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Conserved domains on  [gi|326633070|ref|YP_004306681|]
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head-tail adaptor [Salmonella phage Vi06]

Protein Classification

head-tail connector protein( domain architecture ID 10573741)

head-tail connector protein forms the portal vertex of the capsid, and plays critical roles in head assembly, genome packaging, neck/tail attachment, and genome ejection

Graphical summary

 Zoom to residue level

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List of domain hits

 Name Accession Description Interval E-value
Head-tail_con pfam12236
Bacteriophage head to tail connecting protein; This family of head-tail connector proteins is ...
 18-485 1.31e-117

Bacteriophage head to tail connecting protein; This family of head-tail connector proteins is found in bacteria and viruses. Proteins in this family are typically between 516 and 555 amino acids in length. This protein is found in Phage T7 and T3 among others.


:

Pssm-ID: 432415  Cd Length: 478  Bit Score: 355.47  E-value: 1.31e-117
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 326633070   18 ERLKNDRAPYETRAQNCAQYTIPSL--FPKDSDNASTDYTTPWQAVGARGLNNLASKLMLALF-PMQTWMRLTiseyeak 94
Cdd:pfam12236   1 EALKAERSPWESRWQECADYALPRRgrNRGSSGPGRRRGDRIFDGTAARALRVLAAGLMGGLTpPARPWFRLT------- 73

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 326633070   95 qlLSDPDGL--AKVDEGLSMVERIIMNYIESNSYRVTLFEALKQLVVAGNVLLYLpEPDGSNYNPMKLYRLSSYVVQRDA 172
Cdd:pfam12236  74 --LGDEELAdsAEVRAWLDQVERRMQAELARSNFYVALHEAYKDLAVFGTALLYV-EEDPGRVIRFTALPLGEYVVAEDA 150

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 326633070  173 FGNVLQMVTRDQIA-------FG--ALPEDVRKAVEGQGGDKKPDEVIDVYTHIYLD------EESGEYLRYEEAEGMEV 237
Cdd:pfam12236 151 RGRVDTVVRRFEMTarqlvqrFGldALPPEVRRALERGKPDARVEVVHAVYPRADRDpgkldaRNMPFASVYWEVDGDEV 230

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 326633070  238 QGSDGsypKEACPYIPIRMVRLDGESYGRSYIEEYLGDLRSLENLQEAIVKMSMISskviglVNPAGITQPRRltKAQTG 317
Cdd:pfam12236 231 LGESG---YEEFPYIVPRWEKAGGEVYGRSPGMDALPDIKTLQKLSRAKLKAADKA------VNPPMQVPDDG--KLNPG 299

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 326633070  318 DFVTGRPEDIS-----FLQLEKQADFTVAKSVSDAIEARLSFAFMLN--SAVQRTGErVTAEEIRYVASELEDTLGGVYS 390
Cdd:pfam12236 300 NLVPGGLNYVAvgsaiLPPLQVNGDFAVSLEVIQDLRERIRRAFFLDlmLANQRRAE-VTATEVAERAEEKLLLLGPVYG 378

                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 326633070  391 ILSQELQLPLVRVLLKQLQATQQIPELPKE--------AVEPTISTGLEAiGRGQDLDKLERCVAAWAAMAPMRDDpDIN 462
Cdd:pfam12236 379 RLQTELLSPLIDRTFSIMRRAGRLPPPPEElggrdvkvEYVSPLAQAQKA-GGAQGLDRLLGFVGQLAQAAPEVLD-KID 456

                         490       500
                  ....*....|....*....|...
gi 326633070  463 LAMIKLRIANAIGIDTSgILLTE 485
Cdd:pfam12236 457 WDQAVDELADALGVPAS-LLRSD 478
 
Name Accession Description Interval E-value
Head-tail_con pfam12236
Bacteriophage head to tail connecting protein; This family of head-tail connector proteins is ...
 18-485 1.31e-117

Bacteriophage head to tail connecting protein; This family of head-tail connector proteins is found in bacteria and viruses. Proteins in this family are typically between 516 and 555 amino acids in length. This protein is found in Phage T7 and T3 among others.


Pssm-ID: 432415  Cd Length: 478  Bit Score: 355.47  E-value: 1.31e-117
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 326633070   18 ERLKNDRAPYETRAQNCAQYTIPSL--FPKDSDNASTDYTTPWQAVGARGLNNLASKLMLALF-PMQTWMRLTiseyeak 94
Cdd:pfam12236   1 EALKAERSPWESRWQECADYALPRRgrNRGSSGPGRRRGDRIFDGTAARALRVLAAGLMGGLTpPARPWFRLT------- 73

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 326633070   95 qlLSDPDGL--AKVDEGLSMVERIIMNYIESNSYRVTLFEALKQLVVAGNVLLYLpEPDGSNYNPMKLYRLSSYVVQRDA 172
Cdd:pfam12236  74 --LGDEELAdsAEVRAWLDQVERRMQAELARSNFYVALHEAYKDLAVFGTALLYV-EEDPGRVIRFTALPLGEYVVAEDA 150

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 326633070  173 FGNVLQMVTRDQIA-------FG--ALPEDVRKAVEGQGGDKKPDEVIDVYTHIYLD------EESGEYLRYEEAEGMEV 237
Cdd:pfam12236 151 RGRVDTVVRRFEMTarqlvqrFGldALPPEVRRALERGKPDARVEVVHAVYPRADRDpgkldaRNMPFASVYWEVDGDEV 230

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 326633070  238 QGSDGsypKEACPYIPIRMVRLDGESYGRSYIEEYLGDLRSLENLQEAIVKMSMISskviglVNPAGITQPRRltKAQTG 317
Cdd:pfam12236 231 LGESG---YEEFPYIVPRWEKAGGEVYGRSPGMDALPDIKTLQKLSRAKLKAADKA------VNPPMQVPDDG--KLNPG 299

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 326633070  318 DFVTGRPEDIS-----FLQLEKQADFTVAKSVSDAIEARLSFAFMLN--SAVQRTGErVTAEEIRYVASELEDTLGGVYS 390
Cdd:pfam12236 300 NLVPGGLNYVAvgsaiLPPLQVNGDFAVSLEVIQDLRERIRRAFFLDlmLANQRRAE-VTATEVAERAEEKLLLLGPVYG 378

                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 326633070  391 ILSQELQLPLVRVLLKQLQATQQIPELPKE--------AVEPTISTGLEAiGRGQDLDKLERCVAAWAAMAPMRDDpDIN 462
Cdd:pfam12236 379 RLQTELLSPLIDRTFSIMRRAGRLPPPPEElggrdvkvEYVSPLAQAQKA-GGAQGLDRLLGFVGQLAQAAPEVLD-KID 456

                         490       500
                  ....*....|....*....|...
gi 326633070  463 LAMIKLRIANAIGIDTSgILLTE 485
Cdd:pfam12236 457 WDQAVDELADALGVPAS-LLRSD 478
PHA00670 PHA00670
hypothetical protein
 19-523 6.07e-06

hypothetical protein


Pssm-ID: 106978  Cd Length: 540  Bit Score: 49.08  E-value: 6.07e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 326633070  19 RLKNDRAPYETRAQNCAQYTIPSL---FPKDSDNASTDYTTPWQAVGARGLNNLASKLMLALF-PMQTWMRLTISEYEak 94
Cdd:PHA00670  12 QLKTERQSVESHWDEISDYIMPRRsrfFSDDRNRGENRNRKIFDSTGTDALRTLSSGMMSGITsPARPWFRLATRDPE-- 89

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 326633070  95 qlLSDPDGLAKVDEGLsmVERIIMNYIESNSYRvTLFEALKQLVVAGNVLLYLPEPDGSNYNPMKLYRLSSYVV-----Q 169
Cdd:PHA00670  90 --LNEDAEVKAWLENV--TRDMYSAFQKSNFYL-ELNETYISLGGFGTAAMVVEEDEDEVVVFQSSPIGDYYFAednrgQ 164

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 326633070 170 RDAFGNVLQMVTRdQIA--FG--ALPEDVRKAVEgQGGDKKPDEVID-VYTHI-----YLDEESGEYLR-YEEAEGMEVQ 238
Cdd:PHA00670 165 VDTFYRQFRWTVA-QMVqeFGdeNTSESVQSKAE-EGSNEAWVEVVHaVEPRAdrdpsKLDPRNMPFKSvYFEKGGDEVR 242

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 326633070 239 -GSDGSYpkEACPYIPIRMVRLDGESYGRSYIEEYLGDLRSLENLQEAIVKMSmisSKVIglvNPagitqPRRLTKAQTG 317
Cdd:PHA00670 243 lLRESGY--REFPALAPRWRVSGGDVYGFSPAMLALGDVRTLQREQKRKAQSI---DKVI---NP-----PLMAPESGKN 309

                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 326633070 318 DFVTGRPEDISFL-QLEKQADFTVAKSVSDAIEARLSFAFMLNSAVQR-------------TGERVTAEEIRYVASELED 383
Cdd:PHA00670 310 QDISLGPGGLTYVdDMESNGGIRKAFEVNARFDVLLADIQDTRQTINRiyyvdlfqmlankDSPAMTATEVQERYEEKLL 389

                        410       420       430       440       450       460       470       480
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 326633070 384 TLGGVYSILSQELQLPLVRVLLKQLQATQQIPELPKEAVEPTIStgLEAIG------RGQDLDKLERCVAAWAAMAPMR- 456
Cdd:PHA00670 390 MLGPVLERLENEFLSPLIQRTFNIMVRANKLPEPPQELQGADLD--VEYTSplaqaqKAIQAASIERWVGSLGQLAQIKp 467

                        490       500       510       520       530       540       550
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 326633070 457 ---DDPDINlAMIKLrIANAIGIDTSGILLTEE---QRQQKMAQQSMQLGMDSGAAAlGQGMAAQA---TASPEAM 523
Cdd:PHA00670 468 evlDKPDWD-RMADM-LADMLGVPPTLIVPKEQvqsIRKQRAQQQQAAQQAAIAEAA-ANAAKALGkaqTSLQEAL 540
 
Name Accession Description Interval E-value
Head-tail_con pfam12236
Bacteriophage head to tail connecting protein; This family of head-tail connector proteins is ...
 18-485 1.31e-117

Bacteriophage head to tail connecting protein; This family of head-tail connector proteins is found in bacteria and viruses. Proteins in this family are typically between 516 and 555 amino acids in length. This protein is found in Phage T7 and T3 among others.


Pssm-ID: 432415  Cd Length: 478  Bit Score: 355.47  E-value: 1.31e-117
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 326633070   18 ERLKNDRAPYETRAQNCAQYTIPSL--FPKDSDNASTDYTTPWQAVGARGLNNLASKLMLALF-PMQTWMRLTiseyeak 94
Cdd:pfam12236   1 EALKAERSPWESRWQECADYALPRRgrNRGSSGPGRRRGDRIFDGTAARALRVLAAGLMGGLTpPARPWFRLT------- 73

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 326633070   95 qlLSDPDGL--AKVDEGLSMVERIIMNYIESNSYRVTLFEALKQLVVAGNVLLYLpEPDGSNYNPMKLYRLSSYVVQRDA 172
Cdd:pfam12236  74 --LGDEELAdsAEVRAWLDQVERRMQAELARSNFYVALHEAYKDLAVFGTALLYV-EEDPGRVIRFTALPLGEYVVAEDA 150

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 326633070  173 FGNVLQMVTRDQIA-------FG--ALPEDVRKAVEGQGGDKKPDEVIDVYTHIYLD------EESGEYLRYEEAEGMEV 237
Cdd:pfam12236 151 RGRVDTVVRRFEMTarqlvqrFGldALPPEVRRALERGKPDARVEVVHAVYPRADRDpgkldaRNMPFASVYWEVDGDEV 230

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 326633070  238 QGSDGsypKEACPYIPIRMVRLDGESYGRSYIEEYLGDLRSLENLQEAIVKMSMISskviglVNPAGITQPRRltKAQTG 317
Cdd:pfam12236 231 LGESG---YEEFPYIVPRWEKAGGEVYGRSPGMDALPDIKTLQKLSRAKLKAADKA------VNPPMQVPDDG--KLNPG 299

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 326633070  318 DFVTGRPEDIS-----FLQLEKQADFTVAKSVSDAIEARLSFAFMLN--SAVQRTGErVTAEEIRYVASELEDTLGGVYS 390
Cdd:pfam12236 300 NLVPGGLNYVAvgsaiLPPLQVNGDFAVSLEVIQDLRERIRRAFFLDlmLANQRRAE-VTATEVAERAEEKLLLLGPVYG 378

                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 326633070  391 ILSQELQLPLVRVLLKQLQATQQIPELPKE--------AVEPTISTGLEAiGRGQDLDKLERCVAAWAAMAPMRDDpDIN 462
Cdd:pfam12236 379 RLQTELLSPLIDRTFSIMRRAGRLPPPPEElggrdvkvEYVSPLAQAQKA-GGAQGLDRLLGFVGQLAQAAPEVLD-KID 456

                         490       500
                  ....*....|....*....|...
gi 326633070  463 LAMIKLRIANAIGIDTSgILLTE 485
Cdd:pfam12236 457 WDQAVDELADALGVPAS-LLRSD 478
PHA00670 PHA00670
hypothetical protein
 19-523 6.07e-06

hypothetical protein


Pssm-ID: 106978  Cd Length: 540  Bit Score: 49.08  E-value: 6.07e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 326633070  19 RLKNDRAPYETRAQNCAQYTIPSL---FPKDSDNASTDYTTPWQAVGARGLNNLASKLMLALF-PMQTWMRLTISEYEak 94
Cdd:PHA00670  12 QLKTERQSVESHWDEISDYIMPRRsrfFSDDRNRGENRNRKIFDSTGTDALRTLSSGMMSGITsPARPWFRLATRDPE-- 89

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 326633070  95 qlLSDPDGLAKVDEGLsmVERIIMNYIESNSYRvTLFEALKQLVVAGNVLLYLPEPDGSNYNPMKLYRLSSYVV-----Q 169
Cdd:PHA00670  90 --LNEDAEVKAWLENV--TRDMYSAFQKSNFYL-ELNETYISLGGFGTAAMVVEEDEDEVVVFQSSPIGDYYFAednrgQ 164

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 326633070 170 RDAFGNVLQMVTRdQIA--FG--ALPEDVRKAVEgQGGDKKPDEVID-VYTHI-----YLDEESGEYLR-YEEAEGMEVQ 238
Cdd:PHA00670 165 VDTFYRQFRWTVA-QMVqeFGdeNTSESVQSKAE-EGSNEAWVEVVHaVEPRAdrdpsKLDPRNMPFKSvYFEKGGDEVR 242

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 326633070 239 -GSDGSYpkEACPYIPIRMVRLDGESYGRSYIEEYLGDLRSLENLQEAIVKMSmisSKVIglvNPagitqPRRLTKAQTG 317
Cdd:PHA00670 243 lLRESGY--REFPALAPRWRVSGGDVYGFSPAMLALGDVRTLQREQKRKAQSI---DKVI---NP-----PLMAPESGKN 309

                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 326633070 318 DFVTGRPEDISFL-QLEKQADFTVAKSVSDAIEARLSFAFMLNSAVQR-------------TGERVTAEEIRYVASELED 383
Cdd:PHA00670 310 QDISLGPGGLTYVdDMESNGGIRKAFEVNARFDVLLADIQDTRQTINRiyyvdlfqmlankDSPAMTATEVQERYEEKLL 389

                        410       420       430       440       450       460       470       480
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 326633070 384 TLGGVYSILSQELQLPLVRVLLKQLQATQQIPELPKEAVEPTIStgLEAIG------RGQDLDKLERCVAAWAAMAPMR- 456
Cdd:PHA00670 390 MLGPVLERLENEFLSPLIQRTFNIMVRANKLPEPPQELQGADLD--VEYTSplaqaqKAIQAASIERWVGSLGQLAQIKp 467

                        490       500       510       520       530       540       550
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 326633070 457 ---DDPDINlAMIKLrIANAIGIDTSGILLTEE---QRQQKMAQQSMQLGMDSGAAAlGQGMAAQA---TASPEAM 523
Cdd:PHA00670 468 evlDKPDWD-RMADM-LADMLGVPPTLIVPKEQvqsIRKQRAQQQQAAQQAAIAEAA-ANAAKALGkaqTSLQEAL 540
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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