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Conserved domains on  [gi|325511079|gb|ADZ22715|]
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ABC-type sugar transport system, permease component [Clostridium acetobutylicum EA 2018]

Protein Classification

carbohydrate ABC transporter permease( domain architecture ID 10003067)

carbohydrate ABC transporter permease is the transmembrane (TM) subunit of a periplasmic binding protein (PBP)-dependent ATP-binding cassette (ABC) transporter responsible for the translocation across the membrane of one or more from a variety of carbohydrate substrates including trehalose, lactose, arabinose, and maltodextrin

Gene Ontology:  GO:0042626|GO:0140359|GO:0008643|GO:0055085
PubMed:  25750732|24638992|30626703
TCDB:  3.A.1.1.-

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
UgpA COG1175
ABC-type sugar transport system, permease component [Carbohydrate transport and metabolism];
1-273 1.11e-66

ABC-type sugar transport system, permease component [Carbohydrate transport and metabolism];


:

Pssm-ID: 440788 [Multi-domain]  Cd Length: 298  Bit Score: 209.99  E-value: 1.11e-66
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 325511079   1 MNSSVQESGISRFVNRYWR-LLFVLPMAILYLIFFMYPLIQGIFISFTNWDGLSKVKRFIGLKNYIGLFNDNDFSKSISF 79
Cdd:COG1175    1 MTTTTSAAARRRRRRRRLAaYLFLLPALLLLLVFVLYPLLYTLYLSFTDWNLLGPPPEFVGLDNYARLFTDPRFWNALGN 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 325511079  80 TVELTIVLIVFEIIIGLGIAILLERKIKFNSFFRTAYFFPAVLSGMTVSLIFSQIF--QYG-IPEVGNAFNINPFklNPL 156
Cdd:COG1175   81 TLLFTVVSVPLQLVLGLLLALLLNRKLRGRGFFRTLFFLPWVISPVVVALIWKWLFnpDYGlLNALLGALGLEPI--NWL 158

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 325511079 157 SNHTGAFIAIAFVMLWQGVALPILLFLAGLMSVPRDIIEAASVDGATPMQVFFKIKLPFLLPTLSIVFILALKSGLLAFD 236
Cdd:COG1175  159 GDPSLALPAVIIVTVWKGTGFNMLIFLAGLQSIPRELYEAARIDGASPWQRFRRITLPLLRPTILFVLVLSTIGALQVFD 238

                        250       260       270
                 ....*....|....*....|....*....|....*....
gi 325511079 237 QIVALTYGSVD--TQSIGLLLYNDAVSSFRFGYANSMGT 273
Cdd:COG1175  239 LVYVLTGGGPGnsTTTLVLYIYQTAFQQFDFGYASAIAV 277
 
Name Accession Description Interval E-value
UgpA COG1175
ABC-type sugar transport system, permease component [Carbohydrate transport and metabolism];
1-273 1.11e-66

ABC-type sugar transport system, permease component [Carbohydrate transport and metabolism];


Pssm-ID: 440788 [Multi-domain]  Cd Length: 298  Bit Score: 209.99  E-value: 1.11e-66
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 325511079   1 MNSSVQESGISRFVNRYWR-LLFVLPMAILYLIFFMYPLIQGIFISFTNWDGLSKVKRFIGLKNYIGLFNDNDFSKSISF 79
Cdd:COG1175    1 MTTTTSAAARRRRRRRRLAaYLFLLPALLLLLVFVLYPLLYTLYLSFTDWNLLGPPPEFVGLDNYARLFTDPRFWNALGN 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 325511079  80 TVELTIVLIVFEIIIGLGIAILLERKIKFNSFFRTAYFFPAVLSGMTVSLIFSQIF--QYG-IPEVGNAFNINPFklNPL 156
Cdd:COG1175   81 TLLFTVVSVPLQLVLGLLLALLLNRKLRGRGFFRTLFFLPWVISPVVVALIWKWLFnpDYGlLNALLGALGLEPI--NWL 158

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 325511079 157 SNHTGAFIAIAFVMLWQGVALPILLFLAGLMSVPRDIIEAASVDGATPMQVFFKIKLPFLLPTLSIVFILALKSGLLAFD 236
Cdd:COG1175  159 GDPSLALPAVIIVTVWKGTGFNMLIFLAGLQSIPRELYEAARIDGASPWQRFRRITLPLLRPTILFVLVLSTIGALQVFD 238

                        250       260       270
                 ....*....|....*....|....*....|....*....
gi 325511079 237 QIVALTYGSVD--TQSIGLLLYNDAVSSFRFGYANSMGT 273
Cdd:COG1175  239 LVYVLTGGGPGnsTTTLVLYIYQTAFQQFDFGYASAIAV 277
PRK10561 PRK10561
sn-glycerol-3-phosphate ABC transporter permease UgpA;
21-218 5.33e-18

sn-glycerol-3-phosphate ABC transporter permease UgpA;


Pssm-ID: 182550 [Multi-domain]  Cd Length: 280  Bit Score: 81.80  E-value: 5.33e-18
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 325511079  21 LFVLPMAILYLIFFMYPLIQGIFISFTNWDGLSKVKRFIGLKNYIGLFNDNDFSKSISFTVELTIVLIVFEIIIGLGIAI 100
Cdd:PRK10561   1 LLVAPQLIITVIFFIWPAGEALWYSLQSVDPFGFSSQFVGLDNFVALFHDSYYLDSFWTTIKFSTLVTVSGLLVSLFFAA 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 325511079 101 LLERKIKFNSFFRTAYFFPAVLSGMTVSLIFSQIFQYGIPEVGNAFNINPFKLNPLSNHTGAFIAIAFVMLWQGVALPIL 180
Cdd:PRK10561  81 LVDYVVRGSRFYQTLMLLPYAVAPAVAAVLWIFLFNPGRGLITHFLAEFGYDWNHAQNSGQAMFLVVFASVWKQISYNFL 160

                        170       180       190
                 ....*....|....*....|....*....|....*...
gi 325511079 181 LFLAGLMSVPRDIIEAASVDGATPMQVFFKIKLPFLLP 218
Cdd:PRK10561 161 FFFAALQSIPRSLVEAAAIDGAGPIRRFFKLALPLIAP 198
TM_PBP2 cd06261
Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding ...
 108-268 3.95e-08

Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters which generally bind type 2 PBPs. These types of transporters consist of a PBP, two TMs, and two cytoplasmic ABC ATPase subunits, and are mainly involved in importing solutes from the environment. The solute is captured by the PBP which delivers it to a gated translocation pathway formed by the two TMs. The two ABCs bind and hydrolyze ATP and drive the transport reaction. For these transporters the ABCs and TMs are on independent polypeptide chains. These systems transport a diverse range of substrates. Most are specific for a single substrate or a group of related substrates; however some transporters are more promiscuous, transporting structurally diverse substrates such as the histidine/lysine and arginine transporter in Enterobacteriaceae. In the latter case, this is achieved through binding different PBPs with different specificities to the TMs. For other promiscuous transporters such as the multiple-sugar transporter Msm of Streptococcus mutans, the PBP has a wide substrate specificity. These transporters include the maltose-maltodextrin, phosphate and sulfate transporters, among others.


Pssm-ID: 119394 [Multi-domain]  Cd Length: 190  Bit Score: 52.28  E-value: 3.95e-08
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 325511079 108 FNSFFRTAYFFPAVLSGMTVSLIFSQIFQYGIpevgnafninpfklnplsNHTGAFIAIAFVMLWQGvALPILLFLAGLM 187
Cdd:cd06261   37 LRRIIDLLLSLPSLVLGLLLVLLFGVLLGWGI------------------LPGLGLPALILALLLIA-PFARLIRRAALE 97

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 325511079 188 SVPRDIIEAASVDGATPMQVFFKIKLPFLLPTLSIVFILALKSGLLAFDQIVALTYGSVDTQSIGLLLYNDAVSSFRFGY 267
Cdd:cd06261   98 SIPKDLVEAARALGASPWQIFRRIILPLALPPILTGLVLAFARALGEFALVSFLGGGEAPGPGTGLLLIFAILFPGDLGV 177


                 .
gi 325511079 268 A 268
Cdd:cd06261  178 A 178
PhnU2 TIGR03262
putative 2-aminoethylphosphonate ABC transporter, permease protein; [Transport and binding ...
 21-226 3.26e-04

putative 2-aminoethylphosphonate ABC transporter, permease protein; [Transport and binding proteins, Amino acids, peptides and amines]


Pssm-ID: 274495 [Multi-domain]  Cd Length: 546  Bit Score: 41.97  E-value: 3.26e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 325511079   21 LFVLPMAILYLIFFMYPLIQGIFISFTNWDGlskvkRFIGLKNYIGLFNDNDFSKSI--SFTVELTIVLIVFEIIIGLGI 98
Cdd:TIGR03262   5 LLLAGMILALLLFLLLPLLALLTKSVYDSDG-----DFIGLANFAEYFATPGLLQSLgnSLTVSAIVTAIVVPLAFAFAY 79

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 325511079   99 AILLERkIKFNSFFRTAYFFPAVLSGMTVSLIFSQIFqygipevGNAFNINP-FKLNPLSNHTGAFIAIAFVMLWQgvAL 177
Cdd:TIGR03262  80 ALTRSR-IPGKGAFRLVALLPLLAPSLLPAISLIYLF-------GNQGLLKGlLGGFSIYGFWGIVIGEVFYTFPH--AL 149

                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|...
gi 325511079  178 PILLflAGLMSVPRDIIEAASVDGATPMQVFFKIKLPF----LLPTLSIVFIL 226
Cdd:TIGR03262 150 MILV--TALSLADGRLYEAARAMGASPWRTFFTVTLPGakygLISAAFVVFTL 200
BPD_transp_1 pfam00528
Binding-protein-dependent transport system inner membrane component; The alignments cover the ...
 162-235 8.67e-04

Binding-protein-dependent transport system inner membrane component; The alignments cover the most conserved region of the proteins, which is thought to be located in a cytoplasmic loop between two transmembrane domains. The members of this family have a variable number of transmembrane helices.


Pssm-ID: 334128 [Multi-domain]  Cd Length: 183  Bit Score: 39.59  E-value: 8.67e-04
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 325511079  162 AFIAIAFVMLWQGVALPILLFLAGLMSVPRDIIEAASVDGATPMQVFFKIKLPFLLPTLSIVFILALKSGLLAF 235
Cdd:pfam00528  51 GILPAIILALLGWAGYARLIRRAALRSLPSDLVEAARALGASRWQIFRKIILPNALPPILTGLALAFGGALGGA 124
 
Name Accession Description Interval E-value
UgpA COG1175
ABC-type sugar transport system, permease component [Carbohydrate transport and metabolism];
1-273 1.11e-66

ABC-type sugar transport system, permease component [Carbohydrate transport and metabolism];


Pssm-ID: 440788 [Multi-domain]  Cd Length: 298  Bit Score: 209.99  E-value: 1.11e-66
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 325511079   1 MNSSVQESGISRFVNRYWR-LLFVLPMAILYLIFFMYPLIQGIFISFTNWDGLSKVKRFIGLKNYIGLFNDNDFSKSISF 79
Cdd:COG1175    1 MTTTTSAAARRRRRRRRLAaYLFLLPALLLLLVFVLYPLLYTLYLSFTDWNLLGPPPEFVGLDNYARLFTDPRFWNALGN 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 325511079  80 TVELTIVLIVFEIIIGLGIAILLERKIKFNSFFRTAYFFPAVLSGMTVSLIFSQIF--QYG-IPEVGNAFNINPFklNPL 156
Cdd:COG1175   81 TLLFTVVSVPLQLVLGLLLALLLNRKLRGRGFFRTLFFLPWVISPVVVALIWKWLFnpDYGlLNALLGALGLEPI--NWL 158

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 325511079 157 SNHTGAFIAIAFVMLWQGVALPILLFLAGLMSVPRDIIEAASVDGATPMQVFFKIKLPFLLPTLSIVFILALKSGLLAFD 236
Cdd:COG1175  159 GDPSLALPAVIIVTVWKGTGFNMLIFLAGLQSIPRELYEAARIDGASPWQRFRRITLPLLRPTILFVLVLSTIGALQVFD 238

                        250       260       270
                 ....*....|....*....|....*....|....*....
gi 325511079 237 QIVALTYGSVD--TQSIGLLLYNDAVSSFRFGYANSMGT 273
Cdd:COG1175  239 LVYVLTGGGPGnsTTTLVLYIYQTAFQQFDFGYASAIAV 277
PRK10561 PRK10561
sn-glycerol-3-phosphate ABC transporter permease UgpA;
21-218 5.33e-18

sn-glycerol-3-phosphate ABC transporter permease UgpA;


Pssm-ID: 182550 [Multi-domain]  Cd Length: 280  Bit Score: 81.80  E-value: 5.33e-18
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 325511079  21 LFVLPMAILYLIFFMYPLIQGIFISFTNWDGLSKVKRFIGLKNYIGLFNDNDFSKSISFTVELTIVLIVFEIIIGLGIAI 100
Cdd:PRK10561   1 LLVAPQLIITVIFFIWPAGEALWYSLQSVDPFGFSSQFVGLDNFVALFHDSYYLDSFWTTIKFSTLVTVSGLLVSLFFAA 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 325511079 101 LLERKIKFNSFFRTAYFFPAVLSGMTVSLIFSQIFQYGIPEVGNAFNINPFKLNPLSNHTGAFIAIAFVMLWQGVALPIL 180
Cdd:PRK10561  81 LVDYVVRGSRFYQTLMLLPYAVAPAVAAVLWIFLFNPGRGLITHFLAEFGYDWNHAQNSGQAMFLVVFASVWKQISYNFL 160

                        170       180       190
                 ....*....|....*....|....*....|....*...
gi 325511079 181 LFLAGLMSVPRDIIEAASVDGATPMQVFFKIKLPFLLP 218
Cdd:PRK10561 161 FFFAALQSIPRSLVEAAAIDGAGPIRRFFKLALPLIAP 198
LplB COG4209
ABC-type polysaccharide transport system, permease component [Carbohydrate transport and ...
 8-268 1.04e-17

ABC-type polysaccharide transport system, permease component [Carbohydrate transport and metabolism];


Pssm-ID: 443357 [Multi-domain]  Cd Length: 316  Bit Score: 81.68  E-value: 1.04e-17
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 325511079   8 SGISRFVNRYWRL-LFVLPMAILYLIFFMYPLIqGIFISFTN---WDGLSKVKrFIGLKNYIGLFNDNDFSKSISFTVEL 83
Cdd:COG4209   17 KSFLKRLKRDWQLyLMLLPGLIYLLIFSYLPMY-GIVIAFKDynpFKGIFGSP-WVGLKNFKFLFSSPDFWRVLRNTLLI 94

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 325511079  84 TIVLIVF-------------EIiiglgiailleRKIKFNSFFRTAYFFPAVLSGMTVSLIFSQIFQYG---IPEVGNAFN 147
Cdd:COG4209   95 SLLKLVFgfplpiilalllnEL-----------RSKRFKKTVQTISYLPHFLSWVVVAGIVYQFLSPDtglVNQLLRALG 163

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 325511079 148 INPFklnPLSNHTGAFIAIA-FVMLWQGVALPILLFLAGLMSVPRDIIEAASVDGATPMQVFFKIKLPFLLPTLSIVFIL 226
Cdd:COG4209  164 GEPI---NFLTEPKYFRPIYvFSGIWKEAGWGSIIYLAAITGIDPELYEAAAIDGAGRWQQIWHITLPGIRPTIVILLIL 240

                        250       260       270       280
                 ....*....|....*....|....*....|....*....|....*...
gi 325511079 227 ALkSGLLA--FDQIV----ALTYGSVDTqsIGLLLYNDAVSSFRFGYA 268
Cdd:COG4209  241 NI-GNILNvgFEQIYllynPLNYSTSDV--IDTYVYRIGLQNGDYSYA 285
PotB COG1176
ABC-type spermidine/putrescine transport system, permease component I [Amino acid transport ...
 16-273 1.82e-12

ABC-type spermidine/putrescine transport system, permease component I [Amino acid transport and metabolism];


Pssm-ID: 440789 [Multi-domain]  Cd Length: 287  Bit Score: 66.32  E-value: 1.82e-12
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 325511079  16 RYWRLLFVLPMAILYLIFFMYPLIQGIFISFTNWDGLSKVKRFIGLKNYIGLFNDNDFSKSISFTVELTIV--------- 86
Cdd:COG1176    8 RLRPLLLLLPALLWLLLFFVLPLLLLLVYSFTTRDPYGGVVPGFTLENYARLFTDPLYLKVLLRTLWIALLttliclllg 87

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 325511079  87 -----LIVFeiiiglgiailleRKIKFNSFFRTAYFFPAVLSGMTVSLIFSQIFQYG--IPEVGNAFNINPFKLNPLSNH 159
Cdd:COG1176   88 ypiayFLAR-------------APPRWRNLLLLLVILPFWTSFLVRTYAWIVLLGRNglLNSLLLALGLIDEPLRLLYTE 154

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 325511079 160 TGAFIAIAFVMLwqgvALPILLFLAGLMSVPRDIIEAASVDGATPMQVFFKIKLPFLLPTL----SIVFILALksGLLAF 235
Cdd:COG1176  155 FAVVIGLVYVYL----PFMVLPLYAALEKIDPSLLEAARDLGASPWQTFRRVILPLSLPGIiagsLLVFIPAL--GAFVT 228

                        250       260       270
                 ....*....|....*....|....*....|....*...
gi 325511079 236 DQIValtyGSVDTQSIGLLLYNDAVSSFRFGYANSMGT 273
Cdd:COG1176  229 PALL----GGGKVLMIGNLIYQQFLSALNWPLAAALAV 262
TM_PBP2 cd06261
Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding ...
 108-268 3.95e-08

Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters which generally bind type 2 PBPs. These types of transporters consist of a PBP, two TMs, and two cytoplasmic ABC ATPase subunits, and are mainly involved in importing solutes from the environment. The solute is captured by the PBP which delivers it to a gated translocation pathway formed by the two TMs. The two ABCs bind and hydrolyze ATP and drive the transport reaction. For these transporters the ABCs and TMs are on independent polypeptide chains. These systems transport a diverse range of substrates. Most are specific for a single substrate or a group of related substrates; however some transporters are more promiscuous, transporting structurally diverse substrates such as the histidine/lysine and arginine transporter in Enterobacteriaceae. In the latter case, this is achieved through binding different PBPs with different specificities to the TMs. For other promiscuous transporters such as the multiple-sugar transporter Msm of Streptococcus mutans, the PBP has a wide substrate specificity. These transporters include the maltose-maltodextrin, phosphate and sulfate transporters, among others.


Pssm-ID: 119394 [Multi-domain]  Cd Length: 190  Bit Score: 52.28  E-value: 3.95e-08
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 325511079 108 FNSFFRTAYFFPAVLSGMTVSLIFSQIFQYGIpevgnafninpfklnplsNHTGAFIAIAFVMLWQGvALPILLFLAGLM 187
Cdd:cd06261   37 LRRIIDLLLSLPSLVLGLLLVLLFGVLLGWGI------------------LPGLGLPALILALLLIA-PFARLIRRAALE 97

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 325511079 188 SVPRDIIEAASVDGATPMQVFFKIKLPFLLPTLSIVFILALKSGLLAFDQIVALTYGSVDTQSIGLLLYNDAVSSFRFGY 267
Cdd:cd06261   98 SIPKDLVEAARALGASPWQIFRRIILPLALPPILTGLVLAFARALGEFALVSFLGGGEAPGPGTGLLLIFAILFPGDLGV 177


                 .
gi 325511079 268 A 268
Cdd:cd06261  178 A 178
malG PRK10998
maltose ABC transporter permease MalG;
118-227 4.77e-08

maltose ABC transporter permease MalG;


Pssm-ID: 182891  Cd Length: 296  Bit Score: 53.17  E-value: 4.77e-08
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 325511079 118 FPAVLSGMTVSLIFSQIFQYgIPEVGnafninpfklnpLSNHTGAFIAIAfvmlwQGVALPILLFLAGLMSVPRDIIEAA 197
Cdd:PRK10998 131 FPAVLSLVALYALFDRLGQY-IPFIG------------LNTHGGVIFAYL-----GGIALHVWTIKGYFETIDSSLEEAA 192

                         90       100       110
                 ....*....|....*....|....*....|
gi 325511079 198 SVDGATPMQVFFKIKLPFLLPTLSIVFILA 227
Cdd:PRK10998 193 ALDGATPWQAFRLVLLPLSVPILAVVFILS 222
FbpB COG1178
ABC-type Fe3+ transport system, permease component [Inorganic ion transport and metabolism];
11-228 5.10e-08

ABC-type Fe3+ transport system, permease component [Inorganic ion transport and metabolism];


Pssm-ID: 440791 [Multi-domain]  Cd Length: 538  Bit Score: 53.63  E-value: 5.10e-08
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 325511079  11 SRFVNRYWRLLFVLPMAILyLIFFMYPLIQGIFISFTNwdglskvkrfiGLKNYIGLFNDNDFSKSISFTVELTIVLIVF 90
Cdd:COG1178    2 STRPRRRPRLLLLLLALLL-ALLVLLPLLALLLRAFTD-----------GLANFWALLSDPYLWRALGNTLLLALLVTLL 69

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 325511079  91 EIIIGLGIAILLER-KIKFNSFFRTAYFFPAVLSGMTVSLIFSQIFQYGIPevGNAFNINPFKLNPLSNHTgaFIAIAFV 169
Cdd:COG1178   70 SLLLGVPLAWLLARtDFPGRRLLRWLLLLPLALPPYVVALAWIALFGPNGL--LNTLLRALFGLEPPDIYG--LGGIILV 145

                        170       180       190       200       210       220
                 ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 325511079 170 MLWQGVALPILLFLAGLMSVPRDIIEAASVDGATPMQVFFKIKLPFLLPTL----SIVFILAL 228
Cdd:COG1178  146 LVLFNYPYVYLLLRAALRSIDASLEEAARSLGASPWRAFRRVTLPLLRPAIaagaLLVFLLCL 208
UgpE COG0395
ABC-type glycerol-3-phosphate transport system, permease component [Carbohydrate transport and ...
 163-227 6.23e-08

ABC-type glycerol-3-phosphate transport system, permease component [Carbohydrate transport and metabolism];


Pssm-ID: 440164 [Multi-domain]  Cd Length: 282  Bit Score: 52.79  E-value: 6.23e-08
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 325511079 163 FIAIAFVMLWQGVALPILLFLAGLMSVPRDIIEAASVDGATPMQVFFKIKLPFLLPTLSIVFILA 227
Cdd:COG0395  144 YWGLILPYLAFGLPFGIFLLRQFFRSIPRELEEAARIDGASEFRIFWRIVLPLSKPALATVAIFT 208
MalG COG3833
ABC-type maltose transport system, permease component MalG [Carbohydrate transport and ...
 11-227 1.18e-07

ABC-type maltose transport system, permease component MalG [Carbohydrate transport and metabolism];


Pssm-ID: 443045 [Multi-domain]  Cd Length: 282  Bit Score: 52.08  E-value: 1.18e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 325511079  11 SRFVNRYWRLLFVLPMAILYLIFFMYPLIQGIFISFTNWDGLSKVKRF---IGLKNYIGLFNDNDFSKSISFTVELTIVL 87
Cdd:COG3833    6 SRKRRRRLKLGLRHLVLIILAIIALFPILWVVSASFNPGGSLYSSSLIpenFTLENYKKLFTETPFLRWFLNSLIVAVVT 85

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 325511079  88 IVFEIIIGLGIAILLER-KIKFNSFFRTAY----FFPAVLSGMTVSLIFSQifqygipevgnafninpfkLNPLSNHTGa 162
Cdd:COG3833   86 AIISVFLAALAAYAFSRfRFKGRKAGLLALlllqMFPAFLALVALYLLLSA-------------------LGLLNTLLG- 145

                        170       180       190       200       210       220
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 325511079 163 fiaiaFVMLWQGVALPILLFLA-GLM-SVPRDIIEAASVDGATPMQVFFKIKLPFLLPTLSIVFILA 227
Cdd:COG3833  146 -----LILVYLGGAIPFNTWLMkGYFdTIPKELDEAAKIDGASHFQIFFRIILPLAKPILAVVALLS 207
PotC COG1177
ABC-type spermidine/putrescine transport system, permease component II [Amino acid transport ...
 15-239 2.85e-06

ABC-type spermidine/putrescine transport system, permease component II [Amino acid transport and metabolism];


Pssm-ID: 440790 [Multi-domain]  Cd Length: 262  Bit Score: 47.80  E-value: 2.85e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 325511079  15 NRYWRLLFVLpMAILYLIFFMYPLIQGIFISFTNWDGLSKVKRFIGLKNYIGLFNDNDFSKSISFTVE-------LTIVL 87
Cdd:COG1177    2 SRLGRLLLRL-FLALVLLFLYLPILVLVLYSFNDSWFLTFPPEGFTLRWYAELFSDPRLLDALLNSLLiallstlLATVL 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 325511079  88 IVFeiiiglGIAILLERKIKFNSFFRTAYFFPAVLSGMTVSLIFSQIFqygipevgNAFNINPfklnplsnhTGAFIAIA 167
Cdd:COG1177   81 GTP------AALALARYRFRGRRLLLALLLLPLVVPGIVLGVALLLLF--------SALGLSG---------GLWGLILA 137

                        170       180       190       200       210       220       230
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 325511079 168 FVMLwqGVALPILLFLAGLMSVPRDIIEAASVDGATPMQVFFKIKLPFLLPTLSIVFILALksgLLAFDQIV 239
Cdd:COG1177  138 HVVF--TLPFVVLVVLARLQGFDPSLEEAARDLGASPWQTFRRVTLPLIAPGILAGALLAF---TLSFDEFV 204
malF PRK10999
maltose ABC transporter permease MalF;
116-220 9.60e-06

maltose ABC transporter permease MalF;


Pssm-ID: 236816 [Multi-domain]  Cd Length: 520  Bit Score: 46.88  E-value: 9.60e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 325511079 116 YFFPAVLSgmtvSLIFSQIFQYGIPEVG----NAFNINPfklNPLSNHTGAFIAIAFVMLWQGVALPILLFLAGLMSVPR 191
Cdd:PRK10999 331 YAVPSFIS----ILIFKGLFNQSFGEINmmlsALFGIKP---AWFSDPTLAKTMILIVNTWLGYPYMMILCMGLLKAIPD 403

                         90       100
                 ....*....|....*....|....*....
gi 325511079 192 DIIEAASVDGATPMQVFFKIKLPFLLPTL 220
Cdd:PRK10999 404 DLYEASAMDGAGPFQNFFKITLPLLIKPL 432
FbpB COG1178
ABC-type Fe3+ transport system, permease component [Inorganic ion transport and metabolism];
18-273 1.47e-05

ABC-type Fe3+ transport system, permease component [Inorganic ion transport and metabolism];


Pssm-ID: 440791 [Multi-domain]  Cd Length: 538  Bit Score: 46.31  E-value: 1.47e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 325511079  18 WRLLFVLPMAILYLIFFMYPLIQGIFISFTNWDGLSkvkrfIGLKNYIGLFNDNDFSKSISFTVEL----TIVLIVFeii 93
Cdd:COG1178  286 WRWLALALCLLLVLLGLLLPLLALLLWSLTKALDDN-----LTLDNYRFVLLDPSLLRALLNSLLLallaALLAVLL--- 357

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 325511079  94 IGLGIAILLERKIKFNSFFRTAYFFPAVLSGMTVSLIFSQIFqygipevgnafniNPFKLNPLSNhTGAFIAIAFVMLWq 173
Cdd:COG1178  358 ALLLAYLVRRRRGRLARLLDRLAMLPYAVPGIVLGLGLLLLF-------------NRPLPLLLYG-TLAILVLAYVVRF- 422

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 325511079 174 gVALPILLFLAGLMSVPRDIIEAASVDGATPMQVFFKIKLPFLLPTL----SIVFILALKSglLAfdqiVALTYGSVDTQ 249
Cdd:COG1178  423 -LPFALRSLEAALAQIDPSLEEAARSLGASPLRTLRRVTLPLLRPGLlaaaLLVFVTSMKE--LS----ATLLLRPPGFE 495

                        250       260
                 ....*....|....*....|....
gi 325511079 250 SIGLLLYNdAVSSFRFGYANSMGT 273
Cdd:COG1178  496 TLAVLIYQ-LASSGRYGEAAALAL 518
PRK10952 PRK10952
proline/glycine betaine ABC transporter permease ProW;
176-220 2.35e-05

proline/glycine betaine ABC transporter permease ProW;


Pssm-ID: 236805  Cd Length: 355  Bit Score: 45.08  E-value: 2.35e-05
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|....*..
gi 325511079 176 ALP--ILLFLAGLMSVPRDIIEAASVDGATPMQVFFKIKLPFLLPTL 220
Cdd:PRK10952 219 ALPpiVRLTILGINQVPADLIEASRSFGASPRQMLFKVQLPLAMPTI 265
TauC COG0600
ABC-type nitrate/sulfonate/bicarbonate transport system, permease component [Inorganic ion ...
 164-220 2.92e-04

ABC-type nitrate/sulfonate/bicarbonate transport system, permease component [Inorganic ion transport and metabolism];


Pssm-ID: 440365 [Multi-domain]  Cd Length: 254  Bit Score: 41.67  E-value: 2.92e-04
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|....*...
gi 325511079 164 IAIAFVmlwqGVALPILL-FLAGLMSVPRDIIEAASVDGATPMQVFFKIKLPFLLPTL 220
Cdd:COG0600  129 IFVIFL----GAFFPILLnTAAGVRSVDPELLELARSLGASRWQILRKVVLPAALPYI 182
PhnU2 TIGR03262
putative 2-aminoethylphosphonate ABC transporter, permease protein; [Transport and binding ...
 21-226 3.26e-04

putative 2-aminoethylphosphonate ABC transporter, permease protein; [Transport and binding proteins, Amino acids, peptides and amines]


Pssm-ID: 274495 [Multi-domain]  Cd Length: 546  Bit Score: 41.97  E-value: 3.26e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 325511079   21 LFVLPMAILYLIFFMYPLIQGIFISFTNWDGlskvkRFIGLKNYIGLFNDNDFSKSI--SFTVELTIVLIVFEIIIGLGI 98
Cdd:TIGR03262   5 LLLAGMILALLLFLLLPLLALLTKSVYDSDG-----DFIGLANFAEYFATPGLLQSLgnSLTVSAIVTAIVVPLAFAFAY 79

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 325511079   99 AILLERkIKFNSFFRTAYFFPAVLSGMTVSLIFSQIFqygipevGNAFNINP-FKLNPLSNHTGAFIAIAFVMLWQgvAL 177
Cdd:TIGR03262  80 ALTRSR-IPGKGAFRLVALLPLLAPSLLPAISLIYLF-------GNQGLLKGlLGGFSIYGFWGIVIGEVFYTFPH--AL 149

                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|...
gi 325511079  178 PILLflAGLMSVPRDIIEAASVDGATPMQVFFKIKLPF----LLPTLSIVFIL 226
Cdd:TIGR03262 150 MILV--TALSLADGRLYEAARAMGASPWRTFFTVTLPGakygLISAAFVVFTL 200
CysU COG0555
ABC-type sulfate transport system, permease component [Inorganic ion transport and metabolism]; ...
 118-227 6.87e-04

ABC-type sulfate transport system, permease component [Inorganic ion transport and metabolism];


Pssm-ID: 440321 [Multi-domain]  Cd Length: 268  Bit Score: 40.50  E-value: 6.87e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 325511079 118 FPAVLSGMTVSLIFSQifqYGIpeVGNAFNinPFKLNPLSNHTGAFIAIAFVmlwqgvALPILL--FLAGLMSVPRDIIE 195
Cdd:COG0555  102 LPTAVAGIALLLLFGP---NGW--LGQLLA--PLGIKVAFTPLGIVLAQTFV------SLPFVVrtVQPVLEELDPELEE 168

                         90       100       110
                 ....*....|....*....|....*....|..
gi 325511079 196 AASVDGATPMQVFFKIKLPFLLPTLSIVFILA 227
Cdd:COG0555  169 AAATLGASRWQTFRRVILPLLLPALLTGFALA 200
BPD_transp_1 pfam00528
Binding-protein-dependent transport system inner membrane component; The alignments cover the ...
 162-235 8.67e-04

Binding-protein-dependent transport system inner membrane component; The alignments cover the most conserved region of the proteins, which is thought to be located in a cytoplasmic loop between two transmembrane domains. The members of this family have a variable number of transmembrane helices.


Pssm-ID: 334128 [Multi-domain]  Cd Length: 183  Bit Score: 39.59  E-value: 8.67e-04
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 325511079  162 AFIAIAFVMLWQGVALPILLFLAGLMSVPRDIIEAASVDGATPMQVFFKIKLPFLLPTLSIVFILALKSGLLAF 235
Cdd:pfam00528  51 GILPAIILALLGWAGYARLIRRAALRSLPSDLVEAARALGASRWQIFRKIILPNALPPILTGLALAFGGALGGA 124
PRK10973 PRK10973
sn-glycerol-3-phosphate ABC transporter permease UgpE;
172-226 3.72e-03

sn-glycerol-3-phosphate ABC transporter permease UgpE;


Pssm-ID: 182875 [Multi-domain]  Cd Length: 281  Bit Score: 38.18  E-value: 3.72e-03
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 325511079 172 WQGVALPIL-------LFLAGLMSVPRDIIEAASVDGATPMQVFFKIKLPFLLPTLSIVFIL 226
Cdd:PRK10973 145 YAGLTLPLMasatatfLFRQFFMTLPDELVEAARIDGASPMRFFWDIVLPLSKTNLAALFVI 206
PRK10782 PRK10782
D-methionine ABC transporter permease MetI;
186-220 8.03e-03

D-methionine ABC transporter permease MetI;


Pssm-ID: 182726  Cd Length: 217  Bit Score: 37.02  E-value: 8.03e-03
                         10        20        30
                 ....*....|....*....|....*....|....*
gi 325511079 186 LMSVPRDIIEAASVDGATPMQVFFKIKLPFLLPTL 220
Cdd:PRK10782 112 LLEIPTGLIEASRAMGATPMQIVRKVLLPEALPGL 146
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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