|
Name |
Accession |
Description |
Interval |
E-value |
| IF4E |
pfam01652 |
Eukaryotic initiation factor 4E; |
74-227 |
6.99e-34 |
|
Eukaryotic initiation factor 4E;
Pssm-ID: 460281 Cd Length: 158 Bit Score: 127.26 E-value: 6.99e-34
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 325084226 74 KWILWYDTKKAINTtttesdgEYLQNVEKVGTFNTLKELKNLWDSLKTP--LEVIGNISIFKEGIEPAWEDSKNKDGGKI 151
Cdd:pfam01652 5 TWTLWYDTKPDKSK-------SYEDNLKKIGTFDTVEDFWSLYNHIKPPseLPPGSDYHLFKEGIKPMWEDPANKNGGKW 77
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 325084226 152 SVNyLKDNGDFSKVfnaWFTLFTTIVYTTFENY-EQSNGIVLSIRGWGASISLWNGSAE-QDKVQSIKESFHNILSIK 227
Cdd:pfam01652 78 IIR-LKKKGLLDRL---WEDLLLALIGEQFDEDsDEICGAVVSVRKKEDKISIWTRDASdEEAVLKIGKKLKEVLGLP 151
|
|
| CDC33 |
COG5053 |
Translation initiation factor 4E (eIF-4E) [Translation, ribosomal structure and biogenesis]; |
63-245 |
1.75e-14 |
|
Translation initiation factor 4E (eIF-4E) [Translation, ribosomal structure and biogenesis];
Pssm-ID: 227386 Cd Length: 217 Bit Score: 73.39 E-value: 1.75e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 325084226 63 DSKNLEETLP--EKWILWYDTKkaiNTTTTESDGEYLQNVekvGTFNTLKELKNLWDSLKTP--LEVIGNISIFKEGIEP 138
Cdd:COG5053 29 DSAHFMNKHPlaFHWTLWFLKP---PEDGLESWSDLLKSI---ITFETVEEFWYILHNISDAsrLPRKSDYNVFREGIRP 102
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 325084226 139 AWEDSKNKDGGKISVNYLKDNGDfsKVFNAWFTLFTTIVYTTFENYEQS-NGIVLSIRGWGASISLWNGSAE-QDKVQSI 216
Cdd:COG5053 103 EWEDEANMNGGKWSFQLKGKGCD--RLDELWLRTLLAAIGETLDPTGSEiGGVVGNMRKGFYKLAIWTRNCNnKDVLGAI 180
|
170 180 190
....*....|....*....|....*....|..
gi 325084226 217 KESFHNILSIKYS---KYSVHKAAILFKNNKK 245
Cdd:COG5053 181 GNEFKQVLELSDVetlEYKAHESSKLGSYHAK 212
|
|
| PTZ00040 |
PTZ00040 |
translation initiation factor E4; Provisional |
66-218 |
1.54e-12 |
|
translation initiation factor E4; Provisional
Pssm-ID: 240238 Cd Length: 233 Bit Score: 67.91 E-value: 1.54e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 325084226 66 NLEETLP--EKWILWydtkKAINTTTTESDGEYLQNVEKVGTFNTLKELKNLWDSLKTPLE-----------------VI 126
Cdd:PTZ00040 33 PLSTPLPlsYKWVIW----EQVVKETIRKSNDYKDYTKPLASFDSVQKFWQLWFNIPQPSElltgkrmiressdgsehVV 108
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 325084226 127 GNISIFKEGIEPAWEDSKNKDGGKISVNYLKDNGDFSKVFNAWFTLFTTIVYTTFENYEQSNGI----VLSIRGWGASIS 202
Cdd:PTZ00040 109 DAVMIFKDGIQPMWEDPMNATGGHFEYRFWPTDVSPGQIDEYWNNLVLALIGSSLEHSSLINGIrlvdKLSGRFGVIRIE 188
|
170
....*....|....*...
gi 325084226 203 LW--NGSAEQDKVQSIKE 218
Cdd:PTZ00040 189 IWftNLGDQSDRNQLMKE 206
|
|
| rne |
PRK10811 |
ribonuclease E; Reviewed |
523-650 |
8.45e-06 |
|
ribonuclease E; Reviewed
Pssm-ID: 236766 [Multi-domain] Cd Length: 1068 Bit Score: 49.65 E-value: 8.45e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 325084226 523 PEPIAPAPVKKVEPTPTPAPVKKVEPTPAPAKKVEqqpiETQPESFSKVAKKdksyknknQPQPVssswSAQGLSIAELI 602
Cdd:PRK10811 879 VEPVVSAPVVEAVAEVVEEPVVVAEPQPEEVVVVE----TTHPEVIAAPVTE--------QPQVI----TESDVAVAQEV 942
|
90 100 110 120
....*....|....*....|....*....|....*....|....*...
gi 325084226 603 AKQPEPVVSSTPTPSVVEQISATTTVNIVKVETAPSAPSAPSTTPEPV 650
Cdd:PRK10811 943 AEHAEPVVEPQDETADIEEAAETAEVVVAEPEVVAQPAAPVVAEVAAE 990
|
|
| PTZ00449 |
PTZ00449 |
104 kDa microneme/rhoptry antigen; Provisional |
673-795 |
5.31e-03 |
|
104 kDa microneme/rhoptry antigen; Provisional
Pssm-ID: 185628 [Multi-domain] Cd Length: 943 Bit Score: 40.44 E-value: 5.31e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 325084226 673 TDEWKSVEKKTKtaKKISNDKEkkENITNNKGPQdnllirnlivEEPLEYLSPVKQPQKKQSKESSKEQPKSKEQPKEQS 752
Cdd:PTZ00449 482 TQEIKKLIKKSK--KKLAPIEE--EDSDKHDEPP----------EGPEASGLPPKAPGDKEGEEGEHEDSKESDEPKEGG 547
|
90 100 110 120
....*....|....*....|....*....|....*....|...
gi 325084226 753 KPKEQPKETNTVKKTSKKQTEVTKTTTSNNKPNNKSVTQNTKD 795
Cdd:PTZ00449 548 KPGETKEGEVGKKPGPAKEHKPSKIPTLSKKPEFPKDPKHPKD 590
|
|
| Stm1_N |
pfam09598 |
Stm1; This region is found at the N terminal of the Stm1 protein. Stm1 is a G4 quadraplex and ... |
521-556 |
7.46e-03 |
|
Stm1; This region is found at the N terminal of the Stm1 protein. Stm1 is a G4 quadraplex and purine motif triplex nucleic acid-binding protein. It has been implicated in many biological processes including apoptosis and telomere biosynthesis. Stm1 is known to interact with CDC13, and is known to associate with ribosomes and nuclear telomere cap complexes.
Pssm-ID: 430706 Cd Length: 64 Bit Score: 35.78 E-value: 7.46e-03
10 20 30
....*....|....*....|....*....|....*.
gi 325084226 521 EDPEPIAPAPVKKVEPTPTPAPVKKVEPTPAPAKKV 556
Cdd:pfam09598 16 EDPSQREPAPPTKAVDKPTARTAKRPAKPEPPAQAV 51
|
|
|
|
Name |
Accession |
Description |
Interval |
E-value |
| IF4E |
pfam01652 |
Eukaryotic initiation factor 4E; |
74-227 |
6.99e-34 |
|
Eukaryotic initiation factor 4E;
Pssm-ID: 460281 Cd Length: 158 Bit Score: 127.26 E-value: 6.99e-34
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 325084226 74 KWILWYDTKKAINTtttesdgEYLQNVEKVGTFNTLKELKNLWDSLKTP--LEVIGNISIFKEGIEPAWEDSKNKDGGKI 151
Cdd:pfam01652 5 TWTLWYDTKPDKSK-------SYEDNLKKIGTFDTVEDFWSLYNHIKPPseLPPGSDYHLFKEGIKPMWEDPANKNGGKW 77
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 325084226 152 SVNyLKDNGDFSKVfnaWFTLFTTIVYTTFENY-EQSNGIVLSIRGWGASISLWNGSAE-QDKVQSIKESFHNILSIK 227
Cdd:pfam01652 78 IIR-LKKKGLLDRL---WEDLLLALIGEQFDEDsDEICGAVVSVRKKEDKISIWTRDASdEEAVLKIGKKLKEVLGLP 151
|
|
| CDC33 |
COG5053 |
Translation initiation factor 4E (eIF-4E) [Translation, ribosomal structure and biogenesis]; |
63-245 |
1.75e-14 |
|
Translation initiation factor 4E (eIF-4E) [Translation, ribosomal structure and biogenesis];
Pssm-ID: 227386 Cd Length: 217 Bit Score: 73.39 E-value: 1.75e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 325084226 63 DSKNLEETLP--EKWILWYDTKkaiNTTTTESDGEYLQNVekvGTFNTLKELKNLWDSLKTP--LEVIGNISIFKEGIEP 138
Cdd:COG5053 29 DSAHFMNKHPlaFHWTLWFLKP---PEDGLESWSDLLKSI---ITFETVEEFWYILHNISDAsrLPRKSDYNVFREGIRP 102
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 325084226 139 AWEDSKNKDGGKISVNYLKDNGDfsKVFNAWFTLFTTIVYTTFENYEQS-NGIVLSIRGWGASISLWNGSAE-QDKVQSI 216
Cdd:COG5053 103 EWEDEANMNGGKWSFQLKGKGCD--RLDELWLRTLLAAIGETLDPTGSEiGGVVGNMRKGFYKLAIWTRNCNnKDVLGAI 180
|
170 180 190
....*....|....*....|....*....|..
gi 325084226 217 KESFHNILSIKYS---KYSVHKAAILFKNNKK 245
Cdd:COG5053 181 GNEFKQVLELSDVetlEYKAHESSKLGSYHAK 212
|
|
| PTZ00040 |
PTZ00040 |
translation initiation factor E4; Provisional |
66-218 |
1.54e-12 |
|
translation initiation factor E4; Provisional
Pssm-ID: 240238 Cd Length: 233 Bit Score: 67.91 E-value: 1.54e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 325084226 66 NLEETLP--EKWILWydtkKAINTTTTESDGEYLQNVEKVGTFNTLKELKNLWDSLKTPLE-----------------VI 126
Cdd:PTZ00040 33 PLSTPLPlsYKWVIW----EQVVKETIRKSNDYKDYTKPLASFDSVQKFWQLWFNIPQPSElltgkrmiressdgsehVV 108
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 325084226 127 GNISIFKEGIEPAWEDSKNKDGGKISVNYLKDNGDFSKVFNAWFTLFTTIVYTTFENYEQSNGI----VLSIRGWGASIS 202
Cdd:PTZ00040 109 DAVMIFKDGIQPMWEDPMNATGGHFEYRFWPTDVSPGQIDEYWNNLVLALIGSSLEHSSLINGIrlvdKLSGRFGVIRIE 188
|
170
....*....|....*...
gi 325084226 203 LW--NGSAEQDKVQSIKE 218
Cdd:PTZ00040 189 IWftNLGDQSDRNQLMKE 206
|
|
| rne |
PRK10811 |
ribonuclease E; Reviewed |
523-650 |
8.45e-06 |
|
ribonuclease E; Reviewed
Pssm-ID: 236766 [Multi-domain] Cd Length: 1068 Bit Score: 49.65 E-value: 8.45e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 325084226 523 PEPIAPAPVKKVEPTPTPAPVKKVEPTPAPAKKVEqqpiETQPESFSKVAKKdksyknknQPQPVssswSAQGLSIAELI 602
Cdd:PRK10811 879 VEPVVSAPVVEAVAEVVEEPVVVAEPQPEEVVVVE----TTHPEVIAAPVTE--------QPQVI----TESDVAVAQEV 942
|
90 100 110 120
....*....|....*....|....*....|....*....|....*...
gi 325084226 603 AKQPEPVVSSTPTPSVVEQISATTTVNIVKVETAPSAPSAPSTTPEPV 650
Cdd:PRK10811 943 AEHAEPVVEPQDETADIEEAAETAEVVVAEPEVVAQPAAPVVAEVAAE 990
|
|
| PRK07994 |
PRK07994 |
DNA polymerase III subunits gamma and tau; Validated |
522-676 |
2.32e-05 |
|
DNA polymerase III subunits gamma and tau; Validated
Pssm-ID: 236138 [Multi-domain] Cd Length: 647 Bit Score: 47.94 E-value: 2.32e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 325084226 522 DPEPIAPAPVKK--VEPTPTPAPVKKVEPTPAPAKKVEQQPIETQPESFSKVAKKDKSYKNKnQPQPVSSSWSAQGLSIA 599
Cdd:PRK07994 371 PPQSAAPAASAQatAAPTAAVAPPQAPAVPPPPASAPQQAPAVPLPETTSQLLAARQQLQRA-QGATKAKKSEPAAASRA 449
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 325084226 600 ELIAKQPEPVVSSTPTPSVVEQISATTTVNIVKVETAPSAPSAPSTTPEPVKSGLLQIKEAKKVEVLEVVKSETDEW 676
Cdd:PRK07994 450 RPVNSALERLASVRPAPSALEKAPAKKEAYRWKATNPVEVKKEPVATPKALKKALEHEKTPELAAKLAAEAIERDPW 526
|
|
| PRK10819 |
PRK10819 |
transport protein TonB; Provisional |
523-616 |
1.40e-04 |
|
transport protein TonB; Provisional
Pssm-ID: 236768 [Multi-domain] Cd Length: 246 Bit Score: 44.29 E-value: 1.40e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 325084226 523 PEPIAPAPVkkVEPTPTPAPVKKVEPTPAPAKKVEQQPietQPESFSKVAKKDKSYKNKNQPQPVSSSWSAQglsiaeli 602
Cdd:PRK10819 82 PEPPKEAPV--VIPKPEPKPKPKPKPKPKPVKKVEEQP---KREVKPVEPRPASPFENTAPARPTSSTATAA-------- 148
|
90
....*....|....
gi 325084226 603 AKQPEPVVSSTPTP 616
Cdd:PRK10819 149 ASKPVTSVSSGPRA 162
|
|
| PRK12727 |
PRK12727 |
flagellar biosynthesis protein FlhF; |
504-648 |
3.33e-04 |
|
flagellar biosynthesis protein FlhF;
Pssm-ID: 237182 [Multi-domain] Cd Length: 559 Bit Score: 44.21 E-value: 3.33e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 325084226 504 KEVLQKTEVVSSSDSfweDPEPIAPAPVKKVePTPTPAPVKKVEPTPAPAKKVEQQPIETQPES-FSKVAKKdksyknkn 582
Cdd:PRK12727 48 EELVQRALETARSDT---PATAAAPAPAPQA-PTKPAAPVHAPLKLSANANMSQRQRVASAAEDmIAAMALR-------- 115
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 325084226 583 qpQPVSSSWSAQGlsiaeliakqPEPV-VSSTPTPSVVEQISATTtvnivkVETAPSAPSAPSTTPE 648
Cdd:PRK12727 116 --QPVSVPRQAPA----------AAPVrAASIPSPAAQALAHAAA------VRTAPRQEHALSAVPE 164
|
|
| PRK11633 |
PRK11633 |
cell division protein DedD; Provisional |
521-578 |
4.06e-04 |
|
cell division protein DedD; Provisional
Pssm-ID: 236940 [Multi-domain] Cd Length: 226 Bit Score: 42.68 E-value: 4.06e-04
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|....*...
gi 325084226 521 EDPEPIAPAPVKKVEPTPTPAPVKKVEPTPAPAKKVEQQPiETQPESFSKVAKKDKSY 578
Cdd:PRK11633 94 NTPVEPEPAPVEPPKPKPVEKPKPKPKPQQKVEAPPAPKP-EPKPVVEEKAAPTGKAY 150
|
|
| PRK11633 |
PRK11633 |
cell division protein DedD; Provisional |
507-565 |
5.06e-04 |
|
cell division protein DedD; Provisional
Pssm-ID: 236940 [Multi-domain] Cd Length: 226 Bit Score: 42.30 E-value: 5.06e-04
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|....*....
gi 325084226 507 LQKTEVVSSSDSFWEDPEPIAPAPVKKVEPtPTPAPVKKVEPTPAPAKKVEQQPIETQP 565
Cdd:PRK11633 85 LDPATVAPPNTPVEPEPAPVEPPKPKPVEK-PKPKPKPQQKVEAPPAPKPEPKPVVEEK 142
|
|
| PRK11633 |
PRK11633 |
cell division protein DedD; Provisional |
527-593 |
2.48e-03 |
|
cell division protein DedD; Provisional
Pssm-ID: 236940 [Multi-domain] Cd Length: 226 Bit Score: 40.37 E-value: 2.48e-03
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 325084226 527 APAPVKKVEPTPTPAPVKKVEPTPAPAKKVEQQPIETQPESFSKVAKKDKSYKNKNQPQPVSSSWSA 593
Cdd:PRK11633 78 GDAAAPSLDPATVAPPNTPVEPEPAPVEPPKPKPVEKPKPKPKPQQKVEAPPAPKPEPKPVVEEKAA 144
|
|
| PHA03369 |
PHA03369 |
capsid maturational protease; Provisional |
527-760 |
3.17e-03 |
|
capsid maturational protease; Provisional
Pssm-ID: 223061 [Multi-domain] Cd Length: 663 Bit Score: 41.14 E-value: 3.17e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 325084226 527 APAPVKKVEPTPTPAPVKKVEPTPAPAKKVEQQPIETqPESFSKVAKKDKSYKNKNQPQPVSSSwsaqglSIAELIAKQP 606
Cdd:PHA03369 341 LKAHNEILKTASLTAPSRVLAAAAKVAVIAAPQTHTG-PADRQRPQRPDGIPYSVPARSPMTAY------PPVPQFCGDP 413
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 325084226 607 EPVVSSTPTPSvveqisaTTTVNIVKVETAPSAPSAPSTTPEPVKSGLLQIKEAKKVEvlEVVKSETDEWKsvEKKTKTA 686
Cdd:PHA03369 414 GLVSPYNPQSP-------GTSYGPEPVGPVPPQPTNPYVMPISMANMVYPGHPQEHGH--ERKRKRGGELK--EELIETL 482
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 325084226 687 KKISNDKEKKENITNNKGPQDNL-LIRNLIVEEPLEYLSPVKQPQKKQSKESSKEQPKSKEQPKEQSKPKEQPKE 760
Cdd:PHA03369 483 KLVKKLKEEQESLAKELEATAHKsEIKKIAESEFKNAGAKTAAANIEPNCSADAAAPATKRARPETKTELEAVVR 557
|
|
| PRK10819 |
PRK10819 |
transport protein TonB; Provisional |
521-650 |
3.53e-03 |
|
transport protein TonB; Provisional
Pssm-ID: 236768 [Multi-domain] Cd Length: 246 Bit Score: 40.05 E-value: 3.53e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 325084226 521 EDPEPIAPAPVKKVEPTPTPAPVkkvePTPAPAKKVEQQPIETQPESfskvakkdksyKNKNQPQPVSSswsaqglsiAE 600
Cdd:PRK10819 59 EPPQAVQPPPEPVVEPEPEPEPI----PEPPKEAPVVIPKPEPKPKP-----------KPKPKPKPVKK---------VE 114
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|
gi 325084226 601 LIAKQPEPVVSSTPtPSVVEQISATTTVNIVKVETAPSAPSAPSTTPEPV 650
Cdd:PRK10819 115 EQPKREVKPVEPRP-ASPFENTAPARPTSSTATAAASKPVTSVSSGPRAL 163
|
|
| PTZ00449 |
PTZ00449 |
104 kDa microneme/rhoptry antigen; Provisional |
673-795 |
5.31e-03 |
|
104 kDa microneme/rhoptry antigen; Provisional
Pssm-ID: 185628 [Multi-domain] Cd Length: 943 Bit Score: 40.44 E-value: 5.31e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 325084226 673 TDEWKSVEKKTKtaKKISNDKEkkENITNNKGPQdnllirnlivEEPLEYLSPVKQPQKKQSKESSKEQPKSKEQPKEQS 752
Cdd:PTZ00449 482 TQEIKKLIKKSK--KKLAPIEE--EDSDKHDEPP----------EGPEASGLPPKAPGDKEGEEGEHEDSKESDEPKEGG 547
|
90 100 110 120
....*....|....*....|....*....|....*....|...
gi 325084226 753 KPKEQPKETNTVKKTSKKQTEVTKTTTSNNKPNNKSVTQNTKD 795
Cdd:PTZ00449 548 KPGETKEGEVGKKPGPAKEHKPSKIPTLSKKPEFPKDPKHPKD 590
|
|
| Stm1_N |
pfam09598 |
Stm1; This region is found at the N terminal of the Stm1 protein. Stm1 is a G4 quadraplex and ... |
521-556 |
7.46e-03 |
|
Stm1; This region is found at the N terminal of the Stm1 protein. Stm1 is a G4 quadraplex and purine motif triplex nucleic acid-binding protein. It has been implicated in many biological processes including apoptosis and telomere biosynthesis. Stm1 is known to interact with CDC13, and is known to associate with ribosomes and nuclear telomere cap complexes.
Pssm-ID: 430706 Cd Length: 64 Bit Score: 35.78 E-value: 7.46e-03
10 20 30
....*....|....*....|....*....|....*.
gi 325084226 521 EDPEPIAPAPVKKVEPTPTPAPVKKVEPTPAPAKKV 556
Cdd:pfam09598 16 EDPSQREPAPPTKAVDKPTARTAKRPAKPEPPAQAV 51
|
|
|