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Conserved domains on  [gi|326370455|gb|ADZ56267|]
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NADH dehydrogenase subunit 3 (mitochondrion) [Bryodema luctuosum luctuosum]

Protein Classification

NADH dehydrogenase subunit 3( domain architecture ID 10009596)

NADH dehydrogenase subunit 3 is a core subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I) that couples the transfer of electrons from NADH to quinone with the translocation of protons across the membrane

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
ND3 MTH00161
NADH dehydrogenase subunit 3; Provisional
 3-115 6.47e-42

NADH dehydrogenase subunit 3; Provisional


:

Pssm-ID: 177217 [Multi-domain]  Cd Length: 113  Bit Score: 133.75  E-value: 6.47e-42
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 326370455   3 ILMTSISISLILPMTIMMIATTLSKKSTNDREKSSPFECGFDPKSSARMPFSLQFFLIAVIFLIFDVEIAMILPIVIIFK 82
Cdd:MTH00161   1 MILIILLIILLISIILMILASLLSKKSIMDREKSSPFECGFDPKSSARLPFSLRFFLIAIIFLIFDVEIALLLPMIFIFK 80

                         90       100       110
                 ....*....|....*....|....*....|...
gi 326370455  83 TSNIKMWTMATTIFIMILLMGLYYEWNQGALQW 115
Cdd:MTH00161  81 TSNMMSWLITSSFFILILLLGLYYEWNQGALEW 113
 
Name Accession Description Interval E-value
ND3 MTH00161
NADH dehydrogenase subunit 3; Provisional
 3-115 6.47e-42

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 177217 [Multi-domain]  Cd Length: 113  Bit Score: 133.75  E-value: 6.47e-42
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 326370455   3 ILMTSISISLILPMTIMMIATTLSKKSTNDREKSSPFECGFDPKSSARMPFSLQFFLIAVIFLIFDVEIAMILPIVIIFK 82
Cdd:MTH00161   1 MILIILLIILLISIILMILASLLSKKSIMDREKSSPFECGFDPKSSARLPFSLRFFLIAIIFLIFDVEIALLLPMIFIFK 80

                         90       100       110
                 ....*....|....*....|....*....|...
gi 326370455  83 TSNIKMWTMATTIFIMILLMGLYYEWNQGALQW 115
Cdd:MTH00161  81 TSNMMSWLITSSFFILILLLGLYYEWNQGALEW 113
Oxidored_q4 pfam00507
NADH-ubiquinone/plastoquinone oxidoreductase, chain 3;
19-114 4.94e-28

NADH-ubiquinone/plastoquinone oxidoreductase, chain 3;


Pssm-ID: 459838 [Multi-domain]  Cd Length: 94  Bit Score: 97.88  E-value: 4.94e-28
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 326370455   19 MMIATTLSKKSTNdREKSSPFECGFDPKSSARMPFSLQFFLIAVIFLIFDVEIAMILPIVIIFKTSNIkMWTMATTIFIM 98
Cdd:pfam00507   1 LLLSRLLGPKRPN-PEKLSPYECGFDPVGDARLRFSVRFYLVAILFLIFDVEVVFLFPWAVSFRELGW-FGFVEMLIFIA 78

                          90
                  ....*....|....*.
gi 326370455   99 ILLMGLYYEWNQGALQ 114
Cdd:pfam00507  79 ILLVGLVYAWKKGALE 94
NuoA COG0838
NADH:ubiquinone oxidoreductase subunit 3 (chain A) [Energy production and conversion]; NADH: ...
 10-115 1.50e-25

NADH:ubiquinone oxidoreductase subunit 3 (chain A) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 3 (chain A) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440600 [Multi-domain]  Cd Length: 117  Bit Score: 92.49  E-value: 1.50e-25
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 326370455  10 ISLILPMTIMMIATTLSKKSTNdREKSSPFECGFDPKSSARMPFSLQFFLIAVIFLIFDVEIAMILPIVIIFKTSNI-KM 88
Cdd:COG0838   14 VALGLALAMLLLSRLLGPKRPN-PEKLSPYECGIEPVGDARIRFSVRYYLVALLFVIFDVEVVFLFPWAVVFRELGWfGL 92

                         90       100
                 ....*....|....*....|....*..
gi 326370455  89 WTMAttIFIMILLMGLYYEWNQGALQW 115
Cdd:COG0838   93 IEML--VFIAILLVGLIYAWKKGALEW 117
 
Name Accession Description Interval E-value
ND3 MTH00161
NADH dehydrogenase subunit 3; Provisional
 3-115 6.47e-42

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 177217 [Multi-domain]  Cd Length: 113  Bit Score: 133.75  E-value: 6.47e-42
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 326370455   3 ILMTSISISLILPMTIMMIATTLSKKSTNDREKSSPFECGFDPKSSARMPFSLQFFLIAVIFLIFDVEIAMILPIVIIFK 82
Cdd:MTH00161   1 MILIILLIILLISIILMILASLLSKKSIMDREKSSPFECGFDPKSSARLPFSLRFFLIAIIFLIFDVEIALLLPMIFIFK 80

                         90       100       110
                 ....*....|....*....|....*....|...
gi 326370455  83 TSNIKMWTMATTIFIMILLMGLYYEWNQGALQW 115
Cdd:MTH00161  81 TSNMMSWLITSSFFILILLLGLYYEWNQGALEW 113
ND3 MTH00148
NADH dehydrogenase subunit 3; Provisional
 1-117 4.49e-41

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 214433 [Multi-domain]  Cd Length: 117  Bit Score: 131.90  E-value: 4.49e-41
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 326370455   1 MTILMTSISISLILPMTIMMIATTLSKKSTNDREKSSPFECGFDPKSSARMPFSLQFFLIAVIFLIFDVEIAMILPIVII 80
Cdd:MTH00148   1 MLSILLSLLFALILSPVLLLLGLVLSKRSYSDREKSSPFECGFDPISSARSPFSLRFFLLAILFLVFDVEIVLLFPVLQS 80

                         90       100       110
                 ....*....|....*....|....*....|....*..
gi 326370455  81 FKTSNIKMWTMATTIFIMILLMGLYYEWNQGALQWAE 117
Cdd:MTH00148  81 LGSSFSVWSLTSLFIFLLILILGLFHEWNEGSLDWVS 117
ND3 MTH00202
NADH dehydrogenase subunit 3; Provisional
 1-117 1.24e-38

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 214455 [Multi-domain]  Cd Length: 117  Bit Score: 125.49  E-value: 1.24e-38
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 326370455   1 MTILMTSISISLILPMTIMMIATTLSKKSTNDREKSSPFECGFDPKSSARMPFSLQFFLIAVIFLIFDVEIAMILPIVII 80
Cdd:MTH00202   1 MLLILFMSILSILISSLLFLVSWMLSFRSLMDREKSSPFECGFDPKESARLPFSMRFFLLAVIFLVFDIEIALLLPLPLV 80

                         90       100       110
                 ....*....|....*....|....*....|....*..
gi 326370455  81 FKTSNIKMWTMATTIFIMILLMGLYYEWNQGALQWAE 117
Cdd:MTH00202  81 LKSSWSKGGLLGGTIFLLILIGGLIHEWKEGSLDWVK 117
ND3 MTH00012
NADH dehydrogenase subunit 3; Validated
 1-116 2.91e-36

NADH dehydrogenase subunit 3; Validated


Pssm-ID: 164588 [Multi-domain]  Cd Length: 117  Bit Score: 119.58  E-value: 2.91e-36
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 326370455   1 MTILMTSISISLILPMTIMMIATTLSKKSTNDREKSSPFECGFDPKSSARMPFSLQFFLIAVIFLIFDVEIAMILPIVII 80
Cdd:MTH00012   1 MSLMMIPMMISLILPPLVLGAAWVLAARSTADREKTSPFECGFDPHKTARIPFSLRFFLLAIIFIVFDIEIVLLMPVPTI 80

                         90       100       110
                 ....*....|....*....|....*....|....*.
gi 326370455  81 FKTSNIKMWTMATTIFIMILLMGLYYEWNQGALQWA 116
Cdd:MTH00012  81 LMTSTSKTVVYTSILFLLILVIGLIHEWREGSLDWS 116
ND3 MTH00136
NADH dehydrogenase subunit 3; Provisional
 1-117 1.37e-31

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 177194 [Multi-domain]  Cd Length: 116  Bit Score: 107.70  E-value: 1.37e-31
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 326370455   1 MTILMTSISISLILPMTIMMIATTLSKkSTNDREKSSPFECGFDPKSSARMPFSLQFFLIAVIFLIFDVEIAMILPIVII 80
Cdd:MTH00136   1 MNLITTILTITIALSLILAIVSFWLPQ-MTPDHEKLSPYECGFDPLGSARLPFSLRFFLVAILFLLFDLEIALLLPLPWG 79

                         90       100       110
                 ....*....|....*....|....*....|....*..
gi 326370455  81 FKTSNIKMWTMATTIFIMILLMGLYYEWNQGALQWAE 117
Cdd:MTH00136  80 DQLPSPLLTFFWATAVLILLTLGLIYEWLQGGLEWAE 116
ND3 MTH00106
NADH dehydrogenase subunit 3; Provisional
 4-117 1.17e-30

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 177168 [Multi-domain]  Cd Length: 115  Bit Score: 105.41  E-value: 1.17e-30
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 326370455   4 LMTSISISLILPMTIMMIATTLSKKSTNdREKSSPFECGFDPKSSARMPFSLQFFLIAVIFLIFDVEIAMILPIVIIFKT 83
Cdd:MTH00106   3 LMLTLLTNTLLASLLVLIAFWLPQLNIY-SEKASPYECGFDPMGSARLPFSMKFFLVAITFLLFDLEIALLLPLPWASQT 81

                         90       100       110
                 ....*....|....*....|....*....|....
gi 326370455  84 SNIKMWTMATTIFIMILLMGLYYEWNQGALQWAE 117
Cdd:MTH00106  82 NNLNTMLTMALLLISLLALSLAYEWTQKGLEWTE 115
ND3 MTH00042
NADH dehydrogenase subunit 3; Validated
 1-117 4.06e-29

NADH dehydrogenase subunit 3; Validated


Pssm-ID: 177117 [Multi-domain]  Cd Length: 116  Bit Score: 101.60  E-value: 4.06e-29
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 326370455   1 MTILMTSISISLILPMTIMMIATTLSKKStNDREKSSPFECGFDPKSSARMPFSLQFFLIAVIFLIFDVEIAMILPIVII 80
Cdd:MTH00042   1 MTNLIFFLLIILILTSLLLLAGHFLPSRS-PDLEKSSPYECGFDPLNSARLPFSFRFFLVAILFLLFDLEIALLFPLPPA 79

                         90       100       110
                 ....*....|....*....|....*....|....*..
gi 326370455  81 FKTSNIKMWTMATTIFIMILLMGLYYEWNQGALQWAE 117
Cdd:MTH00042  80 TLITNPSTLLPISLIFLIILTIGLVYEWVNGGLEWAE 116
ND3 MTH00113
NADH dehydrogenase subunit 3; Provisional
 4-116 4.21e-29

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 177175 [Multi-domain]  Cd Length: 114  Bit Score: 101.50  E-value: 4.21e-29
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 326370455   4 LMTSISISLILPMTIMMIATTLSKKSTnDREKSSPFECGFDPKSSARMPFSLQFFLIAVIFLIFDVEIAMILPIVIIFKT 83
Cdd:MTH00113   3 LISMLTISLALSTILTTLNFWLTQTKP-DNEKLSPYECGFDPLGSARLPFSIRFFLVAILFLLFDLEIALLLPLPWAINL 81

                         90       100       110
                 ....*....|....*....|....*....|...
gi 326370455  84 SNIKMWTMATTIFIMILLMGLYYEWNQGALQWA 116
Cdd:MTH00113  82 TTPTTTLTWATIILTLLTLGLIYEWLQGGLEWA 114
ND3 MTH00203
NADH dehydrogenase subunit 3; Provisional
 1-115 2.54e-28

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 214456 [Multi-domain]  Cd Length: 112  Bit Score: 99.20  E-value: 2.54e-28
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 326370455   1 MTILMTSISISLILPMTIMMIATTLSKkSTNDREKSSPFECGFDPKSSARMPFSLQFFLIAVIFLIFDVEIAMILPIVII 80
Cdd:MTH00203   1 MNLIMLFFLIALLLSLILLFIAFWLPK-VNPDGEKLSPYECGFDPLGSARLPFSLQFFLVALSFLLFDLEIALLLPLPWS 79

                         90       100       110
                 ....*....|....*....|....*....|....*
gi 326370455  81 FKTSNikMWTMATTIFIMILLMGLYYEWNQGALQW 115
Cdd:MTH00203  80 NQLSS--LSLLLAFLFLILLTLGLIYEWLQGGLEW 112
Oxidored_q4 pfam00507
NADH-ubiquinone/plastoquinone oxidoreductase, chain 3;
19-114 4.94e-28

NADH-ubiquinone/plastoquinone oxidoreductase, chain 3;


Pssm-ID: 459838 [Multi-domain]  Cd Length: 94  Bit Score: 97.88  E-value: 4.94e-28
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 326370455   19 MMIATTLSKKSTNdREKSSPFECGFDPKSSARMPFSLQFFLIAVIFLIFDVEIAMILPIVIIFKTSNIkMWTMATTIFIM 98
Cdd:pfam00507   1 LLLSRLLGPKRPN-PEKLSPYECGFDPVGDARLRFSVRFYLVAILFLIFDVEVVFLFPWAVSFRELGW-FGFVEMLIFIA 78

                          90
                  ....*....|....*.
gi 326370455   99 ILLMGLYYEWNQGALQ 114
Cdd:pfam00507  79 ILLVGLVYAWKKGALE 94
ND3 MTH00069
NADH dehydrogenase subunit 3; Provisional
 16-117 8.33e-27

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 177141 [Multi-domain]  Cd Length: 114  Bit Score: 95.45  E-value: 8.33e-27
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 326370455  16 MTIMMIATTLS----------KKSTNDREKSSPFECGFDPKSSARMPFSLQFFLIAVIFLIFDVEIAMILPI---VIIFK 82
Cdd:MTH00069   3 MLMLLISTILSlilitisfwlPLNNPDSEKLSPYECGFDPLGSARLPFSIRFFLVAILFLLFDLEIALLLPTpwaSQLNT 82

                         90       100       110
                 ....*....|....*....|....*....|....*
gi 326370455  83 TSNIKMWtmaTTIFIMILLMGLYYEWNQGALQWAE 117
Cdd:MTH00069  83 PTNTLFW---STLILILLTLGLIYEWIQGGLEWAE 114
NuoA COG0838
NADH:ubiquinone oxidoreductase subunit 3 (chain A) [Energy production and conversion]; NADH: ...
 10-115 1.50e-25

NADH:ubiquinone oxidoreductase subunit 3 (chain A) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 3 (chain A) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440600 [Multi-domain]  Cd Length: 117  Bit Score: 92.49  E-value: 1.50e-25
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 326370455  10 ISLILPMTIMMIATTLSKKSTNdREKSSPFECGFDPKSSARMPFSLQFFLIAVIFLIFDVEIAMILPIVIIFKTSNI-KM 88
Cdd:COG0838   14 VALGLALAMLLLSRLLGPKRPN-PEKLSPYECGIEPVGDARIRFSVRYYLVALLFVIFDVEVVFLFPWAVVFRELGWfGL 92

                         90       100
                 ....*....|....*....|....*..
gi 326370455  89 WTMAttIFIMILLMGLYYEWNQGALQW 115
Cdd:COG0838   93 IEML--VFIAILLVGLIYAWKKGALEW 117
PRK06602 PRK06602
NADH:ubiquinone oxidoreductase subunit A; Validated
 10-116 2.25e-24

NADH:ubiquinone oxidoreductase subunit A; Validated


Pssm-ID: 180638 [Multi-domain]  Cd Length: 121  Bit Score: 89.54  E-value: 2.25e-24
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 326370455  10 ISLILPMTIMMIATTLSKKStNDREKSSPFECGFDPKSSARMPFSLQFFLIAVIFLIFDVEIAMILPIVIIFKTSN-IKM 88
Cdd:PRK06602  17 VAIGLGILLLVAGKLLGPRA-PDREKNSPYESGFEAFGDARMKFDVRFYLVAILFVIFDLEAAFLFPWAVSFREIGwLGF 95

                         90       100
                 ....*....|....*....|....*...
gi 326370455  89 WTMatTIFIMILLMGLYYEWNQGALQWA 116
Cdd:PRK06602  96 VEA--MIFILVLLVGLVYLWRKGALDWE 121
ND3 MTH00018
NADH dehydrogenase subunit 3; Validated
 8-115 6.35e-22

NADH dehydrogenase subunit 3; Validated


Pssm-ID: 164592 [Multi-domain]  Cd Length: 113  Bit Score: 83.19  E-value: 6.35e-22
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 326370455   8 ISISLILPMTIMMIATTLSKKSTnDREKSSPFECGFDPKSSARMPFSLQFFLIAVIFLIFDVEIAMILPIVIIFK-TSNI 86
Cdd:MTH00018   7 LIFSVVLSALFSGASYFLGVKQP-DREKVSAYECGFDPFGFPGRPFSIRFFLIGILFLIFDLEISFLFPWCVLYNqIAPF 85

                         90       100
                 ....*....|....*....|....*....
gi 326370455  87 KMWTMAttIFIMILLMGLYYEWNQGALQW 115
Cdd:MTH00018  86 GFWTMV--GFLFILTLGLIYEWIKGGLEW 112
ND3 MTH00055
NADH dehydrogenase subunit 3; Provisional
 32-115 9.50e-20

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 177128 [Multi-domain]  Cd Length: 118  Bit Score: 77.83  E-value: 9.50e-20
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 326370455  32 DREKSSPFECGFDPKSSARMPFSLQFFLIAVIFLIFDVEIAMILPIVIIF-KTSNIKMWTMatTIFIMILLMGLYYEWNQ 110
Cdd:MTH00055  35 DSEKVSVYECGFDPFESSRIPFSVRFFLVGILFLIFDLEISFLFPWCVVYnQIGLFGFWVM--YLFLIILTIGLIYEWVK 112


                 ....*
gi 326370455 111 GALQW 115
Cdd:MTH00055 113 GGLEW 117
ND3 MTH00030
NADH dehydrogenase subunit 3; Provisional
 32-115 2.96e-17

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 164603 [Multi-domain]  Cd Length: 123  Bit Score: 71.50  E-value: 2.96e-17
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 326370455  32 DREKSSPFECGFDPKSSARMPFSLQFFLIAVIFLIFDVEIAMILPIVIIFKTSNI-KMWTMATtiFIMILLMGLYYEWNQ 110
Cdd:MTH00030  40 DSEKSSIYECGFDPFGKIRTPFTIKFVLVGILFMIFDIEISFLFPWSIVFNQLNLfSFWIVYT--FLIVLAIGLAYEWIK 117


                 ....*
gi 326370455 111 GALQW 115
Cdd:MTH00030 118 GGLEW 122
ndhC CHL00022
NADH dehydrogenase subunit 3
 10-115 1.19e-11

NADH dehydrogenase subunit 3


Pssm-ID: 176964 [Multi-domain]  Cd Length: 120  Bit Score: 56.92  E-value: 1.19e-11
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 326370455  10 ISLILPMTIMMIATTLSKKSTNDrEKSSPFECGFDPKSSARMPFSLQFFLIAVIFLIFDVEIAMILPIVIIFKTSNIKMW 89
Cdd:CHL00022  16 ISSLIPILAFLISGLLAPISKGP-EKLSSYESGIEPMGDAWLQFRIRYYMFALVFVVFDVETVFLYPWAMSFDVLGVSAF 94

                         90       100
                 ....*....|....*....|....*.
gi 326370455  90 TMATtIFIMILLMGLYYEWNQGALQW 115
Cdd:CHL00022  95 IEAL-IFVLILIVGLVYAWRKGALEW 119
PRK08489 PRK08489
NAD(P)H-quinone oxidoreductase subunit 3;
17-115 2.73e-11

NAD(P)H-quinone oxidoreductase subunit 3;


Pssm-ID: 181448 [Multi-domain]  Cd Length: 129  Bit Score: 56.21  E-value: 2.73e-11
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 326370455  17 TIMMIATTLSKKSTN-DRE--KSSPFECGFDP-KSSARMpfSLQFFLIAVIFLIFDVEIAMILPIVIIFKTsnIKMWTMA 92
Cdd:PRK08489  26 LTTRLARFISRKLAQkNTEklKLAIYECGPEPvKQPNRI--SSHFYIMALLFILFDVEIVFMFPWAVDFKL--LGLFGLI 101

                         90       100
                 ....*....|....*....|....
gi 326370455  93 TTI-FIMILLMGLYYEWNQGALQW 115
Cdd:PRK08489 102 EMLlFIVLLTIGFIYAWKKGALEW 125
PRK07756 PRK07756
NADH-quinone oxidoreductase subunit A;
3-115 6.38e-10

NADH-quinone oxidoreductase subunit A;


Pssm-ID: 169084 [Multi-domain]  Cd Length: 122  Bit Score: 52.44  E-value: 6.38e-10
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 326370455   3 ILMTSISISLILPMTIMMIATTLSKKSTNDrEKSSPFECGFDPKSSARMPFSLQFFLIAVIFLIFDVEIAMILPIVIIFK 82
Cdd:PRK07756  11 IVLIFLLLGILLPVVALTLGRMLRPNKPSA-AKATTYESGIEPFHDANIRFHARYYIFALLFVIFDVETLFLYPWAVAYD 89

                         90       100       110
                 ....*....|....*....|....*....|...
gi 326370455  83 TSNIkMWTMATTIFIMILLMGLYYEWNQGALQW 115
Cdd:PRK07756  90 KLGL-FALIEMLIFVVMLLVGLAYAWKKKVLQW 121
PRK07928 PRK07928
NADH dehydrogenase subunit A; Validated
 19-115 8.87e-08

NADH dehydrogenase subunit A; Validated


Pssm-ID: 181171 [Multi-domain]  Cd Length: 119  Bit Score: 46.97  E-value: 8.87e-08
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 326370455  19 MMIATTLSKKSTNdREKSSPFECGFDPKSSARMP--FSLQFFLIAVIFLIFDVEIAMILPIVIIFKTSNIkMWTMATTIF 96
Cdd:PRK07928  22 VVVASLVGPKRYN-RAKLEAYECGIEPTPQPAGGgrFPVKYYLTAMLFIVFDIEIVFLYPWAVSFDALGV-FGLVEMALF 99

                         90
                 ....*....|....*....
gi 326370455  97 IMILLMGLYYEWNQGALQW 115
Cdd:PRK07928 100 MLTVFVAYAYVWRRGGLEW 118
ND3 MTH00092
NADH dehydrogenase subunit 3; Provisional
 1-115 2.19e-07

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 177155  Cd Length: 111  Bit Score: 45.66  E-value: 2.19e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 326370455   1 MTILMTSISISLILPMTIMMIATTLSKKStNDREKSSPFECGFDPKSSARMPFSLQFFLIAVIFLIFDVEIAMILPIVII 80
Cdd:MTH00092   1 MLVLIFVFLFTLLLLMLLYLLNFFLSVKK-FDLLKVSSFECGFESVGKIQNSFSIHFFKIMLMFVIFDLEIVMFLGLLVS 79

                         90       100       110
                 ....*....|....*....|....*....|....*
gi 326370455  81 FKTSNIKMWtmattIFIMILLMGLYYEWNQGALQW 115
Cdd:MTH00092  80 DFSSLISFF-----MLMIFIFFGFYMEWWYGKLIW 109
PRK06432 PRK06432
NADH dehydrogenase subunit A; Validated
 32-115 3.74e-05

NADH dehydrogenase subunit A; Validated


Pssm-ID: 102372  Cd Length: 144  Bit Score: 40.18  E-value: 3.74e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 326370455  32 DREKSSPFECGFDPKSSARMPFSLQFFLIAVIFLIFDVEIAMILPIVIIFKTSNIKMWtMATTIFIMILLMGLYYEWNQG 111
Cdd:PRK06432  60 DQSYLEPYESGEVAREIWGGPSINQYYIVVLLFVVFDVDMLLLFPWAFDFKRLGLIPF-IETLIFLAMPLFAVYYAFKMG 138


                 ....
gi 326370455 112 ALQW 115
Cdd:PRK06432 139 YMRW 142
ND3 MTH00060
NADH dehydrogenase subunit 3; Provisional
 26-115 8.17e-05

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 177132  Cd Length: 116  Bit Score: 39.11  E-value: 8.17e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 326370455  26 SKKSTNDREKSSPFECGFDPKSSARMPFSLQFFLIAVIFLIFDVEIAMILPIV---IIFKTSNIKMwtmattIFIMILLM 102
Cdd:MTH00060  28 NKIYSGGFSWVSSFECGFFSSGLSENCFSFTYFFLLVFFVIFDLEISLLLNMPfqgLLFYNFWYYY------FFLLLLFL 101

                         90
                 ....*....|...
gi 326370455 103 GLYYEWNQGALQW 115
Cdd:MTH00060 102 GFVVELFSGYVRW 114
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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