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Conserved domains on  [gi|323515228|gb|ADX90143|]
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NADH-plastoquinone oxidoreductase subunit J, partial (chloroplast) [Valerianella pumila]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
PRK06074 super family cl19197
NADH dehydrogenase subunit C; Provisional
 1-131 7.36e-108

NADH dehydrogenase subunit C; Provisional


The actual alignment was detected with superfamily member CHL00012:

Pssm-ID: 473149 [Multi-domain]  Cd Length: 158  Bit Score: 302.77  E-value: 7.36e-108
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 323515228   1 HRSFGFDYQGTETLQIKPEDWHSIAVILYVYGYNYLRSQCAYDVAPGGLLASVYHLTRIEYGMDQPEEVCIKVFASRRHP 80
Cdd:CHL00012  16 HRSLGFDYQGIETLQIKPEDWHSIAVILYVYGYNYLRSQCAYDVAPGGLLASVYHLTRIQYGVDQPEEVCIKVFVPRKNP 95

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|.
gi 323515228  81 RIPSVFWVWKSVDFQERESYDMLGIFYDNHPRLKRILMPESWIGWPLRKDY 131
Cdd:CHL00012  96 RIPSVFWVWKSADFQERESYDMLGISYDNHPRLKRILMPESWIGWPLRKDY 146
 
Name Accession Description Interval E-value
ndhJ CHL00012
NADH dehydrogenase subunit J
 1-131 7.36e-108

NADH dehydrogenase subunit J


Pssm-ID: 176955 [Multi-domain]  Cd Length: 158  Bit Score: 302.77  E-value: 7.36e-108
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 323515228   1 HRSFGFDYQGTETLQIKPEDWHSIAVILYVYGYNYLRSQCAYDVAPGGLLASVYHLTRIEYGMDQPEEVCIKVFASRRHP 80
Cdd:CHL00012  16 HRSLGFDYQGIETLQIKPEDWHSIAVILYVYGYNYLRSQCAYDVAPGGLLASVYHLTRIQYGVDQPEEVCIKVFVPRKNP 95

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|.
gi 323515228  81 RIPSVFWVWKSVDFQERESYDMLGIFYDNHPRLKRILMPESWIGWPLRKDY 131
Cdd:CHL00012  96 RIPSVFWVWKSADFQERESYDMLGISYDNHPRLKRILMPESWIGWPLRKDY 146
Complex1_30kDa pfam00329
Respiratory-chain NADH dehydrogenase, 30 Kd subunit;
14-131 1.08e-45

Respiratory-chain NADH dehydrogenase, 30 Kd subunit;


Pssm-ID: 459763 [Multi-domain]  Cd Length: 121  Bit Score: 144.16  E-value: 1.08e-45
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 323515228   14 LQIKPEDWHSIAVILY--VYGYNYLRSQCAYDVAPGGLLASVYHLTRieygMDQPEEVCIKVFAsRRHPRIPSVFWVWKS 91
Cdd:pfam00329   1 VTVDPEDLLEVARFLRddELGFDHLSDLTGVDYPEEGRFEVVYHLLS----ITHNVRVRVKVPL-EDDPVVPSVTDIWPG 75

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|
gi 323515228   92 VDFQERESYDMLGIFYDNHPRLKRILMPESWIGWPLRKDY 131
Cdd:pfam00329  76 ANWYEREVYDMFGIVFEGHPDLRRILLPEDWEGHPLRKDF 115
NuoC COG0852
NADH:ubiquinone oxidoreductase 27 kD subunit (chain C) [Energy production and conversion]; ...
 10-131 1.30e-42

NADH:ubiquinone oxidoreductase 27 kD subunit (chain C) [Energy production and conversion]; NADH:ubiquinone oxidoreductase 27 kD subunit (chain C) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440613 [Multi-domain]  Cd Length: 164  Bit Score: 137.66  E-value: 1.30e-42
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 323515228  10 GTETLQIKPEDWHSIAVILY-VYGYNYLRSQCAYD-VAPGGLLASVYHLTRIEYGmdqpEEVCIKVFASRRHPRIPSVFW 87
Cdd:COG0852   27 GELTLTVPPEDLVDVARFLRdDLGFDHLSDLTGVDyPERGDRFEVVYHLLSLTHN----RRLRLKVFVPRDDPVVPSVTD 102

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|....
gi 323515228  88 VWKSVDFQERESYDMLGIFYDNHPRLKRILMPESWIGWPLRKDY 131
Cdd:COG0852  103 VWPGANWHEREAYDMFGIVFEGHPDLRRILLPEDWEGHPLRKDF 146
NuoC_fam TIGR01961
NADH (or F420H2) dehydrogenase, subunit C; This model describes the C subunit of the NADH ...
 32-131 2.22e-27

NADH (or F420H2) dehydrogenase, subunit C; This model describes the C subunit of the NADH dehydrogenase complex I in bacteria, as well as many instances of the corresponding mitochondrial subunit (NADH dehydrogenase subunit 9) and of the F420H2 dehydrogenase in Methanosarcina. Complex I contains subunits designated A-N. This C subunit often occurs as a fusion protein with the D subunit. This model excludes the NAD(P)H and plastoquinone-dependent form of chloroplasts and [Energy metabolism, Electron transport]


Pssm-ID: 273897 [Multi-domain]  Cd Length: 121  Bit Score: 97.69  E-value: 2.22e-27
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 323515228   32 GYNYLRSQCAYDVAPGGLLASVYHLtrieYGMDQPEEVCIKVFASRRHPrIPSVFWVWKSVDFQERESYDMLGIFYDNHP 111
Cdd:TIGR01961  23 GFELLTDVSGVDYPKEKRFEVVYHL----LSIKKNRRIRLKVRLSEDDP-VPSLTSVFPTANWYERETYDMYGIVFDGHP 97

                          90       100
                  ....*....|....*....|
gi 323515228  112 RLKRILMPESWIGWPLRKDY 131
Cdd:TIGR01961  98 DLRRILMPDDFEGHPLRKDY 117
 
Name Accession Description Interval E-value
ndhJ CHL00012
NADH dehydrogenase subunit J
 1-131 7.36e-108

NADH dehydrogenase subunit J


Pssm-ID: 176955 [Multi-domain]  Cd Length: 158  Bit Score: 302.77  E-value: 7.36e-108
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 323515228   1 HRSFGFDYQGTETLQIKPEDWHSIAVILYVYGYNYLRSQCAYDVAPGGLLASVYHLTRIEYGMDQPEEVCIKVFASRRHP 80
Cdd:CHL00012  16 HRSLGFDYQGIETLQIKPEDWHSIAVILYVYGYNYLRSQCAYDVAPGGLLASVYHLTRIQYGVDQPEEVCIKVFVPRKNP 95

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|.
gi 323515228  81 RIPSVFWVWKSVDFQERESYDMLGIFYDNHPRLKRILMPESWIGWPLRKDY 131
Cdd:CHL00012  96 RIPSVFWVWKSADFQERESYDMLGISYDNHPRLKRILMPESWIGWPLRKDY 146
PRK12494 PRK12494
NAD(P)H-quinone oxidoreductase subunit J;
1-131 6.15e-63

NAD(P)H-quinone oxidoreductase subunit J;


Pssm-ID: 183557 [Multi-domain]  Cd Length: 172  Bit Score: 189.78  E-value: 6.15e-63
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 323515228   1 HRSFGFDYQGTETLQIKPEDWHSIAVILYVYGYNYLRSQCAYDVAPGGLLASVYHLTRIEYGMDQPEEVCIKVFASRRHP 80
Cdd:PRK12494  30 HESLGPDHLGVEIIKVEPDFLLPIATALYAYGFNYLQCQGGYDEGPGKELVSFYHLIKVSDNADKPREVRLKVFLPRDDP 109

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|.
gi 323515228  81 RIPSVFWVWKSVDFQERESYDMLGIFYDNHPRLKRILMPESWIGWPLRKDY 131
Cdd:PRK12494 110 RVPSVYWIWKGADWQERETYDMYGINFEGHPNLKRILMPEDWVGWPLRKDY 160
Complex1_30kDa pfam00329
Respiratory-chain NADH dehydrogenase, 30 Kd subunit;
14-131 1.08e-45

Respiratory-chain NADH dehydrogenase, 30 Kd subunit;


Pssm-ID: 459763 [Multi-domain]  Cd Length: 121  Bit Score: 144.16  E-value: 1.08e-45
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 323515228   14 LQIKPEDWHSIAVILY--VYGYNYLRSQCAYDVAPGGLLASVYHLTRieygMDQPEEVCIKVFAsRRHPRIPSVFWVWKS 91
Cdd:pfam00329   1 VTVDPEDLLEVARFLRddELGFDHLSDLTGVDYPEEGRFEVVYHLLS----ITHNVRVRVKVPL-EDDPVVPSVTDIWPG 75

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|
gi 323515228   92 VDFQERESYDMLGIFYDNHPRLKRILMPESWIGWPLRKDY 131
Cdd:pfam00329  76 ANWYEREVYDMFGIVFEGHPDLRRILLPEDWEGHPLRKDF 115
NuoC COG0852
NADH:ubiquinone oxidoreductase 27 kD subunit (chain C) [Energy production and conversion]; ...
 10-131 1.30e-42

NADH:ubiquinone oxidoreductase 27 kD subunit (chain C) [Energy production and conversion]; NADH:ubiquinone oxidoreductase 27 kD subunit (chain C) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440613 [Multi-domain]  Cd Length: 164  Bit Score: 137.66  E-value: 1.30e-42
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 323515228  10 GTETLQIKPEDWHSIAVILY-VYGYNYLRSQCAYD-VAPGGLLASVYHLTRIEYGmdqpEEVCIKVFASRRHPRIPSVFW 87
Cdd:COG0852   27 GELTLTVPPEDLVDVARFLRdDLGFDHLSDLTGVDyPERGDRFEVVYHLLSLTHN----RRLRLKVFVPRDDPVVPSVTD 102

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|....
gi 323515228  88 VWKSVDFQERESYDMLGIFYDNHPRLKRILMPESWIGWPLRKDY 131
Cdd:COG0852  103 VWPGANWHEREAYDMFGIVFEGHPDLRRILLPEDWEGHPLRKDF 146
PRK06074 PRK06074
NADH dehydrogenase subunit C; Provisional
 13-131 7.29e-28

NADH dehydrogenase subunit C; Provisional


Pssm-ID: 235691 [Multi-domain]  Cd Length: 189  Bit Score: 101.14  E-value: 7.29e-28
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 323515228  13 TLQIKPEDWHSIAVIL---YVYGYNYLRSQCAYD-VAPGGLLASVYHLtrieYGMDQPEEVCIKVFASRRhPRIPSVFWV 88
Cdd:PRK06074  30 TLKVPAEKILEVLTFLrddPELRFEQLIDLTGVDyPERGKRFEVVYHL----LSYKHNVRLRVKVRAPED-PVVPSVVDI 104

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|...
gi 323515228  89 WKSVDFQERESYDMLGIFYDNHPRLKRILMPESWIGWPLRKDY 131
Cdd:PRK06074 105 WPSANWYEREAYDLYGIVFEGHPDLRRILTDYGFEGHPLRKDF 147
NuoC_fam TIGR01961
NADH (or F420H2) dehydrogenase, subunit C; This model describes the C subunit of the NADH ...
 32-131 2.22e-27

NADH (or F420H2) dehydrogenase, subunit C; This model describes the C subunit of the NADH dehydrogenase complex I in bacteria, as well as many instances of the corresponding mitochondrial subunit (NADH dehydrogenase subunit 9) and of the F420H2 dehydrogenase in Methanosarcina. Complex I contains subunits designated A-N. This C subunit often occurs as a fusion protein with the D subunit. This model excludes the NAD(P)H and plastoquinone-dependent form of chloroplasts and [Energy metabolism, Electron transport]


Pssm-ID: 273897 [Multi-domain]  Cd Length: 121  Bit Score: 97.69  E-value: 2.22e-27
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 323515228   32 GYNYLRSQCAYDVAPGGLLASVYHLtrieYGMDQPEEVCIKVFASRRHPrIPSVFWVWKSVDFQERESYDMLGIFYDNHP 111
Cdd:TIGR01961  23 GFELLTDVSGVDYPKEKRFEVVYHL----LSIKKNRRIRLKVRLSEDDP-VPSLTSVFPTANWYERETYDMYGIVFDGHP 97

                          90       100
                  ....*....|....*....|
gi 323515228  112 RLKRILMPESWIGWPLRKDY 131
Cdd:TIGR01961  98 DLRRILMPDDFEGHPLRKDY 117
PRK07735 PRK07735
NADH-quinone oxidoreductase subunit C;
13-131 3.79e-25

NADH-quinone oxidoreductase subunit C;


Pssm-ID: 236081 [Multi-domain]  Cd Length: 430  Bit Score: 98.13  E-value: 3.79e-25
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 323515228  13 TLQIKPEDWHSIAVILYVY---GYNYLRSQCAYDVAPGglLASVYHLtrIEYGMDQPeeVCIKVFASRRHPRIPSVFWVW 89
Cdd:PRK07735 308 TLVVEPEKYYEVAELLRFHeqlAFDYLSELHGTDFVTH--MEVYVHL--YSYGKRQS--VAVKVKLDREAPQVESVTPLW 381

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|..
gi 323515228  90 KSVDFQERESYDMLGIFYDNHPRLKRILMPESWIGWPLRKDY 131
Cdd:PRK07735 382 KGANWPEREAYDLLGIVFKGHPNLSRILLPDDWVGHPLRKDY 423
PRK07785 PRK07785
NADH dehydrogenase subunit C; Provisional
 50-131 1.93e-24

NADH dehydrogenase subunit C; Provisional


Pssm-ID: 181115 [Multi-domain]  Cd Length: 235  Bit Score: 93.52  E-value: 1.93e-24
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 323515228  50 LASVYHLTRIEYGmdqpEEVCIKVFASRRHPRIPSVFWVWKSVDFQERESYDMLGIFYDNHPRLKRILMPESWIGWPLRK 129
Cdd:PRK07785 134 LHAVYHLTSITHN----RRIRLEVAVPDADPHIPSLVSVYPTNDWHERETYDFFGIVFDGHPALTRIEMPDDWVGHPQRK 209


                 ..
gi 323515228 130 DY 131
Cdd:PRK07785 210 DY 211
PRK08491 PRK08491
NADH-quinone oxidoreductase subunit C;
10-131 2.97e-21

NADH-quinone oxidoreductase subunit C;


Pssm-ID: 181449  Cd Length: 263  Bit Score: 85.49  E-value: 2.97e-21
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 323515228  10 GTETLQIKPEDWHSIAVILYVYGYNYLRSQCAYD-VAPGGLLASVYHLTrieyGMDQPEEVCIKVFASRRHpRIPSVFWV 88
Cdd:PRK08491  57 DQAVIWIKKDDNFKVLKILKHLGYECLSEMSAIDfLAKKGGFEVFYQLL----SMSKRKRVRVKCFLKEKE-ALQSVSFL 131

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|...
gi 323515228  89 WKSVDFQERESYDMLGIFYDNHPRLKRILMPESWIGWPLRKDY 131
Cdd:PRK08491 132 FKSANWSEREMYDMFGIVINNHPYLKRILMPDDWVGHPLLKSY 174
PRK11742 PRK11742
bifunctional NADH:ubiquinone oxidoreductase subunit C/D; Provisional
 53-131 4.40e-21

bifunctional NADH:ubiquinone oxidoreductase subunit C/D; Provisional


Pssm-ID: 236965 [Multi-domain]  Cd Length: 575  Bit Score: 87.28  E-value: 4.40e-21
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 323515228  53 VYHLTRIEYGMDqpeeVCIKVFASRRHPRIPSVFWVWKSVDFQERESYDMLGIFYDNHPRLKRILMPESWIGWPLRKDY 131
Cdd:PRK11742  75 FYHLISIERNRD----IMLKVALSENDLHVPTITKIFPNANWYERETWDMFGITFDGHPHLRRILMPPTWEGHPLRKDY 149
PRK13292 PRK13292
NADH-quinone oxidoreductase subunit B/C/D;
53-131 1.34e-19

NADH-quinone oxidoreductase subunit B/C/D;


Pssm-ID: 183955 [Multi-domain]  Cd Length: 788  Bit Score: 83.29  E-value: 1.34e-19
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 323515228  53 VYHLTrieyGMDQPEEVCIKVFASRRHPRIPSVFWVWKSVDFQERESYDMLGIFYDNHPRLKRILMPESWIGWPLRKDY 131
Cdd:PRK13292 296 NYHLL----SFDTPGHVRIKTELRGRTPELPSATGVFPAANWYEREAFDMFGIRFAGHPNLRRILMPPDWEGHPLRKEH 370
HycE1 COG3262
Ni,Fe-hydrogenase III component G [Energy production and conversion];
13-130 1.96e-11

Ni,Fe-hydrogenase III component G [Energy production and conversion];


Pssm-ID: 442493 [Multi-domain]  Cd Length: 523  Bit Score: 59.96  E-value: 1.96e-11
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 323515228  13 TLQIKPEDWHSIAVILYVYGYNYLRSQCAYD-VAPGGLLASVYHLTrieygMDQPEE-VCIKVFASRRHPRIPSVFWVWK 90
Cdd:COG3262   27 WVEVDREDLPELAEFLAEGGGGRLAALWGNDeRELGGGFAVYYVFA-----LEGEGAlVTLKVSVPKDDPVFPSITDLFP 101

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|..
gi 323515228  91 SVDFQERESYDMLGIFYDNHPRLKRILMPESW-IGW-PLRKD 130
Cdd:COG3262  102 AASWYEREIRDLFGIVPEGHPDPRRLVLHDDWpEGIyPLRKD 143
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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