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Conserved domains on  [gi|326370444|gb|ADZ56257|]
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NADH dehydrogenase subunit 4L (mitochondrion) [Pacris xizangensis]

Protein Classification

NADH dehydrogenase subunit 4L( domain architecture ID 10009597)

NADH dehydrogenase subunit 4L is the core subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (complex I) that is believed to belong to the minimal assembly required for catalysis

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
ND4L MTH00162
NADH dehydrogenase subunit 4L; Provisional
 3-91 6.32e-19

NADH dehydrogenase subunit 4L; Provisional


:

Pssm-ID: 177218  Cd Length: 89  Bit Score: 74.04  E-value: 6.32e-19
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 326370444  3 MFSIFTSLSIYFAGIYIFSFKRKHLLMVLLSLEYIVLSLFLLVVVFLISFDYDYFFPVVFLVFSVCEGALGLSILVSMIR 82
Cdd:MTH00162  1 MMMLLIFLFMFFSGLLVFLSKRKHLLLMLLSLEFMVLSLFFLLFLYLSFFNYELYFLLFFLTFSVCEGALGLSILVSMIR 80


                ....*....
gi 326370444 83 SHGNDFFNS 91
Cdd:MTH00162 81 SHGNDYFSS 89
 
Name Accession Description Interval E-value
ND4L MTH00162
NADH dehydrogenase subunit 4L; Provisional
 3-91 6.32e-19

NADH dehydrogenase subunit 4L; Provisional


Pssm-ID: 177218  Cd Length: 89  Bit Score: 74.04  E-value: 6.32e-19
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 326370444  3 MFSIFTSLSIYFAGIYIFSFKRKHLLMVLLSLEYIVLSLFLLVVVFLISFDYDYFFPVVFLVFSVCEGALGLSILVSMIR 82
Cdd:MTH00162  1 MMMLLIFLFMFFSGLLVFLSKRKHLLLMLLSLEFMVLSLFFLLFLYLSFFNYELYFLLFFLTFSVCEGALGLSILVSMIR 80


                ....*....
gi 326370444 83 SHGNDFFNS 91
Cdd:MTH00162 81 SHGNDYFSS 89
Oxidored_q2 pfam00420
NADH-ubiquinone/plastoquinone oxidoreductase chain 4L;
4-94 1.23e-05

NADH-ubiquinone/plastoquinone oxidoreductase chain 4L;


Pssm-ID: 425672  Cd Length: 95  Bit Score: 40.24  E-value: 1.23e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 326370444   4 FSIFTSLSIYFAGIYIFSFkRKHLLMVLLSLEYIVLSLFLLVVVFLISFDYDY--FFPVVFLVFSVCEGALGLSILVSMI 81
Cdd:pfam00420  1 AYLLLSGLLFLIGLYGLLL-RRNLLRVLLSLELMLNAVNLALVLFGRLTADPLpqALILTAIVIAAAEAAVGLALLVRIY 79

                         90
                 ....*....|...
gi 326370444  82 RSHGNDFFNSFFL 94
Cdd:pfam00420 80 RTHGTDDVDSLNL 92
 
Name Accession Description Interval E-value
ND4L MTH00162
NADH dehydrogenase subunit 4L; Provisional
 3-91 6.32e-19

NADH dehydrogenase subunit 4L; Provisional


Pssm-ID: 177218  Cd Length: 89  Bit Score: 74.04  E-value: 6.32e-19
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 326370444  3 MFSIFTSLSIYFAGIYIFSFKRKHLLMVLLSLEYIVLSLFLLVVVFLISFDYDYFFPVVFLVFSVCEGALGLSILVSMIR 82
Cdd:MTH00162  1 MMMLLIFLFMFFSGLLVFLSKRKHLLLMLLSLEFMVLSLFFLLFLYLSFFNYELYFLLFFLTFSVCEGALGLSILVSMIR 80


                ....*....
gi 326370444 83 SHGNDFFNS 91
Cdd:MTH00162 81 SHGNDYFSS 89
ND4L MTH00188
NADH dehydrogenase subunit 4L; Provisional
 6-97 1.74e-11

NADH dehydrogenase subunit 4L; Provisional


Pssm-ID: 177237  Cd Length: 97  Bit Score: 55.37  E-value: 1.74e-11
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 326370444  6 IFTSLSIYFAGIYIFSFKRKHLLMVLLSLEYIVLSLFLLVVVFLISFDYDYFFPVVFLVFSVCEGALGLSILVSMIRSHG 85
Cdd:MTH00188  6 ILVILLFVVLGLFTFLLNRKHLLMLLLSLEAIMLSLFWFLLVGLSYMEKELYLSLVLLTFAACEASVGLALLVSLIRSHG 85

                        90
                ....*....|..
gi 326370444 86 NDFFNSFFLSLC 97
Cdd:MTH00188 86 SDYVSSLNLIKC 97
ND4L MTH00149
NADH dehydrogenase subunit 4L; Provisional
 1-92 1.78e-08

NADH dehydrogenase subunit 4L; Provisional


Pssm-ID: 214434  Cd Length: 97  Bit Score: 47.53  E-value: 1.78e-08
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 326370444  1 MYMFSIFTSLSIYFAGIYIFSFKRKHLLMVLLSLEYIVLSLFLLVVVFLISFDYDYFFPVVFLVFSVCEGALGLSILVSM 80
Cdd:MTH00149  1 SMFMLLLLSLFGFLMGVFALLFQYKHLLSILLSLEALMLSLLVMMFSSSGLISFSSYLFLIILTFGACEASLGLSLLVSL 80

                        90
                ....*....|..
gi 326370444 81 IRSHGNDFFNSF 92
Cdd:MTH00149 81 IRLHGNDYVSSL 92
ND4L MTH00013
NADH dehydrogenase subunit 4L; Validated
 2-97 3.86e-08

NADH dehydrogenase subunit 4L; Validated


Pssm-ID: 133655  Cd Length: 97  Bit Score: 46.67  E-value: 3.86e-08
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 326370444  2 YMFSIFTSLSIYFAGIYIFSFKRKHLLMVLLSLE-YIVLSLFLLVVVFLISFDYDYFFPVVFLVFSVCEGALGLSILVSM 80
Cdd:MTH00013  1 MMSPLFILSISPFISMFNLSLQRKHLLMSLLSLEaMILSLALFIPLSLMFANQVNGMLAIVLLTFGACEASLGLSLLVLM 80

                        90
                ....*....|....*..
gi 326370444 81 IRSHGNDFFNSFFLSLC 97
Cdd:MTH00013 81 TRSYGNDMLKSLTSNKC 97
ND4L MTH00125
NADH dehydrogenase subunit 4L; Provisional
 3-97 4.28e-08

NADH dehydrogenase subunit 4L; Provisional


Pssm-ID: 177184  Cd Length: 98  Bit Score: 46.38  E-value: 4.28e-08
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 326370444  3 MFSIFTSLSIYFA-GIYIFSFKRKHLLMVLLSLEYIVLSLFLLVVVFLISFDYDYFF--PVVFLVFSVCEGALGLSILVS 79
Cdd:MTH00125  1 MTPTHFSLYTAFMlSLLGLSFHRTHLMSALLCLESMMLSLFIMLSLWPITTQTPSFTpmPIILLTFSACEAGTGLALLVA 80

                        90
                ....*....|....*...
gi 326370444 80 MIRSHGNDFFNSFFLSLC 97
Cdd:MTH00125 81 TTRTHGSDHLKNLNLLQC 98
ND4L MTH00067
NADH dehydrogenase subunit 4L; Provisional
 6-97 1.72e-07

NADH dehydrogenase subunit 4L; Provisional


Pssm-ID: 177139  Cd Length: 98  Bit Score: 44.98  E-value: 1.72e-07
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 326370444  6 IFTSLSIYFAGIYIFSFKRKHLLMVLLSLEYIVLSLFLLVVVFLISFDYDYFF--PVVFLVFSVCEGALGLSILVSMIRS 83
Cdd:MTH00067  5 YFTFYSAFLLGLMGLAFHRTHLLSALLCLEGMMLSLFIALSLWSTQFESLSYFslPMFMLTFSACEASTGLALMVATTRT 84

                        90
                ....*....|....
gi 326370444 84 HGNDFFNSFFLSLC 97
Cdd:MTH00067 85 HGTDHLKNLNLLQC 98
ND4L MTH00126
NADH dehydrogenase subunit 4L; Provisional
 7-97 2.63e-07

NADH dehydrogenase subunit 4L; Provisional


Pssm-ID: 177185  Cd Length: 98  Bit Score: 44.57  E-value: 2.63e-07
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 326370444  7 FTSLSIYFAGIYIFSFKRKHLLMVLLSLEYIVLSLFLLVVVFLISFDYDYFF--PVVFLVFSVCEGALGLSILVSMIRSH 84
Cdd:MTH00126  6 FSFSSAFILGLMGLAFHRTHLLSALLCLEGMMLSLFIALSLWALQLESTSFSaaPMLLLAFSACEASAGLALLVATARTH 85

                        90
                ....*....|...
gi 326370444 85 GNDFFNSFFLSLC 97
Cdd:MTH00126 86 GTDRLQNLNLLQC 98
Oxidored_q2 pfam00420
NADH-ubiquinone/plastoquinone oxidoreductase chain 4L;
4-94 1.23e-05

NADH-ubiquinone/plastoquinone oxidoreductase chain 4L;


Pssm-ID: 425672  Cd Length: 95  Bit Score: 40.24  E-value: 1.23e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 326370444   4 FSIFTSLSIYFAGIYIFSFkRKHLLMVLLSLEYIVLSLFLLVVVFLISFDYDY--FFPVVFLVFSVCEGALGLSILVSMI 81
Cdd:pfam00420  1 AYLLLSGLLFLIGLYGLLL-RRNLLRVLLSLELMLNAVNLALVLFGRLTADPLpqALILTAIVIAAAEAAVGLALLVRIY 79

                         90
                 ....*....|...
gi 326370444  82 RSHGNDFFNSFFL 94
Cdd:pfam00420 80 RTHGTDDVDSLNL 92
ND4L MTH00181
NADH dehydrogenase subunit 4L; Provisional
 7-95 6.72e-05

NADH dehydrogenase subunit 4L; Provisional


Pssm-ID: 214450  Cd Length: 93  Bit Score: 38.00  E-value: 6.72e-05
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 326370444  7 FTSLSIYFAGIYIFSFKRKHLLMVLLSLEYIVLSLFLLVVVFLISFDY--DYFFPVVFLVFSVCEGALGLSILVSMIRSH 84
Cdd:MTH00181  3 FVFISAFILLLLGLSLYKTHLLSLLLCLEGMMLFLFLLLALFSLLSSSssMLMFGLILLTFSACEAVLGLSLLVATNRTH 82

                        90
                ....*....|.
gi 326370444 85 GNDFFNSFFLS 95
Cdd:MTH00181 83 GSDHLLKFNLL 93
ND4L MTH00107
NADH dehydrogenase subunit 4L; Provisional
 4-97 2.25e-04

NADH dehydrogenase subunit 4L; Provisional


Pssm-ID: 177169  Cd Length: 98  Bit Score: 36.83  E-value: 2.25e-04
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 326370444  4 FSIFTSLSIYFAGIYIFsfkRKHLLMVLLSLEYIVLSLFLLVVVFLISFDYD--YFFPVVFLVFSVCEGALGLSILVSMI 81
Cdd:MTH00107  6 MNIMLAFTISLLGLLMY---RSHLMSSLLCLEGMMLSLFIMATLTILNTHFTlaSMMPIILLVFAACEAAVGLALLVMVS 82

                        90
                ....*....|....*.
gi 326370444 82 RSHGNDFFNSFFLSLC 97
Cdd:MTH00107 83 NTYGTDYVQNLNLLQC 98
ND4L MTH00043
NADH dehydrogenase subunit 4L; Validated
 3-91 4.02e-04

NADH dehydrogenase subunit 4L; Validated


Pssm-ID: 214410  Cd Length: 98  Bit Score: 36.05  E-value: 4.02e-04
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 326370444  3 MFSIFTSLSIYFAGIYIFSFKRKHLLMVLLSLEYIVLSLFLLVVVFLISFDYDYF--FPVVFLVFSVCEGALGLSILVSM 80
Cdd:MTH00043  2 NIILIIILSSFFLGLLGILINRLHLLSILLCLELLLISLFLNISIWSLNYGNFSNlsFSLLLLTLSACEASIGLSLMVLL 81

                        90
                ....*....|.
gi 326370444 81 IRSHGNDFFNS 91
Cdd:MTH00043 82 SRNHNSDLVAS 92
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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