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Conserved domains on  [gi|325195578|emb|CCA28425|]
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hypothetical protein Psyr_2635 [Albugo laibachii Nc14]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
DUF2252 super family cl19860
Uncharacterized protein conserved in bacteria (DUF2252); This domain, found in various ...
 1-99 4.47e-20

Uncharacterized protein conserved in bacteria (DUF2252); This domain, found in various hypothetical bacterial proteins, has no known function.


The actual alignment was detected with superfamily member pfam10009:

Pssm-ID: 473235  Cd Length: 383  Bit Score: 82.70  E-value: 4.47e-20
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 325195578    1 MVAVRMLDHSFFIRELLPQDMKLELDELTEQEAMQAAAYLAKVVGNAHARqMDLATraawIRDLQSNRSETLDapSWLWS 80
Cdd:pfam10009 292 LGWTRLDGRSFYVRQLRPMKVSLDLELLDKDELQDYARLCGRALARAHAR-SDDAA----IIAGYLGRGDAFD--EALAD 364

                          90
                  ....*....|....*....
gi 325195578   81 SVVQLVGSHEQGYLEHCRR 99
Cdd:pfam10009 365 FAVAYADQVEADYAEFVRA 383
 
Name Accession Description Interval E-value
DUF2252 pfam10009
Uncharacterized protein conserved in bacteria (DUF2252); This domain, found in various ...
 1-99 4.47e-20

Uncharacterized protein conserved in bacteria (DUF2252); This domain, found in various hypothetical bacterial proteins, has no known function.


Pssm-ID: 462941  Cd Length: 383  Bit Score: 82.70  E-value: 4.47e-20
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 325195578    1 MVAVRMLDHSFFIRELLPQDMKLELDELTEQEAMQAAAYLAKVVGNAHARqMDLATraawIRDLQSNRSETLDapSWLWS 80
Cdd:pfam10009 292 LGWTRLDGRSFYVRQLRPMKVSLDLELLDKDELQDYARLCGRALARAHAR-SDDAA----IIAGYLGRGDAFD--EALAD 364

                          90
                  ....*....|....*....
gi 325195578   81 SVVQLVGSHEQGYLEHCRR 99
Cdd:pfam10009 365 FAVAYADQVEADYAEFVRA 383
 
Name Accession Description Interval E-value
DUF2252 pfam10009
Uncharacterized protein conserved in bacteria (DUF2252); This domain, found in various ...
 1-99 4.47e-20

Uncharacterized protein conserved in bacteria (DUF2252); This domain, found in various hypothetical bacterial proteins, has no known function.


Pssm-ID: 462941  Cd Length: 383  Bit Score: 82.70  E-value: 4.47e-20
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 325195578    1 MVAVRMLDHSFFIRELLPQDMKLELDELTEQEAMQAAAYLAKVVGNAHARqMDLATraawIRDLQSNRSETLDapSWLWS 80
Cdd:pfam10009 292 LGWTRLDGRSFYVRQLRPMKVSLDLELLDKDELQDYARLCGRALARAHAR-SDDAA----IIAGYLGRGDAFD--EALAD 364

                          90
                  ....*....|....*....
gi 325195578   81 SVVQLVGSHEQGYLEHCRR 99
Cdd:pfam10009 365 FAVAYADQVEADYAEFVRA 383
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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