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Conserved domains on  [gi|325647|gb|AAB00742|]
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rev protein [Human immunodeficiency virus 2]

Protein Classification

rev protein( domain architecture ID 10450461)

HIV-1 rev protein escorts unspliced or incompletely spliced viral pre-mRNAs (late transcripts) out of the nucleus of infected cells

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
REV pfam00424
REV protein (anti-repression trans-activator protein);
1-89 1.50e-32

REV protein (anti-repression trans-activator protein);


:

Pssm-ID: 366091  Cd Length: 91  Bit Score: 108.89  E-value: 1.50e-32
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 325647       1 MSERAD--EEGLQGKLRLLRLLHQTNPYPQGPGTASQRRNRRRRRRRQWLRLVALANKLCAVPDPPTDSPLDRAIQHLQR 78
Cdd:pfam00424   1 MAGRSGdsDEGLQGKVRLIKLLYQSNPPPNPEGTRQARRNRRRRWRERQRQIHSISERILATYLGRSAEPVPLQLPPLER 80

                          90
                  ....*....|.
gi 325647      79 LTIQELPDPPT 89
Cdd:pfam00424  81 LTLDCNEDCGT 91
 
Name Accession Description Interval E-value
REV pfam00424
REV protein (anti-repression trans-activator protein);
1-89 1.50e-32

REV protein (anti-repression trans-activator protein);


Pssm-ID: 366091  Cd Length: 91  Bit Score: 108.89  E-value: 1.50e-32
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 325647       1 MSERAD--EEGLQGKLRLLRLLHQTNPYPQGPGTASQRRNRRRRRRRQWLRLVALANKLCAVPDPPTDSPLDRAIQHLQR 78
Cdd:pfam00424   1 MAGRSGdsDEGLQGKVRLIKLLYQSNPPPNPEGTRQARRNRRRRWRERQRQIHSISERILATYLGRSAEPVPLQLPPLER 80

                          90
                  ....*....|.
gi 325647      79 LTIQELPDPPT 89
Cdd:pfam00424  81 LTLDCNEDCGT 91
 
Name Accession Description Interval E-value
REV pfam00424
REV protein (anti-repression trans-activator protein);
1-89 1.50e-32

REV protein (anti-repression trans-activator protein);


Pssm-ID: 366091  Cd Length: 91  Bit Score: 108.89  E-value: 1.50e-32
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 325647       1 MSERAD--EEGLQGKLRLLRLLHQTNPYPQGPGTASQRRNRRRRRRRQWLRLVALANKLCAVPDPPTDSPLDRAIQHLQR 78
Cdd:pfam00424   1 MAGRSGdsDEGLQGKVRLIKLLYQSNPPPNPEGTRQARRNRRRRWRERQRQIHSISERILATYLGRSAEPVPLQLPPLER 80

                          90
                  ....*....|.
gi 325647      79 LTIQELPDPPT 89
Cdd:pfam00424  81 LTLDCNEDCGT 91
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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