIPIIAKQHHPRATEATTKYFLIQAASSATVLFSSTINAWY 80
Cdd:MTH00200   1 MSPLILPLFILSLGLGTLLTFSSSHWFLIWLGLEINTLAIIPLLIKQHHPRKVEATTKYFIIQATASALLLFGGLLNAWT 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 326653249  81 TGTWDIMQMTNPIASIMLTMALSMKLGLAPLHFWLPEVLQGSDLKTALIITTWQKLAPISLLYLTHQSLHPTTMLTMGLM 160
Cdd:MTH00200  81 SGQWGISEMLGPLSETLILLALALKLGLAPGHFWVPDVLQGLSLQTGLILSTWQKLAPFALLIQLAPALNSNILLLLGLL 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 326653249 161 STLVGGWGGLNQTQTRKIMAYSSIAHLGWMATILTLSPNLMLLNLLLYLMMTMSTFMLLILSSSKTIKDLTTSWAISPTT 240
Cdd:MTH00200 161 SVLVGGWGGLNQTQLRKILAYSSIAHLGWLLSGLVYSPNLALLYLLLYVIITLTVFLLLNLLNSTKINSLSSSKTKNPIL 240

                        250       260       270       280       290       300       310
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 326653249 241 TTMMLFLLMSMAGLPPLTGFMPKWLILQDLTTHSLTTTASLMAMSALLSLFFYLRLTYTTTLTLAPTTTQNKLKWR 316
Cdd:MTH00200 241 SMLLGLTLLSLGGLPPLTGFFPKWLILQELSKQGLFIYATILLLGSLLSLFFYLRLSYLTLLTLSPNQINMMSSWR 316
ND2 MTH00041
NADH dehydrogenase subunit 2; Validated
 1-293 2.09e-91

NADH dehydrogenase subunit 2; Validated


Pssm-ID: 177116 [Multi-domain]  Cd Length: 349  Bit Score: 276.81  E-value: 2.09e-91
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 326653249   1 MNPIMTSTIITSLALGTLITMSSTHWLLAWIGLELNTLAIIPIIAKQHHPRATEATTKYFLIQAASSATVLFSSTINAWY 80
Cdd:MTH00041   1 MNRNVLIFLITSIILGTIIVISSNHWFLIWLGLELNTLSIIPILSSNFSPRSVEATIKYFLVQAFSAAILLNGALIQAWL 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 326653249  81 TGTWDIMQMTNPIASIMLTMALSMKLGLAPLHFWLPEVLQGSDLKTALIITTWQKLAPISLLYLTHQSLHPTTMLTMGLM 160
Cdd:MTH00041  81 SGSWSINGPLNTLSSIIITLALALKLGLAPCHFWFPDVLQGLPFLQGLIIATWQKIAPLILLISISNLLNSNILILCGIL 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 326653249 161 STLVGGWGGLNQTQTRKIMAYSSIAHLGWMATILTLSPNLMLLNLLLYLMMTMSTFMLLILSSSKTIKDLTTSWAISPTT 240
Cdd:MTH00041 161 SVLVGGWGGLNQTQTRKILAFSSIAHLGWIIITSAYSPNASIIMFLIYIIINTSIFLIGNNFSLSTLSHLNKLSQLNPIS 240

                        250       260       270       280       290
                 ....*....|....*....|....*....|....*....|....*....|...
gi 326653249 241 TTMMLFLLMSMAGLPPLTGFMPKWLILQDLTTHSLTTTASLMAMSALLSLFFY 293
Cdd:MTH00041 241 AFLFILSILSLGGLPPLTGFLNKFISLYCLIQNNSILISIILIIGSLLSLFFY 293
ND2 MTH00144
NADH dehydrogenase subunit 2; Provisional
 13-293 4.79e-56

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214432 [Multi-domain]  Cd Length: 328  Bit Score: 185.47  E-value: 4.79e-56
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 326653249  13 LALGTLITMSSTHWLLAWIGLELNTLAIIPIIAKQHHPRATEATTKYFLIQAASSATVLFSSTINAWYTGTWDIMqmtnp 92
Cdd:MTH00144  13 MVMGTLLSLSSSHWLGVWVGLEINLIGFLPLLVYKKKSSESESVVKYFIIQSLGSSLLIFGSLIMYNLSFSWFSM----- 87

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 326653249  93 iasIMLTMALSMKLGLAPLHFWLPEVLQGSDLKTALIITTWQKLAPISLLYLTHQSLHP-TTMLTMGLMSTLVGGWGGLN 171
Cdd:MTH00144  88 ---SLLLLGLCLKLGLFPFHFWVPSVMAGLSWLSCFLLLTWQKVAPLFLLSNFLDLYWLaYLLCVISVLSALVGSIGGLN 164

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 326653249 172 QTQTRKIMAYSSIAHLGWMATILTLSPNLMLLNLLLYLMMTMSTFMLLILSSSKTIKDLTTSWAISPTTTTMMLFLLmSM 251
Cdd:MTH00144 165 QTQVRALLAYSSISHTGWMLVAILHGSWLMWMYFLIYIVSSGFLFFSLWSGDSGSMKDLGSLKPSYKTGLSIISLLL-SL 243

                        250       260       270       280
                 ....*....|....*....|....*....|....*....|..
gi 326653249 252 AGLPPLTGFMPKWLILQDLTTHSLTTTASLMAMSALLSLFFY 293
Cdd:MTH00144 244 GGLPPFLGFCSKLLVLISSMESSPLLLILLLLLGSLISLFFY 285
ND2 MTH00160
NADH dehydrogenase subunit 2; Provisional
 1-293 2.58e-55

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214442 [Multi-domain]  Cd Length: 335  Bit Score: 183.49  E-value: 2.58e-55
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 326653249   1 MNPIMTSTIITSLALGTLITMSSTHWLLAWIGLELNTLAIIPIIAKQHHPRATEATTKYFLIQAASSATVLFSSTINAWy 80
Cdd:MTH00160   2 MMNSSKLLFLSTLIMGTLISISSNSWFGAWMGLEINLLSFIPLISNKKNLMSSESSLKYFLIQALASIILLFSIILNML- 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 326653249  81 tgtwdIMQMTNPIASIMLTMALSMKLGLAPLHFWLPEVLQGSDLKTALIITTWQKLAPISLLYLTHQSlhpTTMLTMGLM 160
Cdd:MTH00160  81 -----NLMLFNNISSMLINSSLLLKLGAAPFHFWFPEVMEGLSWINCFILMTWQKIAPLILLSYLINN---NFIIIIIIL 152

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 326653249 161 STLVGGWGGLNQTQTRKIMAYSSIAHLGWMATILTLSPNLMLLNLLLYLMMTMSTFMLLILSSSKTIKDLTTSWAISPTT 240
Cdd:MTH00160 153 SAIIGAIGGLNQTSLRKILAYSSINHLGWMLSSMMISENLWLIYFLIYSIISLSIILLFNKFNIFFLNQLFNSNNKSKKI 232

                        250       260       270       280       290
                 ....*....|....*....|....*....|....*....|....*....|...
gi 326653249 241 TTMMLFLLMSMAGLPPLTGFMPKWLILQDLTTHSLTTTASLMAMSALLSLFFY 293
Cdd:MTH00160 233 KFLLFLNLLSLGGLPPFLGFLPKWIIIQLLISNNMFFLLFILIMSSLITLYFY 285
ND2 MTH00011
NADH dehydrogenase subunit 2; Validated
 11-293 2.26e-47

NADH dehydrogenase subunit 2; Validated


Pssm-ID: 164587 [Multi-domain]  Cd Length: 330  Bit Score: 163.03  E-value: 2.26e-47
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 326653249  11 TSLALGTLITMSSTHWLLAWIGLELNTLAIIPIIAKQHHPRATEATTKYFLIQAASSATVLFSSTInawytgTWDIMQMT 90
Cdd:MTH00011  13 STMTLGTLMALSSNNWLFLWMGMELNLLSFVPLMTSSKMNQESEAAVKYFLAQALGSGLLLLGMTM------MWSFPSLL 86

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 326653249  91 NPIASIMLTMALSMKLGLAPLHFWLPEVLQGSDLKTALIITTWQKLAPISLLYLTHQSLHPTTMLTMGLMSTLVGGWGGL 170
Cdd:MTH00011  87 KNITALMLLVSLMLKLGMAPCHFWFPSVMSSISWTLCLILSTWQKIAPLSILFFFTSHNILPMMTSMAAMSALAGGLGGM 166

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 326653249 171 NQTQTRKIMAYSSIAHLGWMATILTLSPNLMLLNLLLYLMMTMSTFMLLILSSSKTIKDLTTSWAISPTTTTMMLFLLMS 250
Cdd:MTH00011 167 NQTQLRPLLAYSSIGHMGWMTMISVFSPSMAILYFMTYIIITTPLMLLFAYLNAFSTKFNSKISSMSQTTSMSLFIMLLS 246

                        250       260       270       280
                 ....*....|....*....|....*....|....*....|...
gi 326653249 251 MAGLPPLTGFMPKWLILQDLTTHSLTTTASLMAMSALLSLFFY 293
Cdd:MTH00011 247 LGGLPPFTGFMPKLMAIETLTSNSMILILLVLIVGSLMNLFYY 289
ND2 MTH00197
NADH dehydrogenase subunit 2; Provisional
 12-293 5.10e-36

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177244 [Multi-domain]  Cd Length: 323  Bit Score: 132.87  E-value: 5.10e-36
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 326653249  12 SLALGTLITMSSTHWLLAWIGLELNTLAIIPIIAKQHHPRATEATTKYFLIQAASSATVLFSSTINAWYTgtwdimqMTN 91
Cdd:MTH00197   6 IIFGGVLFSLSSSNWFLVWIGMELNLIGFIPLLSQNKSITENEGAMKYFLFQEFGSALLLMGGSLSFSNL-------YLS 78

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 326653249  92 PIASIMLTMALSMKLGLAPLHFWLPEVLQGSDLKTALIITTWQKLAPisLLYLTHQSLHPTTMLTMGLMSTLVGGWGGLN 171
Cdd:MTH00197  79 LLSVVLVILGLLLKLGAFPFHFWVPSVMESLSWFNCFLLATWQKLAP--LLILAFNSSSFMGLLICSVLSSLIGGIGGMN 156

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 326653249 172 QTQTRKIMAYSSIAHLGWMATILTLSPNLMLLNLLLYLMMTMSTFMLLILSSSKTIKDLTTSWAISPTTTTMMLFLLMSM 251
Cdd:MTH00197 157 QSNIRQLLAYSSIGHTGWMLMSLVYSPSIFMLYYLIYFVIMFMLFLFLSKNNLSSLNQQYSNPESMSSNLVFLGLSFLSL 236

                        250       260       270       280
                 ....*....|....*....|....*....|....*....|..
gi 326653249 252 AGLPPLTGFMPKWLILQDLTTHSLTTTASLMAMSALLSLFFY 293
Cdd:MTH00197 237 GGLPPLSGFFLKWLILTSLLSSNISLITFMLILSTCFSLYYY 278
NuoN COG1007
NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH: ...
 14-293 1.12e-28

NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 2 (chain N) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440631 [Multi-domain]  Cd Length: 473  Bit Score: 115.21  E-value: 1.12e-28
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 326653249  14 ALGTLITMSSTHWLLAWIGLELNTLAIIPIIA-KQHHPRATEATTKYFLIQAASSATVLFSSTINAWYTGTWDIMQMTNP 92
Cdd:COG1007  112 TLGMMLMASANDLLTLFLGLELLSLSLYVLVAfRRDDRRSSEAALKYFLLGALSSGFLLYGISLLYGATGSLNLAGIAAA 191

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 326653249  93 IAS------------IMLTMALSMKLGLAPLHFWLPEVLQGSDLKTALIITTWQKLAPISLLY-LTHQSLHP-----TTM 154
Cdd:COG1007  192 LAAgganspllllglVLVLAGLAFKLSAVPFHMWTPDVYEGAPTPVTAFLATAPKIAAFAALLrLLVEAFPGlaadwQLL 271

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 326653249 155 LT-MGLMSTLVGGWGGLNQTQTRKIMAYSSIAHLGWMAT-ILTLSPNLMLLNLLLYLMMTMST---FMLLILSSSK---- 225
Cdd:COG1007  272 LAvLAVLSMTVGNLAALAQTNVKRMLAYSSIAHAGYLLLgLAAGTPLGVSAALFYLLAYLFMNlgaFAVILLLSRKggea 351

                        250       260       270       280       290       300
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 326653249 226 -TIKDLTTSWAISPTTTTMMLFLLMSMAGLPPLTGFMPKWLILQDLTTHSLTTTASLMAMSALLSLFFY 293
Cdd:COG1007  352 eEIEDLAGLARRSPLLALAMTIFLLSLAGIPPTAGFFGKFYVFSAAVEAGLYWLAVIAVLNSVISAYYY 420
PRK05777 PRK05777
NADH-quinone oxidoreductase subunit NuoN;
14-293 5.54e-27

NADH-quinone oxidoreductase subunit NuoN;


Pssm-ID: 235603 [Multi-domain]  Cd Length: 476  Bit Score: 110.68  E-value: 5.54e-27
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 326653249  14 ALGTLITMSSTHWLLAWIGLELNTLAIIPIIA-KQHHPRATEATTKYFLIQAASSATVLFSSTINAWYTGTWDIMQMTNP 92
Cdd:PRK05777 113 LLGMMVMVSANDLLTLFLGLELLSLPLYALAAlRRDRRRSLEAAIKYFVLGALASGFLLYGMSLLYGATGSLSFAGIAKA 192

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 326653249  93 IAS------------IMLTMALSMKLGLAPLHFWLPEVLQGSDLKTALIITTWQKLAPIS----LLYLTHQSLHPT---T 153
Cdd:PRK05777 193 LADgsgnsllllfglVFLLVGLAFKLSAVPFHMWTPDVYEGAPTPVTAFLATAPKIAAFAvllrLLVVAFGGLSEDwqqV 272

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 326653249 154 MLTMGLMSTLVGGWGGLNQTQTRKIMAYSSIAHLGWM-ATILTLSPNLMLLNLLLYLMMTMST---FMLLILSSSK---- 225
Cdd:PRK05777 273 LAIIAIASMLVGNLAALSQTNIKRLLAYSSIAHAGYLlVGLAAGTAEGYSAVLFYLLAYLFMTlgaFGVISLLRRKggea 352

                        250       260       270       280       290       300
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 326653249 226 -TIKDLTTSWAISPTTTTMMLFLLMSMAGLPPLTGFMPKWLILQDLTTHSLTTTASLMAMSALLSLFFY 293
Cdd:PRK05777 353 eSISDFAGLSKRSPLLAAVMTIFMLSLAGIPPTAGFWGKFYVFEAAVEAGLWWLAVIGVLNSAIGAFYY 421
ND2 MTH00196
NADH dehydrogenase subunit 2; Provisional
 13-267 2.67e-26

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214453 [Multi-domain]  Cd Length: 365  Bit Score: 107.42  E-value: 2.67e-26
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 326653249  13 LALGTLITMSSTHWLLAWIGLELNTLAIIPIIA-KQHHPRATEATTKYFLIQAASSATVLFS-------------STINA 78
Cdd:MTH00196   2 VALGILCLISSSNWLSVYLAIELQTLSLFILIAqNRGSGYSAEAGLKYFVLGALSSGLFLFGcallcgttgglhlSYINL 81

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 326653249  79 WYTGTWDIMQMTNPIASIMLTMALSMKLGLAPLHFWLPEVLQGSDLKTALIITTWQKLAPISLLYLThqSLHPTTMLTMG 158
Cdd:MTH00196  82 VLNSGQSFSSVSVPIGYLLIIVALLFKLSVAPFHMWAPDVYEGAPTKTTALLAIVPKLGIFSILVSI--GLNVNILLIGG 159

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 326653249 159 LMSTLVGGWGGLNQTQTRKIMAYSSIAHLGWMatILTLSPNLMLLNLLLYLMMTMSTFMLL----ILSSSKTIKDLTTSW 234
Cdd:MTH00196 160 LFSLFVGAIGALNQTKIKRLLAYSGIGHMGFV--LWGIEIGSFESIQASLVYLFIYIIMSIcvfsIILALNVYKNLIIEF 237

                        250       260       270
                 ....*....|....*....|....*....|....*..
gi 326653249 235 A----ISPTTTTMMLFLLMSMAGLPPLTGFMPKWLIL 267
Cdd:MTH00196 238 SglsrRLPILAITLALTFLSIAGIPPLVGFLGKWLIL 274
Proton_antipo_M pfam00361
Proton-conducting membrane transporter; This is a family of membrane transporters that ...
 23-268 5.65e-24

Proton-conducting membrane transporter; This is a family of membrane transporters that inlcudes some 7 of potentially 14-16 TM regions. In many instances the family forms part of complex I that catalyzes the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane, and in this context is a combination predominantly of subunits 2, 4, 5, 14, L, M and N. In many bacterial species these proteins are probable stand-alone transporters not coupled with oxidoreduction. The family in total represents homologs across the phyla.


Pssm-ID: 425636 [Multi-domain]  Cd Length: 291  Bit Score: 99.31  E-value: 5.65e-24
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 326653249   23 STHWLLAWIGLELNTLAIIPIIA-KQHHPRATEATTKYFLIQAASSATVLFSSTINAWYTGTWDIMQM-----------T 90
Cdd:pfam00361   1 ANDLLLMYLGWEAVLLPSYLLIGyWGKSPRSSEAGMKYFLLTLLGSSILLFGISLMYNYTGTLSFDELskaltgglnssG 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 326653249   91 NPIASIMLTMALSMKLGLAPLHFWLPEVLQGSDLK-TALIITTWQKLAPIsLLYLTHQSLHPTT------MLTMGLMSTL 163
Cdd:pfam00361  81 LLLLFLLILVGFLFKSAQVPFHTWLPDAYEGAPTPvSALLAATLVKAGGY-GLIRRSLLYLPSSpfiqqiLLILAIISML 159

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 326653249  164 VGGWGGLNQTQTRKIMAYSSIAHLGWMATILTLSPNLMLLNLLLYLMMTMSTFMLLIL---------SSSKTIKDLTTSW 234
Cdd:pfam00361 160 LGSLAALVQTDIKRLLAYSSISHMGYMLIALGAGTIYGIQAAIFHLLTHGLFSAGLFLcagsviyrrVHTRNIRDYGGLA 239

                         250       260       270
                  ....*....|....*....|....*....|....
gi 326653249  235 AISPTTTTMMLFLLMSMAGLPPLTGFMPKWLILQ 268
Cdd:pfam00361 240 KTMPILALVFLVAMLSLAGLPPTAGFLGKFLILA 273
ND2 MTH00199
NADH dehydrogenase subunit 2; Provisional
 9-267 3.15e-23

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177245 [Multi-domain]  Cd Length: 460  Bit Score: 99.71  E-value: 3.15e-23
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 326653249   9 IITSLALGTLITMSSTHWLLAWIGLELNTLAIIPIIA-KQHHPRATEATTKYFLIQAASSATVLFSSTINAWYTGTWDIM 87
Cdd:MTH00199 102 LILIVALGSLLLVSSINWLSIYLAIELQTLTLFILVAlKRDSAYSTEAGLKYFVLGAVSSGLFLFGCALLYGLTGETSIQ 181

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 326653249  88 Q----MTNPIASIMLTMALSMKLGLAPLHFWLPEVLQGSDLKTALIITTWQKLAPISLLYlthqSLHPTT--MLTMGLMS 161
Cdd:MTH00199 182 GinsiLTGDVGKILITISLLFKLSAAPFHMWAPDVYEGAPTITTALLATVPKIGVFSILV----QIGPVTnvVLICAVLS 257

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 326653249 162 TLVGGWGGLNQTQTRKIMAYSSIAHLGWMATILTLSPNLMLLNLLL-----YLMMTMSTFMLLILSSSKT-IKDLTTSWA 235
Cdd:MTH00199 258 IIYGAIGALNQTKIKRLLAYSGIGHMGFILFGVAIGSFESIQASLIymiiyVIMSICSFSIILSLKLTKGlIVEVSGLSR 337

                        250       260       270
                 ....*....|....*....|....*....|..
gi 326653249 236 ISPTTTTMMLFLLMSMAGLPPLTGFMPKWLIL 267
Cdd:MTH00199 338 KNPVIALTLALTFLSIAGIPPLAGFLSKWLIL 369
NDH_I_N TIGR01770
proton-translocating NADH-quinone oxidoreductase, chain N; This model describes the 14th ...
 15-293 1.43e-21

proton-translocating NADH-quinone oxidoreductase, chain N; This model describes the 14th (based on E. coli) structural gene, N, of bacterial and chloroplast energy-transducing NADH (or NADPH) dehydrogenases. This model does not describe any subunit of the mitochondrial complex I (for which the subunit composition is very different), nor NADH dehydrogenases that are not coupled to ion transport. The Enzyme Commission designation 1.6.5.3, for NADH dehydrogenase (ubiquinone), is applied broadly, perhaps unfortunately, even if the quinone is menaquinone (Thermus, Mycobacterium) or plastoquinone (chloroplast). For chloroplast members, the name NADH-plastoquinone oxidoreductase is used for the complex and this protein is designated as subunit 2 or B. This model also includes a subunit of a related complex in the archaeal methanogen, Methanosarcina mazei, in which F420H2 replaces NADH and 2-hydroxyphenazine replaces the quinone. [Energy metabolism, Electron transport]


Pssm-ID: 273795 [Multi-domain]  Cd Length: 468  Bit Score: 95.01  E-value: 1.43e-21
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 326653249   15 LGTLITMSSTHWLLAWIGLELNTLAIIPIIA-KQHHPRATEATTKYFLIQAASSATVLFSSTINAWYTGTWDIMQMTNPI 93
Cdd:TIGR01770 113 LGIFLLVSSNDLLSIYLGLELQSLCFYVLAGlKRKSRFSTEAGLKYFILGAFSSGLLLFGISLIYGFTGSLNFEDLLLFL 192

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 326653249   94 ASIMLT------------MALSMKLGLAPLHFWLPEVLQGSDLKTALIITTWQKLAPI--------SLLYLTHQSLHPTT 153
Cdd:TIGR01770 193 SNGMLNisllllgivlilVGLLFKLSAVPFHMWVPDVYEGAPTPVTAFFSIVPKIAIFavflrlflYILFGFSEAWQIFL 272

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 326653249  154 MLtMGLMSTLVGGWGGLNQTQTRKIMAYSSIAHLGWMatILTLSPNLMLLNLLLYLMMTMSTFM-------LLILSSSK- 225
Cdd:TIGR01770 273 AI-IAFLSMLIGNFGALAQKKVKRLLAYSSISHVGYI--LIGLLAGTLEGIKAVLFYIFIYALMslgafgvLSLLRSYKd 349

                         250       260       270       280       290       300       310
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 326653249  226 ----TIKDLTTSWAISPTTTTMMLFLLMSMAGLPPLTGFMPKWLILQDLTTHSLTTTASLMAMSALLSLFFY 293
Cdd:TIGR01770 350 ewieYISDFAGLFKTNPILAILILIFMFSLAGIPPLAGFFGKFYVFFALLKSGLYWLAVIAVLTSVIGAFYY 421
HyfB COG0651
Formate hydrogenlyase subunit 3/Multisubunit Na+/H+ antiporter, MnhD subunit [Energy ...
 30-291 3.93e-21

Formate hydrogenlyase subunit 3/Multisubunit Na+/H+ antiporter, MnhD subunit [Energy production and conversion, Inorganic ion transport and metabolism];


Pssm-ID: 440416 [Multi-domain]  Cd Length: 430  Bit Score: 93.29  E-value: 3.93e-21
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 326653249  30 WIGLELNTLAIIPIIAKQHHPRATEATTKYFLIQAASSATVLFSSTINAWYTGTWDIMQMTNPIASI----------MLT 99
Cdd:COG0651  133 FVFFEVMLLASYGLVALGGTKEALRAGLKYLILNLVGSALFLLGVGLLYGATGTLNMADLAARLAELdpglllaafaLLL 212

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 326653249 100 MALSMKLGLAPLHFWLPE-----------VLQGSDLKTAL--IITTWQKLAPISLLYLTHqslhpTTMLTMGLMSTLVGG 166
Cdd:COG0651  213 VGFGIKAALFPLHFWLPDaypaapspvsaLLSGLLTKVGVyaILRVLTLLFGADPALFLG-----TLLLVLGLLTMLVGA 287

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 326653249 167 WGGLNQTQTRKIMAYSSIAHLGWMatILTLSPNLMLLNLLLYLMMTMSTFM--LLILSS--------SKTIKDLTTSWAI 236
Cdd:COG0651  288 LGALAQRDLKRLLAYSSVSQIGYI--LLGLGLGTPLGLAGALFHLLNHALAkaLLFLAAgaieratgTRDLDKLGGLGKR 365

                        250       260       270       280       290
                 ....*....|....*....|....*....|....*....|....*....|....*
gi 326653249 237 SPTTTTMMLFLLMSMAGLPPLTGFMPKWLILQDLTTHSLTTTASLMAMSALLSLF 291
Cdd:COG0651  366 MPLTAAAFLIGALALAGLPPLSGFVSKWLLLQAALEAGAWLLAAVLLLSSLLTLA 420
ND2 MTH00198
NADH dehydrogenase subunit 2; Provisional
 9-290 1.69e-16

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214454 [Multi-domain]  Cd Length: 607  Bit Score: 80.29  E-value: 1.69e-16
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 326653249   9 IITSLALGTLITMSSTHWLLAWIGLELNTLAIIPIIAKQHHPRAT---------EATTKYFLIQAASSATVLFSSTINAW 79
Cdd:MTH00198 193 LVLIVGLGGLLLIESANWLTIYLALEFQTLALFILAGEGSQPGSHfpspgntppESGLKYWILGAMSSGFYLFGCALYFG 272

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 326653249  80 YTG--------------TWDIMQMTNPIASIMLTMALSMKLGLAPLHFWLPEVLQGSDLKTALIITTWQKLapISLLYLT 145
Cdd:MTH00198 273 FTGnegmlgtilsatleTTNIELRQGSLGYLFITVAILFKLAAAPFHMWTPDVYEGAPTPTTALIAIIPKF--TVYILLT 350

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 326653249 146 HQSLHPTTMLTMGLMSTLVGGWGGLNQTQTRKIMAYSSIAHLGWMATILTLSP-----NLMLLNLLLYLMMTMSTFMLLI 220
Cdd:MTH00198 351 SLVITSKLLLSVAIISLVVGAFGALNQTRIKRLLAYSGIGHIGFILIGVSAGTyeslqASWTYAVTYLVSALASFTVICT 430

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 326653249 221 LSSSKTIK--------------------DLTTSWAISPTTTTMMLFLLMSMAGLPPLTGFMPKWLILQDLTTHSLTTTAS 280
Cdd:MTH00198 431 LEEFGTRTptsrqrdgsfgnynlvrrlvDLTILSRGQPYIAFSLAIVFLSLAGIPPLLGFLGKWFILVGSIKIAFSSSLS 510

                        330
                 ....*....|
gi 326653249 281 LMAMSALLSL 290
Cdd:MTH00198 511 IYYLVALFAI 520
PRK08668 PRK08668
NADH dehydrogenase subunit M; Validated
 16-282 3.36e-09

NADH dehydrogenase subunit M; Validated


Pssm-ID: 236332 [Multi-domain]  Cd Length: 610  Bit Score: 58.08  E-value: 3.36e-09
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 326653249  16 GTLITMSSTHWLLAWIGLELNTLAIIPIIAKQHHpRATEATTKYFLIQAASSATVLFSSTINAWYTGTWDI-------MQ 88
Cdd:PRK08668 110 GVLGVFLANDLLTLYIFWEIMTFSSFMMVPMGKK-ESRKASLKYFVLSAIGAYAMLYAIFLIYAKTGTFDFadisqglIN 188

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 326653249  89 MTNPIASIMLTMALS----MKLGLAPLHFWLPE-----------VLQGSDLKT-ALIITTWQKLAPISLLYLTHQSLHPT 152
Cdd:PRK08668 189 DTSTGFALIVFLFLLafgvAKAGIFPLHVWAPDayseapqsfsaVLSGQLSKLgAYGFLLVLYVLPGTKLFSEFGTYRGV 268

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 326653249 153 TMLT-----MGLMSTLVGGWGGLNQTQTRKIMAYSSIAHLGWMATILTLSPNLMLLNLL-------LYLMMTMSTFMLLI 220
Cdd:PRK08668 269 PLFNyilawLGNISIIVGTLMAILQEDIKKLIAYSSVANGGYILVGLGLGTSLGFAGGLfhvfnhaLFKGLFFLIFAAVI 348

                        250       260       270       280       290       300
                 ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 326653249 221 LSSSKT-IKDLTTSWAISPTTTTMMLFLLMSMAGLPPLTGFMPKWLILQDLTTHSLTTTASLM 282
Cdd:PRK08668 349 YRTGTTkISEMGGLIEKMPFTFAMYLVAIISLAGIPPMSGFASKWLIFEALISKGMPITAFMA 411
ndhB CHL00049
NADH dehydrogenase subunit 2
 51-263 8.19e-09

NADH dehydrogenase subunit 2


Pssm-ID: 176990 [Multi-domain]  Cd Length: 494  Bit Score: 56.55  E-value: 8.19e-09
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 326653249  51 RATEATTKYFLIQAASSATVL--FSstinaWYTGT-------WDI------MQMTNP----IASIMLTMALSMKLGLAPL 111
Cdd:CHL00049 159 RSNEATMKYLLMGGASSSILVygFS-----WLYGLsggeielQEIvnglinTQMYNSpgisIALIFITVGIGFKLSLAPF 233

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 326653249 112 HFWLPEVLQGSDLKTALIITTWQKLAPISLL---------YLTHQSLHPTTMLtmGLMSTLVGGWGGLNQTQTRKIMAYS 182
Cdd:CHL00049 234 HQWTPDVYEGSPTPVVAFLSVTSKVAASALAtrifdipfyFSSNEWHLLLEIL--AILSMILGNLIAITQTSMKRMLAYS 311

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 326653249 183 SIAHLGW-MATILTLSPNL----MLLNLLLYLMMTMSTFMLLILSSSKT----IKDLTTSWAISPTTTTMMLFLLMSMAG 253
Cdd:CHL00049 312 SIGQIGYvIIGIIVGDSNDgyasMITYMLFYIFMNLGTFACIVLFGLRTgtdnIRDYAGLYTKDPFLALSLALCLLSLGG 391

                        250
                 ....*....|
gi 326653249 254 LPPLTGFMPK 263
Cdd:CHL00049 392 IPPLAGFFGK 401
PRK12650 PRK12650
DUF4040 family protein;
8-263 2.88e-07

DUF4040 family protein;


Pssm-ID: 237158 [Multi-domain]  Cd Length: 962  Bit Score: 52.35  E-value: 2.88e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 326653249   8 TIITSLALGTLITMSSTHWLLAWIGLELNTLAIIPIIAKQHhPRATEATTKYFLIQAASSATVLFSSTINAWYTGTWDIM 87
Cdd:PRK12650 114 LLMTAFMAAMLLLVLADDVVVLFVAWELVSLASFFLIARSG-SGGEAGSIRTLILTFFGGLTLLAAVAIAATQTGTTSLS 192

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 326653249  88 QM------------TNPIAsIMLTMALSMKLGLAPLHFWLPEVLQGSDLKTALIITTWQKLAPISLLYLTHQSLHPTT-- 153
Cdd:PRK12650 193 GIlhsdvwaekpglTTVVA-VLIAVAAFTKSAQFPFHFWLPEAMAAITPVSAFLHAAAVVKAGIYLLLRFSPVFHDVAvw 271

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 326653249 154 ---MLTMGLMSTLVGGWGGLNQTQTRKIMAYSSIAHLGWM-ATILTLSPNLMLLNLLLYLMMT---MSTFMLLIL----S 222
Cdd:PRK12650 272 nwlLIIVGMITALMGAVFAVQKTDLKKLTAYSTVSQLGWIvATIGVGTPFALTAAVVHTLAHAlfkSSLFMLIGVvdhqA 351

                        250       260       270       280
                 ....*....|....*....|....*....|....*....|.
gi 326653249 223 SSKTIKDLTTSWAISPTTTTMMLFLLMSMAGLPPLTGFMPK 263
Cdd:PRK12650 352 GTRDIRRLGSLWRRMPFTFVSVTIAALSMAAVPPLFGFVSK 392
PRK12667 PRK12667
putative monovalent cation/H+ antiporter subunit D; Reviewed
 91-293 7.29e-07

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 237167 [Multi-domain]  Cd Length: 520  Bit Score: 50.74  E-value: 7.29e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 326653249  91 NPIASIMLTMALSM-----KLGLAPLHFWLPEV-----------LQGSDLKT---ALIITTWQKLAPISLLYLTHQSLHP 151
Cdd:PRK12667 217 NPPLALGVALALALwaftiKAAIFPNHFWLPDAhpaapspvsamLSGLVVNVgayAIIRFLYTIFGISPSLIDFRAALSP 296

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 326653249 152 TTMLTmGLMSTLVGGWGGLNQTQTRKIMAYSSIAHLGWMATILTLSPNLMLLNLLLYLMMTMSTFMLLILSS-------- 223
Cdd:PRK12667 297 ILIIL-GAVSAIIGALMMVVQKDVKRLLAYSTISHMGYIFMGIGIGTQLGLAAALFHIINHAIAKSLLFLASgvfihaag 375

                        170       180       190       200       210       220       230
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 326653249 224 SKTIKDLTTSWAISPTTTTMMLFLLMSMAGLPPLTGFMPKWLILQDLTTHSLTTTASLMAMSALLSLFFY 293
Cdd:PRK12667 376 TRDIDELAGLGRKMPIASFAFLIGALSLVGIPPLNGFFSKLLLFNALLESGFYLPALVLLIASAISLVGY 445
PRK06458 PRK06458
hydrogenase 4 subunit F; Validated
 13-268 4.29e-06

hydrogenase 4 subunit F; Validated


Pssm-ID: 235805 [Multi-domain]  Cd Length: 490  Bit Score: 48.39  E-value: 4.29e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 326653249  13 LALGTLITMSSTHWLLAWIGLELNTLAIIPIIAKQHHPRATEATTKYFLIQAASSATVLFSsTINAWYT------GTWDI 86
Cdd:PRK06458 117 FLFTMLLALTSNNLGLMWVAIEATTLSSALLVGIYRTRASLEAAWKYIIICSVGVAFALFG-TILVYANaatvmgDGEMA 195

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 326653249  87 MQMTNPIA------SIMLTMALSM-------KLGLAPLHFWLPE-----------VLQGSDLKTALiittwqkLAPISLL 142
Cdd:PRK06458 196 ILWTELLKhaslldPTLMKLAFVFlligfgtKVGLFPMHAWLPDahseapspvsaLLSGVLLNVAL-------YAVLRYY 268

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 326653249 143 YLTHQSLHP----TTMLTMGLMSTLVGGWGGLNQTQTRKIMAYSSIAHLGWMATILTLSPNLMLLNLLLYLMMTMSTFML 218
Cdd:PRK06458 269 ILIDAAIGSdfpgRLLLIFGLLSVLVAAFFLLRQRDIKRLFAYSSIEHMGLIAFALGIGGPLGIFAALLHMLNHSLTKSA 348

                        250       260       270       280       290
                 ....*....|....*....|....*....|....*....|....*....|....*...
gi 326653249 219 LILSS--------SKTIKDLTTSWAISPTTTTMMLFLLMSMAGLPPLTGFMPKWLILQ 268
Cdd:PRK06458 349 IFFASgnvlqkygTRDINVIRGLLKVSPLTGWGLMLGALAIAGMPPFGVFISEFLILT 406
ND5 MTH00032
NADH dehydrogenase subunit 5; Provisional
 111-268 9.73e-06

NADH dehydrogenase subunit 5; Provisional


Pssm-ID: 214407 [Multi-domain]  Cd Length: 669  Bit Score: 47.26  E-value: 9.73e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 326653249 111 LHFWLPEVLQGSDLKTALIITTWQKLAPISLLYLTHQSLH--PTTMLTM---GLMSTLVGGWGGLNQTQTRKIMAYSSIA 185
Cdd:MTH00032 244 LHTWLPDAMEGPTPVSALIHAATMVTAGVFLMIRSFPLFEkaPLTLLIItifGALTAFFAATVGLVQNDLKKVIAYSTCS 323

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 326653249 186 HLGWMATILTLSPNLMLLNLLLYLMMTMSTfmLLILSSSKTIKDLTTSWA----------ISPTTTTMMLFLLMSMAGLP 255
Cdd:MTH00032 324 QLGYMVLIIGIEGSHNVGLFHLVNHAFFKA--LLFLSAGSVIHSTTVDEQdmrkmgglihSIPFTYTMMLIGSFSIMGLP 401

                        170
                 ....*....|...
gi 326653249 256 PLTGFMPKWLILQ 268
Cdd:MTH00032 402 YLTGFYSKDLILE 414
PRK08376 PRK08376
putative monovalent cation/H+ antiporter subunit D; Reviewed
 8-266 1.10e-05

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 236252 [Multi-domain]  Cd Length: 521  Bit Score: 47.01  E-value: 1.10e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 326653249   8 TIITSLALGTLITMSSTHWLLAWIGLELNTLAIIPIIAKQHH-PRATEATTKYFLIQAASSATVLFS--------STINA 78
Cdd:PRK08376 125 TLILLLELGMLGMAITGDLFNFFVFLEIMSIASYALVAFRNDtWEAIEAGIKYMFVGSLASSMVLLGiallygqyGTLNM 204

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 326653249  79 WYTGTWDIMQMT--NPIASIMLTMALSMKLGLAPLHFWLPEVLQG--SDLKTALIITTWQKLAPIS--LLYLTHQSLHPT 152
Cdd:PRK08376 205 AYLAVKMSENPTvvAKIALALFIAGLAMKSGAVPVHMWLPDAYPAapSSISAMLLVIKQAGLYALArvLFSIYGPAINLA 284

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 326653249 153 T----MLTMGLMSTLVGGWGGLNQTQTRKIMAYSSIAHLGWM-----ATILTL-SPNLMLLNLLLYLMMTMSTF------ 216
Cdd:PRK08376 285 TvgwvIIILGCLTMFVGVAMAVVQKDVKRLLAYHSVSQIGYMllglgVGLAALgDPAMASYGEIALAGGIYHIVnhalyk 364

                        250       260       270       280       290
                 ....*....|....*....|....*....|....*....|....*....|....*...
gi 326653249 217 MLLILSSSKTIKDLTTS--------WAISPTTTTMMLFLLMSMAGLPPLTGFMPKWLI 266
Cdd:PRK08376 365 ALLFLTAGAVIYETGTRnlnelgglARTMPKTTIAFLIGAAAIVGLPPFNGFASKWLI 422
NuoM COG1008
NADH:ubiquinone oxidoreductase subunit 4 (chain M) [Energy production and conversion]; NADH: ...
 38-267 1.15e-05

NADH:ubiquinone oxidoreductase subunit 4 (chain M) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 4 (chain M) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440632 [Multi-domain]  Cd Length: 488  Bit Score: 47.00  E-value: 1.15e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 326653249  38 LAIIP---IIAKQHHPRATEATTKYFLIQAASSATVLFSSTINAWYTGTW-----DIMQMTNPIAS-----IMLTMALSM 104
Cdd:COG1008  142 LMLIPmyfLIGIWGGERRIYAAIKFFLYTLAGSLLMLVAILALYFLAGALtfdiaELAAAPLPLTAqlllfLAFFIAFAV 221

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 326653249 105 KLGLAPLHFWLPE-----------VLQGSDLKTA----------LIITTWQKLAPIsllylthqslhpttMLTMGLMSTL 163
Cdd:COG1008  222 KVPMFPFHTWLPDahveaptagsvLLAGVLLKMGgygllrfalpLFPEASAYFAPL--------------LAALGVIGII 287

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 326653249 164 VGGWGGLNQTQTRKIMAYSSIAHLGWMAT-ILTLSPNLMLLNLLLYLMMTMSTFMLLILSS-------SKTIKDLTTSWA 235
Cdd:COG1008  288 YGALVALAQTDLKRLIAYSSVSHMGFVLLgIFALNPLGLQGAVLQMVSHGLITAALFLLVGvlydrthTRDIADLGGLAK 367

                        250       260       270
                 ....*....|....*....|....*....|..
gi 326653249 236 ISPTTTTMMLFLLMSMAGLPPLTGFMPKWLIL 267
Cdd:COG1008  368 RMPVLAALFLLAALASLGLPGTSGFVGEFLVL 399
NDH_I_M TIGR01972
proton-translocating NADH-quinone oxidoreductase, chain M; This model describes the 13th ...
 55-268 2.96e-05

proton-translocating NADH-quinone oxidoreductase, chain M; This model describes the 13th (based on E. coli) structural gene, M, of bacterial NADH dehydrogenase I, as well as chain 4 of the corresponding mitochondrial complex I and of the chloroplast NAD(P)H dehydrogenase complex. [Energy metabolism, Electron transport]


Pssm-ID: 273903 [Multi-domain]  Cd Length: 481  Bit Score: 45.70  E-value: 2.96e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 326653249   55 ATTKYFLIQAASSATVLFSSTINAWYTG-TWDIMQMTN-PIAS-------IMLTMALSMKLGLAPLHFWLPEV-LQGSDL 124
Cdd:TIGR01972 157 AAMKFFLYTLAGSLLMLLAILGLYFLGGgTFDLLELLNlPLPFgvqtwlfLAFFIAFAVKVPLFPLHTWLPDAhVEAPTA 236

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 326653249  125 KTALIITTWQKLAPISLLYL-------THQSLHPTtMLTMGLMSTLVGGWGGLNQTQTRKIMAYSSIAHLGWMAT-ILTL 196
Cdd:TIGR01972 237 GSVILAGVLLKMGTYGFLRFnlplfpdASLYFAPV-LAALGVIAIIYGALIALAQTDIKRLIAYSSISHMGFVLLgIFSF 315

                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 326653249  197 SPNLMLLNLLLYLMMTMSTFMLLILS-------SSKTIKDLTTSWAISPTTTTMMLFLLMSMAGLPPLTGFMPKWLILQ 268
Cdd:TIGR01972 316 NELGISGAVFQMISHGLITAALFLLVgvlyeraHTRDIAKYGGLANKMPVLAAFFMLFAMASLGLPGTSGFVGEFLILL 394
PRK02504 PRK02504
NAD(P)H-quinone oxidoreductase subunit N;
50-263 3.52e-05

NAD(P)H-quinone oxidoreductase subunit N;


Pssm-ID: 235044 [Multi-domain]  Cd Length: 513  Bit Score: 45.43  E-value: 3.52e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 326653249  50 PRATEATTKYFLIQAASSATVLFSSTINAWYTG--------TWDIMQMTNPIASIMLTMAL---SMKLGLAPLHFWLPEV 118
Cdd:PRK02504 157 PRSNEAALKYLLIGAASSAIFLYGSSLLYGLSGgstqlsaiALALITSPSLGLALALVFVIagiAFKISAVPFHQWTPDV 236

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 326653249 119 LQGSDLKTALIITTWQKLA----PISLLYLTHQSLHPTTML---TMGLMSTLVGGWGGLNQTQTRKIMAYSSIAHLGWMA 191
Cdd:PRK02504 237 YEGSPTPVVAFLSVGSKAAgfalAIRLLVTAFPSFDEQWKLlftALAILSMVLGNVVALAQTSMKRMLAYSSIGQAGFVM 316

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 326653249 192 TILTLSPN----LMLLNLLLYLMMTMSTFMLLILSSSKTIKDLTTSWA----ISPTTTTMMLFLLMSMAGLPPLTGFMPK 263
Cdd:PRK02504 317 IGLVAGTEagyaSMVFYLLAYLFMNLGAFACVILFSLRTGTDQISDYAglyqKDPLLTLGLSLCLLSLGGIPPLAGFFGK 396
PRK08375 PRK08375
putative monovalent cation/H+ antiporter subunit D; Reviewed
 93-291 3.90e-05

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 236251 [Multi-domain]  Cd Length: 487  Bit Score: 45.26  E-value: 3.90e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 326653249  93 IASIMLTMALSMKLGLAPLHFWLPEVLQG-SDLKTALIITTWQKLA--PISLLYLT--------HQSLHPTTMLTMgLMS 161
Cdd:PRK08375 203 TAFGFVLLALALKAAVFPLHTWLPRAYPAaPPVVTALLSGLVTKVAvyALIRIYFTvfggdfrfALGLGWLLAVLA-LLS 281

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 326653249 162 TLVGGWGGLNQTQTRKIMAYSSIAHLGWMatILTLSPNLMLLNLLLYLMMTMSTFML--LILSS--------SKTIKDLT 231
Cdd:PRK08375 282 MLVGSLAALGQDDVKRVLAYSTVSQMGYI--LLGLALLTPLALAAGLLHLLHHALMKgaLFLAAgaievtygTRRLSELS 359

                        170       180       190       200       210       220
                 ....*....|....*....|....*....|....*....|....*....|....*....|
gi 326653249 232 TSWAISPTTTTMMLFLLMSMAGLPPLTGFMPKWLILQDLTTHSLTTTASLMAMSALLSLF 291
Cdd:PRK08375 360 GLGRRMPLTAAAFAVASLSLIGVPPTSGFVSKWYLVVGAVEAGQWLVLAVLLASSLLALL 419
ND5 MTH00020
NADH dehydrogenase subunit 5; Reviewed
 100-292 1.88e-04

NADH dehydrogenase subunit 5; Reviewed


Pssm-ID: 214400 [Multi-domain]  Cd Length: 610  Bit Score: 43.14  E-value: 1.88e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 326653249 100 MALSMKLGLaplHFWLPEVLQGSDLKTALIITTWQKLAPISLL-----YLTHQSLHPTTMLTMGLMSTLVGGWGGLNQTQ 174
Cdd:MTH00020 221 VGKSAQLGL---HTWLPDAMEGPTPVSALIHAATMVTAGVFLLirsspLFEQAPLALIIVTIVGSLTVFFAATVGLVQND 297

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 326653249 175 TRKIMAYSSIAHLGWMATILTLSPNLMLLNLLLYLMMTMStfmLLILSSSKTI------KDLTTSWAIS---PTTTTMML 245
Cdd:MTH00020 298 LKKVIAYSTCSQLGYMVVACGLSHYSISLFHLMNHAFFKA---LLFLSAGSVIhalsdeQDMRKMGGLIsflPLTYIFFL 374

                        170       180       190       200
                 ....*....|....*....|....*....|....*....|....*...
gi 326653249 246 FLLMSMAGLPPLTGFMPKWLILQ-DLTTHSLTTTASLMAMSALLSLFF 292
Cdd:MTH00020 375 IGSLSLMGFPYLTGFYSKDLILElAFGQYYLIFAYWLGCFSALLTAFY 422
NuoL COG1009
Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ ...
 78-267 2.45e-04

Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ antiporter, MnhA subunit [Energy production and conversion]; Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ antiporter, MnhA subunit is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440633 [Multi-domain]  Cd Length: 608  Bit Score: 42.83  E-value: 2.45e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 326653249  78 AWYTGTWDIMQMTNPIASIM----LTMALSM-------KLGLAPLHFWLPE----------VLQGSDLKTA---LIIttw 133
Cdd:COG1009  186 GAIAGTLNFSELLAAAPTILssplLTLILLLlllgafgKSAQFPLHFWLPDamegptpvsaLLHAATMVKAgvyLLA--- 262

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 326653249 134 qKLAPIslLYLTHQSLhpTTMLTMGLMSTLVGGWGGLNQTQTRKIMAYSSIAHLGWMATILTLSpnlmllnlllylMMTM 213
Cdd:COG1009  263 -RLSPL--FALSPVWL--TVVAIIGAITALFAALIALAQTDIKRVLAYSTVSQLGYMFLALGVG------------AYVA 325

                        170       180       190       200       210       220       230
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 326653249 214 STFML---------LILSS--------SKTIKDLTTSWAISPTTTTMMLFLLMSMAGLPPLTGFMPKWLIL 267
Cdd:COG1009  326 ALFHLlthaffkalLFLGAgsvihatgTRDIRKMGGLRKKMPITAITFLIGALSLAGIPPFAGFFSKEAIL 396
PRK12646 PRK12646
DUF4040 family protein;
92-291 6.13e-04

DUF4040 family protein;


Pssm-ID: 183646 [Multi-domain]  Cd Length: 800  Bit Score: 41.66  E-value: 6.13e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 326653249  92 PIASIMLTMALSMKLGLAPLHFWLPEVLQGSDLKTALIITTWQKLAPISLLY-----LTHQSLHPTTMLTMGLMSTLVGG 166
Cdd:PRK12646 210 IPMIFMFLLGAFTKSAQFPFHIWLPRAMAAPTPVSAYLHSATMVKAGIFLLFrftplLGLSNMYIYIVTFVGLITMLFGS 289

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 326653249 167 WGGLNQTQTRKIMAYSSIAHLGWMATILTLSpnlmlLNLLLYLMMTMSTFMLLIL------------------------- 221
Cdd:PRK12646 290 ITALKQWDLKGILAYSTISQLGMIMAMVGIG-----GGYAQHQQDAIASIYVFVLfaalfhlmnhaifkcalfmgvgiid 364

                        170       180       190       200       210       220       230
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 326653249 222 --SSSKTIKDLTTSWAISPTTTTMMLFLLMSMAGLPPLTGFMPKWLILQDLTT------HSLTTTASLMAMSALLSLF 291
Cdd:PRK12646 365 heAGTRDIRILSGMRQLFPKMNLVMTIAALSMAGVPFLNGFLSKEMFLDALTQtgqlsqFSLISMIIIVFIGVIASIF 442
PRK06473 PRK06473
NADH-quinone oxidoreductase subunit M;
38-266 8.85e-04

NADH-quinone oxidoreductase subunit M;


Pssm-ID: 235810 [Multi-domain]  Cd Length: 500  Bit Score: 40.84  E-value: 8.85e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 326653249  38 LAIIPI---IAKQHHPRATEATTKYFLIQAASSATVLFSSTINAWYTG--TWDIMQM---TNPIASIMLTMA-----LSM 104
Cdd:PRK06473 138 LELIPLyllIAIWGGQRRGYAATKFLLYTAISGILILVSFLGLVWLSGasSFDYEPLrshTLPLSTQLLLLApilvgFGI 217

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 326653249 105 KLGLAPLHFWLPEV-LQGSDLKTALIITTWQKLAPISLL------YLTHQSLHPTTMLTMGLMSTLVGGWGGLNQTQTRK 177
Cdd:PRK06473 218 KIPLVPFHTWLPDAhVEASTPVSVLLAGVLLKLGTYGLLrfgvglFPEAWVYLAPWLATWAVVSVLYGASCAIAQKDMKK 297

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 326653249 178 IMAYSSIAHLGWM----ATILTLSPNLMLLNLLLYLMMTMSTFMLLILSSSKT-------IKDLTTSWAISPTTTTMMLF 246
Cdd:PRK06473 298 MVAYSSIGHMGYIllaaAAATPLSILAAVFQMISHGLISALLFLLVGVVYKKTgsrdvdvLRGLLNPERGLPITGSLMIL 377

                        250       260
                 ....*....|....*....|
gi 326653249 247 LLMSMAGLPPLTGFMPKWLI 266
Cdd:PRK06473 378 GVMASAGIPGMVGFIAEFLV 397
PRK12662 PRK12662
putative monovalent cation/H+ antiporter subunit D; Reviewed
 93-267 1.77e-03

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 183662 [Multi-domain]  Cd Length: 492  Bit Score: 40.10  E-value: 1.77e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 326653249  93 IASIMLTMALSMKLGLAPLHFWLpevLQGSDLKTALIITTWQKLAPISLLYLT--------HQSLHPTT------MLTMG 158
Cdd:PRK12662 210 IGVLFIMVGLFIKAALFPFHKWL---IQAYSEAPSFISVFFSGTSTKVMIYLIirivydvfKANFVFTTlpfnnvFMILA 286

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 326653249 159 LMSTLVGGWGGLNQTQTRKIMAYSSIAHLGWMatILTLSPNLMLLNLLLYL------MMTMSTFMLLILSSSK----TIK 228
Cdd:PRK12662 287 ALAIVFGSVLAILSKDIKRIFAYSSISHIGYI--ILAVSLNTYYGLAAAVAyivnhsIVKSALFMVSGSISYHfgttKLE 364

                        170       180       190
                 ....*....|....*....|....*....|....*....
gi 326653249 229 DLTTSWAISPTTTTMMLFLLMSMAGLPPLTGFMPKWLIL 267
Cdd:PRK12662 365 DCLNLWKSMPKITLAFVLLSLSLIGMPPTSGFVAKWYIL 403
ND4 MTH00226
NADH dehydrogenase subunit 4; Provisional
 100-194 3.70e-03

NADH dehydrogenase subunit 4; Provisional


Pssm-ID: 214466 [Multi-domain]  Cd Length: 505  Bit Score: 39.13  E-value: 3.70e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 326653249 100 MALSMKLGLAPLHFWLPEV-LQGSDLKTALIITTWQKLAPISLLYLT-------HQSLHPTtMLTMGLMSTLVGGWGGLN 171
Cdd:MTH00226 238 LAMAVKIPIFPFHIWLPKAhVEAPVAGSVLLAGILLKLGGYGLVRLSwpilplgAQNLAPA-VIAMGIVGIVYGSFATCR 316

                         90       100
                 ....*....|....*....|...
gi 326653249 172 QTQTRKIMAYSSIAHLGWMATIL 194
Cdd:MTH00226 317 QIDVKRLVAYSSVAHMGLVSITL 339
PRK12644 PRK12644
putative monovalent cation/H+ antiporter subunit A; Reviewed
 101-287 4.52e-03

putative monovalent cation/H+ antiporter subunit A; Reviewed


Pssm-ID: 237154 [Multi-domain]  Cd Length: 965  Bit Score: 38.75  E-value: 4.52e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 326653249 101 ALSmKLGLAPLHFWLPEVLQGSDLKTALI---------ITTWQKLAPIsllYLTHQSLHPTTmLTMGLMSTLVGGWGGLN 171
Cdd:PRK12644 213 ALS-KSAIVPFHFWLPGAMAAPTPVSAYLhaaamvkagIYLVARLAPG---FADVPVWRPTV-LVLGLATMLLGGWRALR 287

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 326653249 172 QTQTRKIMAYSSIAHLGWMATILTL-SPNLMLLNLLLYLMMTM---STFML--LILSSSKT--IKDLTTSWAISPTTTTM 243
Cdd:PRK12644 288 QHDLKLILAYGTVSQLGFLTVLVGIgTRDAALAGLAMLLAHALfkaALFLVvgIIDHSTGTrdIRKLSGLGRRQPVLAVV 367

                        170       180       190       200
                 ....*....|....*....|....*....|....*....|....
gi 326653249 244 MLFLLMSMAGLPPLTGFMPKWLILQDLTTHSLTTTASLMAMSAL 287
Cdd:PRK12644 368 AALAAASMAGLPPLLGFVAKEAALEAVLHDGALGPAGPVVLAGI 411
PRK12649 PRK12649
putative monovalent cation/H+ antiporter subunit A; Reviewed
 47-263 6.92e-03

putative monovalent cation/H+ antiporter subunit A; Reviewed


Pssm-ID: 183649 [Multi-domain]  Cd Length: 789  Bit Score: 38.27  E-value: 6.92e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 326653249  47 QHHPRATEATTKYFLIQAASSATVLFSSTINAWYTGTWDIMQMTNP--------------IASIMLTMALSMKLGLAPLH 112
Cdd:PRK12649 155 RHRPESVYGATKSLLITAGGGLFMFAGFLLLHVITGTYDIATILQDselienikghplflITLILIFIGAAAKSAQGPFY 234

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 326653249 113 FWLPEVLQGSDLKTALIITTWQKLAPISLLYLTHQSLHPTTMLTM-----GLMSTLVGGWGGLNQTQTRKIMAYSSIAHL 187
Cdd:PRK12649 235 IWLPNAMEAPTPVSAFLHSATMVKAGVYLVARIHPIFSGTEAWFIlvsgtGMITMVLAGFLAFRQTDIKAILAYSTISQL 314

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 326653249 188 GWMATILTLS----PNLMLLNLLLYLMMTMSTFMLLIL--------SSSKTIKDLTTSWAISPTTTTMMLFLLMSMAGLP 255
Cdd:PRK12649 315 AYLMTMYGYTtyhePGLGVAAATFHLLNHATFKACLFLvagivaheAATRDIRKLGGLRKEMPITFIVASIAALAMAGIP 394


                 ....*...
gi 326653249 256 PLTGFMPK 263
Cdd:PRK12649 395 PLNGFLSK 402
PRK12663 PRK12663
Na+/H+ antiporter subunit D;
141-293 7.50e-03

Na+/H+ antiporter subunit D;


Pssm-ID: 237163 [Multi-domain]  Cd Length: 497  Bit Score: 38.01  E-value: 7.50e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 326653249 141 LLYLTHQSLHPTTMLTMGLMSTLVGGWGGLNQTQTRKIMAYSSIAHLGWMatILTLSPNLMLLNLLLYLMMTMS----TF 216
Cdd:PRK12663 262 LLFPQERELLHPLLATMAAITMVIGALGALAYKDIRRIAGYQVISSIGFI--LLGLALGTPAGINGAIFYLVHDmvvkTA 339

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 326653249 217 MLLI------LSSSKTIKDLTTSWAISPTTTTMMLFLLMSMAGLPPLTGFMPKWLILQDLTTH------SLTTTASLMAM 284
Cdd:PRK12663 340 LFLIagslvrLTGYRSLQYLGGLYRKEPLFGALFLILIFAIGGLPPFSGFWGKVLLVQGALDNgayillALMLITSLITM 419


                 ....*....
gi 326653249 285 SALLSLFFY 293
Cdd:PRK12663 420 YSLFRIFFL 428
PRK07363 PRK07363
NADH-quinone oxidoreductase subunit M;
55-190 8.76e-03

NADH-quinone oxidoreductase subunit M;


Pssm-ID: 180945 [Multi-domain]  Cd Length: 501  Bit Score: 37.77  E-value: 8.76e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 326653249  55 ATTKYFLIQAASSATVLFSSTINAWYTG----------TWDIMQMTNPIASIMLTMALSMKLGLAPLHFWLPEV-LQGSD 123
Cdd:PRK07363 158 ASIKFLIYTAVSGLLVLAAFLGIVWLSGstsfdydaisTQNLSLNTQLILLTGLLLGFGIKIPLVPLHTWLPDAyTEASP 237

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 326653249 124 LKTALIITTWQKLAPISLLYLTHQ------SLHPTTMLTMGLMSTLVGGWGGLNQTQTRKIMAYSSIAHLGWM 190
Cdd:PRK07363 238 AVAILLGGVLAKLGTYGLLRFGLQlfpqtwSLVAPGLAIIGTISVIYGALSAIAQKDIKRMVAYSSIGHMGYI 310
ND5 MTH00210
NADH dehydrogenase subunit 5; Provisional
 103-268 9.48e-03

NADH dehydrogenase subunit 5; Provisional


Pssm-ID: 177253 [Multi-domain]  Cd Length: 616  Bit Score: 37.68  E-value: 9.48e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 326653249 103 SMKLGLaplHFWLPEVLQGSDLKTALI-----ITTWQKLAPISLLYLTHQSLHPTTMLTMGLMSTLVGGWGGLNQTQTRK 177
Cdd:MTH00210 225 SAQLGL---HTWLPDAMEGPTPVSALIhaatmVTAGVFLIIRSGPLFEGSPLALTIVTILGALTAFFAATVGVVQNDLKK 301

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 326653249 178 IMAYSSIAHLGWMATILTLSpnlmllnlllylMMTMSTF---------MLLILSSSKTIKDLTTSWAIS---------PT 239
Cdd:MTH00210 302 VIAYSTCSQLGYMVMVCGIS------------NYSTSLFhlmnhaffkALLFLSAGSVIHAVSDEQDMRkmggliksiPF 369

                        170       180
                 ....*....|....*....|....*....
gi 326653249 240 TTTMMLFLLMSMAGLPPLTGFMPKWLILQ 268
Cdd:MTH00210 370 TYVMILIGSLSLMGFPYLTGFYSKDLILE 398
PRK08676 PRK08676
hydrogenase membrane subunit; Validated
 28-190 9.85e-03

hydrogenase membrane subunit; Validated


Pssm-ID: 181537 [Multi-domain]  Cd Length: 485  Bit Score: 37.81  E-value: 9.85e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 326653249  28 LAWIGLELNTLAIIPIIAKQHHPRATEATTKYFLIQAAS------SATVLFSSTINAWYTGT--WDIMQMTNPIASIMLT 99
Cdd:PRK08676 126 LFWIFAELTTVFSAMLIAILSARENIDAALKYIFIASTAmifafiGLIFLFSLTRQALGTGTlnWTELAAHASLLSPSVL 205

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 326653249 100 MA--------LSMKLGLAPLHFWLPEV-LQGSDLKTALIITTWQKLAPISLLYLT---HQSLHPTT----MLTMGLMSTL 163
Cdd:PRK08676 206 GAsflfifigFLAKSGLVPFHTWLPAAyAKAPSVVSALLSGTVLNIGIYGILRLSallRQSGAAEQfsnvLIGLGIFSIA 285

                        170       180
                 ....*....|....*....|....*..
gi 326653249 164 VGGWGGLNQTQTRKIMAYSSIAHLGWM 190
Cdd:PRK08676 286 VAAFSMLSQRNLKKLIAFSSIEHMGLM 312
PRK06521 PRK06521
hydrogenase 4 subunit B; Validated
 43-270 9.88e-03

hydrogenase 4 subunit B; Validated


Pssm-ID: 235820 [Multi-domain]  Cd Length: 667  Bit Score: 37.95  E-value: 9.88e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 326653249  43 IIAKQHHPRATEATTKYFLIQAASSATVLFSSTINAWYTGTWDIMQM-----TNPIASIMLTMAL---SMKLGLAPLHFW 114
Cdd:PRK06521 153 VIANHREAEIRRAGFLYLLMAHAGALAILLAFGLLARESGSYDFAAMraahlSPFWASLVFLLALfgfGAKAGLVPLHVW 232

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 326653249 115 LPE-----------VLQGSDLKTAL--IITTWQKLAPISLLYLThqslhpTTMLTMGLMSTLVGGWGGLNQTQTRKIMAY 181
Cdd:PRK06521 233 LPRahpaapshvsaLMSGVMLKVAIygILRVVFDLLGAPGWWWG------VLVLALGAISAVLGVLYALAEHDLKRLLAY 306

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 326653249 182 SSIAHLG--WMATILTLSPNLMLLNLLLYLMMTMSTFMLLILSSSKTIKDLTTSWAISPTTT---------------TMM 244
Cdd:PRK06521 307 STIENIGiiFVGLGLAMVFIAYGMPLLAALALTAALYHLLNHALFKSLLFLGAGAVLHATGTrdmeklgglirrmpwTAW 386

                        250       260
                 ....*....|....*....|....*...
gi 326653249 245 LFLL--MSMAGLPPLTGFMPKWLILQDL 270
Cdd:PRK06521 387 AFLIgcLAISALPPLNGFVSEWLLLQSL 414
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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